Wall clock time and date at job start Wed Apr 1 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99855 * 2 1 4 4 O 1.21284 * 120.00329 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00375 * 359.97438 * 3 2 1 6 6 H 1.09004 * 109.50555 * 322.16320 * 5 3 2 7 7 C 1.53103 * 109.50180 * 82.28511 * 5 3 2 8 8 O 1.43019 * 109.25286 * 176.78422 * 7 5 3 9 9 C 1.43011 * 113.74144 * 301.33173 * 8 7 5 10 10 C 1.53102 * 109.25713 * 58.67340 * 9 8 7 11 11 N 1.47004 * 109.25648 * 303.15076 * 10 9 8 12 12 C 1.46901 * 111.00251 * 182.39320 * 11 10 9 13 13 C 1.53004 * 109.46811 * 73.29796 * 12 11 10 14 14 F 1.39901 * 109.47304 * 293.80831 * 13 12 11 15 15 F 1.39902 * 109.47162 * 53.81104 * 13 12 11 16 16 C 1.46500 * 120.00471 * 179.97438 * 2 1 3 17 17 H 1.08991 * 110.89138 * 179.30016 * 16 2 1 18 18 C 1.55160 * 111.00342 * 303.18709 * 16 2 1 19 19 C 1.54331 * 102.94070 * 153.61227 * 18 16 2 20 20 N 1.47018 * 107.27058 * 337.80102 * 19 18 16 21 21 C 1.36942 * 125.64968 * 178.98790 * 20 19 18 22 22 H 1.07994 * 120.00234 * 179.97438 * 21 20 19 23 23 C 1.38819 * 119.99463 * 359.97438 * 21 20 19 24 24 N 1.31614 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99633 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47249 * 89.99763 * 25 23 21 27 27 H 1.48501 * 109.47198 * 209.99796 * 25 23 21 28 28 H 1.48507 * 109.47563 * 329.99944 * 25 23 21 29 29 C 1.47430 * 108.70450 * 358.94628 * 20 19 18 30 30 H 1.08996 * 109.47332 * 270.00056 * 1 2 3 31 31 H 1.08997 * 109.46866 * 30.00278 * 1 2 3 32 32 H 1.09000 * 109.46852 * 150.00267 * 1 2 3 33 33 H 1.08997 * 109.51319 * 296.72138 * 7 5 3 34 34 H 1.09004 * 109.50499 * 56.85675 * 7 5 3 35 35 H 1.08991 * 109.50848 * 298.73598 * 9 8 7 36 36 H 1.09007 * 109.53969 * 178.62611 * 9 8 7 37 37 H 1.08999 * 109.50285 * 183.21022 * 10 9 8 38 38 H 1.09002 * 109.50812 * 63.08460 * 10 9 8 39 39 H 1.08997 * 109.47769 * 193.29915 * 12 11 10 40 40 H 1.09001 * 109.46634 * 313.30420 * 12 11 10 41 41 H 1.08998 * 109.46867 * 173.80861 * 13 12 11 42 42 H 1.08997 * 110.71693 * 271.96890 * 18 16 2 43 43 H 1.08997 * 110.72192 * 35.24305 * 18 16 2 44 44 H 1.08993 * 109.87995 * 97.22291 * 19 18 16 45 45 H 1.08999 * 109.87913 * 218.23263 * 19 18 16 46 46 H 0.97004 * 119.99542 * 180.02562 * 24 23 21 47 47 H 1.08995 * 110.36433 * 265.28695 * 29 20 19 48 48 H 1.08998 * 110.36295 * 142.96559 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5009 2.3817 -0.6312 7 6 0.9615 2.8185 1.4293 8 8 0.3131 4.0932 1.4335 9 6 1.1291 5.1559 0.9333 10 6 1.5546 4.8334 -0.5016 11 7 2.2521 3.5395 -0.5212 12 6 2.7281 3.2184 -1.8733 13 6 3.9289 4.1031 -2.2148 14 9 3.5160 5.4370 -2.3003 15 9 4.8992 3.9784 -1.2147 16 6 2.1976 -1.2687 0.0006 17 1 3.2737 -1.0961 -0.0119 18 6 1.7891 -2.1462 1.2132 19 6 2.0716 -3.5789 0.7138 20 7 2.0628 -3.5385 -0.7558 21 6 2.2926 -4.6039 -1.5849 22 1 2.2634 -4.4706 -2.6562 23 6 2.5632 -5.8552 -1.0482 24 7 2.5983 -6.0177 0.2574 25 14 2.8774 -7.3084 -2.1791 26 1 4.3291 -7.3975 -2.4788 27 1 2.4316 -8.5589 -1.5137 28 1 2.1213 -7.1240 -3.4439 29 6 1.7646 -2.1613 -1.1892 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 0.2729 2.0586 1.7989 34 1 1.8419 2.8558 2.0709 35 1 2.0142 5.2612 1.5605 36 1 0.5623 6.0869 0.9443 37 1 2.2231 5.6130 -0.8668 38 1 0.6725 4.7810 -1.1398 39 1 3.0254 2.1706 -1.9147 40 1 1.9285 3.3980 -2.5921 41 1 4.3499 3.7910 -3.1705 42 1 2.4037 -1.9127 2.0826 43 1 0.7310 -2.0191 1.4422 44 1 3.0471 -3.9099 1.0698 45 1 1.2967 -4.2561 1.0729 46 1 2.7877 -6.8920 0.6324 47 1 0.6978 -2.0466 -1.3809 48 1 2.3401 -1.9111 -2.0803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033297475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:46 Heat of formation + Delta-G solvation = -122.156619 kcal Electronic energy + Delta-G solvation = -32802.982768 eV Core-core repulsion = 28144.609350 eV Total energy + Delta-G solvation = -4658.373418 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.06394 -47.00364 -40.84318 -39.07137 -37.41051 -36.02173 -34.92138 -32.47688 -31.50084 -30.64775 -29.25567 -27.69758 -26.86665 -26.43793 -25.17624 -24.21892 -22.64219 -21.71583 -20.21512 -20.17731 -18.92611 -17.85536 -17.67699 -17.30005 -17.05861 -16.96838 -16.51322 -16.28301 -15.79031 -15.32910 -14.97655 -14.72145 -14.65781 -14.21517 -14.11928 -14.04754 -13.96602 -13.42427 -13.36181 -13.18329 -12.80478 -12.65403 -12.58142 -12.48973 -12.17020 -12.04266 -12.01044 -11.79068 -11.71176 -11.38028 -10.98571 -10.90276 -10.81342 -10.76946 -10.36157 -10.13755 -10.07275 -9.88283 -9.75897 -9.54275 -8.78282 -8.67515 -8.44973 -6.89409 -5.75885 -3.10502 2.51629 2.79160 3.22650 3.37858 3.42731 3.44568 3.55382 3.67282 4.04243 4.25586 4.36602 4.46797 4.50700 4.57447 4.62383 4.73012 4.87824 4.91885 5.09927 5.16451 5.24084 5.27497 5.34837 5.35767 5.38519 5.46304 5.49699 5.55707 5.58549 5.64834 5.69903 5.80770 6.16099 6.20477 6.31013 6.42691 6.47018 6.48273 6.60916 6.73245 6.89103 7.44736 7.51040 7.55752 7.77635 8.17522 8.21689 9.16318 9.76246 10.40728 11.35539 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.002706 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.240366 B =10345.819095 C =11353.203189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.598 5.598 3 C 0.513 3.487 4 O -0.514 6.514 5 C 0.032 3.968 6 H 0.075 0.925 7 C 0.078 3.922 8 O -0.379 6.379 9 C 0.062 3.938 10 C 0.003 3.997 11 N -0.509 5.509 12 C -0.002 4.002 13 C 0.274 3.726 14 F -0.210 7.210 15 F -0.187 7.187 16 C 0.123 3.877 17 H 0.107 0.893 18 C -0.152 4.152 19 C 0.179 3.821 20 N -0.602 5.602 21 C -0.231 4.231 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.046 0.954 46 H 0.253 0.747 47 H 0.022 0.978 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 23.081 -1.355 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.332 5.332 3 C 0.299 3.701 4 O -0.389 6.389 5 C -0.080 4.080 6 H 0.093 0.907 7 C 0.001 3.999 8 O -0.297 6.297 9 C -0.015 4.015 10 C -0.124 4.124 11 N -0.234 5.234 12 C -0.130 4.130 13 C 0.220 3.780 14 F -0.191 7.191 15 F -0.168 7.168 16 C 0.019 3.981 17 H 0.125 0.875 18 C -0.191 4.191 19 C 0.054 3.946 20 N -0.329 5.329 21 C -0.359 4.359 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.568 5.568 25 Si 0.744 3.256 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.064 0.936 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.470 22.924 -0.929 23.374 hybrid contribution -0.363 -0.913 -1.170 1.528 sum -4.833 22.011 -2.098 22.633 Atomic orbital electron populations 1.21939 0.79892 1.03580 1.02147 1.47876 1.06942 1.05952 1.72390 1.20099 0.88135 0.84470 0.77410 1.90749 1.13211 1.86709 1.48199 1.22399 0.94947 0.90783 0.99834 0.90701 1.22530 0.98682 0.85990 0.92726 1.88012 1.40711 1.16299 1.84637 1.22722 0.95589 0.90346 0.92850 1.23265 0.98399 0.92210 0.98551 1.61831 1.38168 1.01601 1.21834 1.23364 0.96653 1.02504 0.90528 1.21850 0.87003 0.78006 0.91161 1.92870 1.90871 1.38670 1.96717 1.93040 1.64011 1.95552 1.64223 1.22484 0.97426 0.80796 0.97357 0.87462 1.23226 1.00435 0.98475 0.96941 1.21145 1.01035 0.89153 0.83238 1.44377 1.83354 1.03070 1.02111 1.19039 1.41594 0.86301 0.88993 0.90400 1.24814 1.01767 0.97636 0.96051 1.69955 1.55119 1.22589 1.09106 0.86101 0.78000 0.82099 0.79429 1.21520 1.21628 1.20688 1.21747 0.97211 0.86091 0.94541 0.92264 0.91429 0.89659 0.87588 0.91236 0.91823 0.88022 0.87343 0.93597 0.86745 0.91718 0.86969 0.91857 0.92089 0.93299 0.93622 0.93652 0.96058 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 8.54 59.85 0.51 1.21 16 2 N -0.60 -8.30 2.91 -171.48 -0.50 -8.80 16 3 C 0.51 7.26 5.79 -10.99 -0.06 7.19 16 4 O -0.51 -9.22 14.56 5.55 0.08 -9.14 16 5 C 0.03 0.36 1.67 -68.75 -0.11 0.24 16 6 H 0.08 0.72 6.20 -51.93 -0.32 0.40 16 7 C 0.08 0.82 6.22 37.21 0.23 1.05 16 8 O -0.38 -3.94 10.83 -35.23 -0.38 -4.32 16 9 C 0.06 0.54 7.01 37.21 0.26 0.80 16 10 C 0.00 0.03 5.33 -3.71 -0.02 0.01 16 11 N -0.51 -5.72 4.03 -227.73 -0.92 -6.64 16 12 C 0.00 -0.02 4.96 -3.82 -0.02 -0.04 16 13 C 0.27 2.67 5.56 37.16 0.21 2.88 16 14 F -0.21 -2.06 14.55 2.25 0.03 -2.03 16 15 F -0.19 -2.53 17.15 2.25 0.04 -2.49 16 16 C 0.12 2.17 3.46 -65.78 -0.23 1.94 16 17 H 0.11 2.15 7.01 -51.93 -0.36 1.78 16 18 C -0.15 -2.75 6.53 -24.89 -0.16 -2.92 16 19 C 0.18 4.25 5.37 -3.06 -0.02 4.24 16 20 N -0.60 -15.06 3.39 -170.07 -0.58 -15.63 16 21 C -0.23 -6.35 10.28 -15.05 -0.15 -6.50 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -26.68 10.31 55.49 0.57 -26.11 16 25 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 C 0.13 2.62 6.80 -2.53 -0.02 2.61 16 30 H 0.06 0.54 7.76 -51.93 -0.40 0.14 16 31 H 0.07 0.55 5.90 -51.93 -0.31 0.24 16 32 H 0.08 0.97 6.11 -51.93 -0.32 0.65 16 33 H 0.11 0.95 7.28 -51.93 -0.38 0.57 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.11 0.97 5.47 -51.93 -0.28 0.69 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 1.39 5.77 -51.93 -0.30 1.09 16 40 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.00 7.17 -51.93 -0.37 0.62 16 44 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 45 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.02 0.41 6.09 -51.93 -0.32 0.09 16 48 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -33.04 372.42 -7.80 -40.84 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.06 Total: -0.56 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 0.32 Total: 12.44 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -1.42 Total: -57.18 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.30 Total: -13.46 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.07 Total: -4.52 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.04 -7.80 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033297475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.314 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds