Wall clock time and date at job start Wed Apr 1 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21279 * 120.00410 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99541 * 359.97438 * 3 2 1 6 6 H 1.08994 * 110.85784 * 303.78700 * 5 3 2 7 7 C 1.54631 * 110.96960 * 67.62620 * 5 3 2 8 8 C 1.51277 * 104.19957 * 93.31829 * 7 5 3 9 9 O 1.21303 * 124.94530 * 196.21575 * 8 7 5 10 10 N 1.34422 * 110.11678 * 16.25221 * 8 7 5 11 11 C 1.40757 * 124.35079 * 180.43498 * 10 8 7 12 12 C 1.40264 * 126.07859 * 179.67119 * 11 10 8 13 13 N 1.30830 * 108.32913 * 179.81117 * 12 11 10 14 14 N 1.40065 * 108.37599 * 0.43826 * 13 12 11 15 15 H 0.96996 * 126.05861 * 179.74366 * 14 13 12 16 16 C 1.35756 * 126.08390 * 359.96738 * 11 10 8 17 17 C 1.46768 * 111.29893 * 0.40490 * 10 8 7 18 18 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 19 19 H 1.09001 * 110.64094 * 179.30239 * 18 2 1 20 20 C 1.55157 * 110.71944 * 302.44034 * 18 2 1 21 21 C 1.55120 * 101.48508 * 153.73433 * 20 18 2 22 22 N 1.47429 * 104.94517 * 323.22393 * 21 20 18 23 23 C 1.36934 * 125.65171 * 203.97027 * 22 21 20 24 24 H 1.08001 * 119.99784 * 180.02562 * 23 22 21 25 25 C 1.38814 * 119.99719 * 0.03579 * 23 22 21 26 26 N 1.31618 * 120.00216 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99604 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46839 * 60.00858 * 27 25 23 29 29 H 1.48500 * 109.46687 * 179.97438 * 27 25 23 30 30 H 1.48491 * 109.47301 * 300.00127 * 27 25 23 31 31 C 1.47021 * 108.69974 * 24.00062 * 22 21 20 32 32 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 33 33 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 34 34 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 35 35 H 1.09001 * 110.48344 * 211.99903 * 7 5 3 36 36 H 1.08996 * 110.48317 * 334.63816 * 7 5 3 37 37 H 1.07991 * 125.83330 * 359.97438 * 12 11 10 38 38 H 1.07997 * 126.21539 * 0.04177 * 16 11 10 39 39 H 1.09002 * 110.24622 * 223.98618 * 17 10 8 40 40 H 1.09000 * 110.31660 * 102.02124 * 17 10 8 41 41 H 1.09003 * 111.00988 * 271.94168 * 20 18 2 42 42 H 1.09000 * 111.00434 * 35.79481 * 20 18 2 43 43 H 1.09000 * 110.41937 * 204.29919 * 21 20 18 44 44 H 1.08996 * 110.30114 * 82.09125 * 21 20 18 45 45 H 0.97002 * 119.99836 * 180.02562 * 26 25 23 46 46 H 1.08994 * 109.88727 * 239.52675 * 31 22 21 47 47 H 1.09001 * 110.01049 * 118.42923 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.7011 2.5249 -0.8474 7 6 0.6322 2.6770 1.3343 8 6 1.5940 3.4776 2.1841 9 8 1.5121 3.6123 3.3868 10 7 2.5524 4.0189 1.4124 11 6 3.6071 4.8151 1.8972 12 6 4.6281 5.3916 1.1274 13 7 5.4180 6.0613 1.9269 14 7 4.9368 5.9289 3.2356 15 1 5.3310 6.3197 4.0311 16 6 3.8202 5.1570 3.1936 17 6 2.3582 3.6723 -0.0005 18 6 2.1975 -1.2687 0.0006 19 1 3.2729 -1.0915 -0.0119 20 6 1.7978 -2.1328 1.2257 21 6 2.0882 -3.5639 0.7023 22 7 1.7052 -3.5331 -0.7211 23 6 1.3453 -4.6185 -1.4744 24 1 1.0811 -4.4907 -2.5138 25 6 1.3199 -5.8829 -0.9021 26 7 1.6412 -6.0384 0.3648 27 14 0.8282 -7.3634 -1.9296 28 1 1.7655 -7.5059 -3.0726 29 1 0.8817 -8.5877 -1.0909 30 1 -0.5525 -7.1738 -2.4422 31 6 1.7744 -2.1441 -1.1979 32 1 -0.3634 0.0000 1.0277 33 1 -0.3633 -0.8900 -0.5138 34 1 -0.3633 0.8900 -0.5139 35 1 -0.2889 3.2364 1.1706 36 1 0.4180 1.7163 1.8026 37 1 4.7412 5.3005 0.0573 38 1 3.2126 4.8672 4.0381 39 1 3.3081 3.3878 -0.4531 40 1 1.9207 4.5126 -0.5396 41 1 2.4186 -1.8964 2.0899 42 1 0.7405 -2.0113 1.4612 43 1 1.4861 -4.2954 1.2413 44 1 3.1481 -3.7963 0.8049 45 1 1.6237 -6.9221 0.7646 46 1 0.7967 -1.8276 -1.5611 47 1 2.5113 -2.0602 -1.9966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033077374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:19 Heat of formation + Delta-G solvation = 32.635832 kcal Electronic energy + Delta-G solvation = -30967.128090 eV Core-core repulsion = 26766.156162 eV Total energy + Delta-G solvation = -4200.971928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.61539 -41.67656 -40.46310 -38.96421 -37.33629 -36.30114 -34.46248 -33.64079 -32.33158 -31.14121 -29.84576 -28.95132 -28.77386 -27.75342 -26.51058 -24.56573 -23.72672 -22.36683 -22.13275 -21.41669 -20.43460 -19.95473 -19.14892 -18.95779 -18.59719 -17.60927 -17.32802 -16.77801 -16.54502 -16.29083 -16.06538 -15.86558 -15.59314 -15.46736 -15.26802 -14.79311 -14.59504 -14.40094 -14.17680 -13.98066 -13.76869 -13.70598 -13.46657 -13.36502 -13.00020 -12.96826 -12.71045 -12.64758 -12.51299 -12.33670 -12.15936 -12.06972 -12.06540 -11.79733 -11.41933 -11.35734 -10.95092 -10.76575 -10.72748 -10.72088 -9.60955 -8.90950 -8.74720 -7.77033 -5.22880 0.72193 1.20420 1.48544 1.51856 1.56238 1.58183 1.60096 1.92121 2.04874 2.22155 2.51436 3.20967 3.28303 3.33531 3.44620 3.71433 3.79278 3.88949 3.90811 3.95912 3.99710 4.23212 4.26923 4.43713 4.46665 4.52883 4.60096 4.62993 4.64720 4.73625 4.74745 4.79574 4.86313 4.90857 4.98334 5.09081 5.11595 5.13121 5.46124 5.56574 5.58905 5.76453 5.77365 6.02380 6.26936 6.28616 6.46267 6.57323 7.05107 7.09086 7.15446 7.76160 8.39716 9.24617 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.002216 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.574728 B =12629.725581 C =12755.719912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.596 5.596 3 C 0.510 3.490 4 O -0.581 6.581 5 C -0.108 4.108 6 H 0.182 0.818 7 C -0.132 4.132 8 C 0.499 3.501 9 O -0.567 6.567 10 N -0.531 5.531 11 C -0.009 4.009 12 C 0.045 3.955 13 N -0.301 5.301 14 N -0.465 5.465 15 H 0.457 0.543 16 C 0.034 3.966 17 C 0.111 3.889 18 C 0.142 3.858 19 H 0.079 0.921 20 C -0.133 4.133 21 C 0.157 3.843 22 N -0.622 5.622 23 C -0.238 4.238 24 H 0.084 0.916 25 C -0.067 4.067 26 N -0.951 5.951 27 Si 0.982 3.018 28 H -0.281 1.281 29 H -0.296 1.296 30 H -0.271 1.271 31 C 0.131 3.869 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.166 0.834 36 H 0.109 0.891 37 H 0.210 0.790 38 H 0.188 0.812 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.080 0.920 44 H -0.020 1.020 45 H 0.247 0.753 46 H 0.052 0.948 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 26.124 0.106 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.327 5.327 3 C 0.300 3.700 4 O -0.461 6.461 5 C -0.129 4.129 6 H 0.200 0.800 7 C -0.171 4.171 8 C 0.289 3.711 9 O -0.446 6.446 10 N -0.256 5.256 11 C -0.112 4.112 12 C -0.143 4.143 13 N -0.124 5.124 14 N -0.178 5.178 15 H 0.304 0.696 16 C -0.115 4.115 17 C -0.010 4.010 18 C 0.037 3.963 19 H 0.097 0.903 20 C -0.172 4.172 21 C 0.031 3.969 22 N -0.348 5.348 23 C -0.367 4.367 24 H 0.102 0.898 25 C -0.259 4.259 26 N -0.600 5.600 27 Si 0.810 3.190 28 H -0.207 1.207 29 H -0.222 1.222 30 H -0.197 1.197 31 C 0.005 3.995 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.183 0.817 36 H 0.127 0.873 37 H 0.227 0.773 38 H 0.205 0.795 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.098 0.902 44 H -0.002 1.002 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.358 26.718 0.796 26.940 hybrid contribution -0.024 -1.843 0.229 1.857 sum -3.382 24.876 1.025 25.125 Atomic orbital electron populations 1.22253 0.76956 1.05318 1.03500 1.47821 1.08521 1.04369 1.71971 1.21113 0.87649 0.86190 0.75075 1.90708 1.16101 1.87676 1.51616 1.22445 0.98369 0.89734 1.02347 0.80040 1.22474 0.99248 1.02626 0.92800 1.21655 0.82598 0.79555 0.87308 1.90645 1.75697 1.63110 1.15150 1.45300 1.23320 1.47021 1.09991 1.17871 0.95354 1.05156 0.92786 1.24063 0.91900 0.96875 1.01488 1.77216 1.22744 1.23900 0.88528 1.46164 1.21488 1.41898 1.08298 0.69588 1.22598 0.92333 0.97912 0.98681 1.22401 1.01496 0.97330 0.79806 1.21718 0.96388 0.83006 0.95184 0.90296 1.23165 1.01842 0.95560 0.96637 1.21718 0.95849 0.94175 0.85125 1.44685 1.79429 1.02403 1.08298 1.19415 1.37608 0.85824 0.93834 0.89778 1.25659 1.02387 1.00269 0.97610 1.70030 1.55813 1.21727 1.12438 0.85099 0.78454 0.78194 0.77250 1.20733 1.22202 1.19710 1.21620 0.98692 0.84562 0.94640 0.90997 0.91362 0.86252 0.81659 0.87328 0.77298 0.79543 0.89387 0.85035 0.91438 0.90008 0.90223 1.00201 0.94288 0.93041 0.96768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 7.93 127.77 1.01 1.96 16 2 N -0.60 -14.51 2.88 -815.94 -2.35 -16.86 16 3 C 0.51 11.88 7.00 87.66 0.61 12.49 16 4 O -0.58 -19.29 14.90 -3.02 -0.05 -19.33 16 5 C -0.11 -1.18 2.55 -10.48 -0.03 -1.20 16 6 H 0.18 0.17 7.25 -2.39 -0.02 0.16 16 7 C -0.13 -1.48 5.78 30.59 0.18 -1.30 16 8 C 0.50 10.59 7.98 87.90 0.70 11.29 16 9 O -0.57 -16.20 15.64 -3.10 -0.05 -16.25 16 10 N -0.53 -10.28 3.16 -628.34 -1.99 -12.26 16 11 C -0.01 -0.19 6.80 37.62 0.26 0.06 16 12 C 0.04 0.88 11.53 85.33 0.98 1.86 16 13 N -0.30 -6.47 12.69 -56.77 -0.72 -7.19 16 14 N -0.46 -8.42 7.40 -56.81 -0.42 -8.84 16 15 H 0.46 5.13 8.96 -213.35 -1.91 3.22 16 16 C 0.03 0.72 11.18 83.50 0.93 1.66 16 17 C 0.11 1.36 6.26 86.83 0.54 1.90 16 18 C 0.14 4.94 3.35 46.18 0.15 5.10 16 19 H 0.08 3.15 6.99 -2.39 -0.02 3.13 16 20 C -0.13 -4.95 6.66 32.06 0.21 -4.74 16 21 C 0.16 7.77 5.89 86.93 0.51 8.28 16 22 N -0.62 -31.44 3.40 -691.57 -2.35 -33.78 16 23 C -0.24 -13.03 10.27 84.03 0.86 -12.17 16 24 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 25 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 26 N -0.95 -56.21 10.09 21.65 0.22 -55.99 16 27 Si 0.98 44.76 29.55 68.60 2.03 46.79 16 28 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 30 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 31 C 0.13 5.22 6.80 86.73 0.59 5.81 16 32 H 0.07 0.98 7.20 -2.39 -0.02 0.96 16 33 H 0.07 1.37 6.26 -2.39 -0.01 1.35 16 34 H 0.12 0.68 6.28 -2.38 -0.01 0.67 16 35 H 0.17 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.11 1.43 6.21 -2.39 -0.01 1.42 16 37 H 0.21 2.79 8.06 -2.92 -0.02 2.77 16 38 H 0.19 4.07 6.51 -2.91 -0.02 4.05 16 39 H 0.09 1.42 7.01 -2.39 -0.02 1.41 16 40 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.08 2.77 7.19 -2.39 -0.02 2.75 16 43 H 0.08 4.44 5.87 -2.39 -0.01 4.43 16 44 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 45 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 46 H 0.05 1.84 6.12 -2.39 -0.01 1.83 16 47 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -84.40 373.23 1.44 -82.97 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.88 Total: 13.02 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 7.99 Total: 27.75 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -7.60 Total: -134.93 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.09 Total: -35.58 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -84.40 1.44 -82.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033077374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.601 kcal (2) G-P(sol) polarization free energy of solvation -84.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds