Wall clock time and date at job start Wed Apr 1 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99855 * 2 1 4 4 O 1.21284 * 120.00329 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00375 * 359.97438 * 3 2 1 6 6 H 1.09004 * 109.50555 * 322.16320 * 5 3 2 7 7 C 1.53103 * 109.50180 * 82.28511 * 5 3 2 8 8 O 1.43019 * 109.25286 * 176.78422 * 7 5 3 9 9 C 1.43011 * 113.74144 * 301.33173 * 8 7 5 10 10 C 1.53102 * 109.25713 * 58.67340 * 9 8 7 11 11 N 1.47004 * 109.25648 * 303.15076 * 10 9 8 12 12 C 1.46901 * 111.00251 * 182.39320 * 11 10 9 13 13 C 1.53004 * 109.46811 * 73.29796 * 12 11 10 14 14 F 1.39901 * 109.47304 * 293.80831 * 13 12 11 15 15 F 1.39902 * 109.47162 * 53.81104 * 13 12 11 16 16 C 1.46500 * 120.00471 * 179.97438 * 2 1 3 17 17 H 1.08991 * 110.89138 * 179.30016 * 16 2 1 18 18 C 1.55160 * 111.00342 * 303.18709 * 16 2 1 19 19 C 1.54331 * 102.94070 * 153.61227 * 18 16 2 20 20 N 1.47018 * 107.27058 * 337.80102 * 19 18 16 21 21 C 1.36942 * 125.64968 * 178.98790 * 20 19 18 22 22 H 1.07994 * 120.00234 * 179.97438 * 21 20 19 23 23 C 1.38819 * 119.99463 * 359.97438 * 21 20 19 24 24 N 1.31614 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99633 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47249 * 89.99763 * 25 23 21 27 27 H 1.48501 * 109.47198 * 209.99796 * 25 23 21 28 28 H 1.48507 * 109.47563 * 329.99944 * 25 23 21 29 29 C 1.47430 * 108.70450 * 358.94628 * 20 19 18 30 30 H 1.08996 * 109.47332 * 270.00056 * 1 2 3 31 31 H 1.08997 * 109.46866 * 30.00278 * 1 2 3 32 32 H 1.09000 * 109.46852 * 150.00267 * 1 2 3 33 33 H 1.08997 * 109.51319 * 296.72138 * 7 5 3 34 34 H 1.09004 * 109.50499 * 56.85675 * 7 5 3 35 35 H 1.08991 * 109.50848 * 298.73598 * 9 8 7 36 36 H 1.09007 * 109.53969 * 178.62611 * 9 8 7 37 37 H 1.08999 * 109.50285 * 183.21022 * 10 9 8 38 38 H 1.09002 * 109.50812 * 63.08460 * 10 9 8 39 39 H 1.08997 * 109.47769 * 193.29915 * 12 11 10 40 40 H 1.09001 * 109.46634 * 313.30420 * 12 11 10 41 41 H 1.08998 * 109.46867 * 173.80861 * 13 12 11 42 42 H 1.08997 * 110.71693 * 271.96890 * 18 16 2 43 43 H 1.08997 * 110.72192 * 35.24305 * 18 16 2 44 44 H 1.08993 * 109.87995 * 97.22291 * 19 18 16 45 45 H 1.08999 * 109.87913 * 218.23263 * 19 18 16 46 46 H 0.97004 * 119.99542 * 180.02562 * 24 23 21 47 47 H 1.08995 * 110.36433 * 265.28695 * 29 20 19 48 48 H 1.08998 * 110.36295 * 142.96559 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5009 2.3817 -0.6312 7 6 0.9615 2.8185 1.4293 8 8 0.3131 4.0932 1.4335 9 6 1.1291 5.1559 0.9333 10 6 1.5546 4.8334 -0.5016 11 7 2.2521 3.5395 -0.5212 12 6 2.7281 3.2184 -1.8733 13 6 3.9289 4.1031 -2.2148 14 9 3.5160 5.4370 -2.3003 15 9 4.8992 3.9784 -1.2147 16 6 2.1976 -1.2687 0.0006 17 1 3.2737 -1.0961 -0.0119 18 6 1.7891 -2.1462 1.2132 19 6 2.0716 -3.5789 0.7138 20 7 2.0628 -3.5385 -0.7558 21 6 2.2926 -4.6039 -1.5849 22 1 2.2634 -4.4706 -2.6562 23 6 2.5632 -5.8552 -1.0482 24 7 2.5983 -6.0177 0.2574 25 14 2.8774 -7.3084 -2.1791 26 1 4.3291 -7.3975 -2.4788 27 1 2.4316 -8.5589 -1.5137 28 1 2.1213 -7.1240 -3.4439 29 6 1.7646 -2.1613 -1.1892 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 0.2729 2.0586 1.7989 34 1 1.8419 2.8558 2.0709 35 1 2.0142 5.2612 1.5605 36 1 0.5623 6.0869 0.9443 37 1 2.2231 5.6130 -0.8668 38 1 0.6725 4.7810 -1.1398 39 1 3.0254 2.1706 -1.9147 40 1 1.9285 3.3980 -2.5921 41 1 4.3499 3.7910 -3.1705 42 1 2.4037 -1.9127 2.0826 43 1 0.7310 -2.0191 1.4422 44 1 3.0471 -3.9099 1.0698 45 1 1.2967 -4.2561 1.0729 46 1 2.7877 -6.8920 0.6324 47 1 0.6978 -2.0466 -1.3809 48 1 2.3401 -1.9111 -2.0803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033297475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:41 Heat of formation + Delta-G solvation = -145.728500 kcal Electronic energy + Delta-G solvation = -32804.004922 eV Core-core repulsion = 28144.609350 eV Total energy + Delta-G solvation = -4659.395572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.87103 -47.85691 -41.84036 -40.13280 -38.85304 -36.89950 -36.27162 -34.19735 -32.57638 -31.41285 -31.01957 -29.20322 -27.88267 -27.33124 -26.57945 -25.57883 -23.40657 -22.76708 -22.04880 -21.33498 -20.08559 -18.95974 -18.75305 -18.56606 -18.23042 -17.78963 -17.42136 -17.20166 -16.81957 -16.61033 -16.25144 -15.96730 -15.82801 -15.47997 -15.28353 -15.00134 -14.82740 -14.61243 -14.42234 -14.21868 -14.13091 -13.98786 -13.80059 -13.61487 -13.40934 -13.33453 -12.96707 -12.89015 -12.77579 -12.74817 -12.52790 -12.31031 -12.10562 -12.09421 -12.03405 -11.80519 -11.52566 -11.49498 -10.96735 -10.73195 -10.59821 -9.69079 -9.53744 -8.91447 -7.86591 -5.23307 1.43227 1.46196 1.48140 1.56406 1.72496 2.41686 2.49737 2.80377 2.93293 3.32038 3.32690 3.39524 3.54942 3.65176 3.70174 3.78415 3.90993 3.92580 3.96755 4.01294 4.17418 4.19079 4.23995 4.28757 4.41981 4.50608 4.57139 4.60530 4.62093 4.65389 4.68054 4.81670 4.82818 4.90020 4.94803 4.99380 5.12824 5.42397 5.47495 5.58299 5.61686 5.72369 5.75570 5.99831 6.16900 6.36766 7.07119 7.09413 7.73736 8.37122 9.23450 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.002706 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.240366 B =10345.819095 C =11353.203189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.595 5.595 3 C 0.515 3.485 4 O -0.558 6.558 5 C 0.043 3.957 6 H 0.099 0.901 7 C 0.081 3.919 8 O -0.382 6.382 9 C 0.058 3.942 10 C 0.008 3.992 11 N -0.533 5.533 12 C -0.001 4.001 13 C 0.268 3.732 14 F -0.209 7.209 15 F -0.213 7.213 16 C 0.141 3.859 17 H 0.079 0.921 18 C -0.133 4.133 19 C 0.188 3.812 20 N -0.625 5.625 21 C -0.244 4.244 22 H 0.083 0.917 23 C -0.064 4.064 24 N -0.950 5.950 25 Si 0.979 3.021 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.133 3.867 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.146 0.854 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.007 0.993 45 H 0.016 0.984 46 H 0.247 0.753 47 H 0.045 0.955 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 25.007 -2.462 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.327 5.327 3 C 0.302 3.698 4 O -0.435 6.435 5 C -0.068 4.068 6 H 0.117 0.883 7 C 0.003 3.997 8 O -0.300 6.300 9 C -0.018 4.018 10 C -0.119 4.119 11 N -0.260 5.260 12 C -0.129 4.129 13 C 0.214 3.786 14 F -0.191 7.191 15 F -0.195 7.195 16 C 0.036 3.964 17 H 0.097 0.903 18 C -0.172 4.172 19 C 0.063 3.937 20 N -0.352 5.352 21 C -0.373 4.373 22 H 0.101 0.899 23 C -0.257 4.257 24 N -0.599 5.599 25 Si 0.807 3.193 26 H -0.215 1.215 27 H -0.220 1.220 28 H -0.191 1.191 29 C 0.007 3.993 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.163 0.837 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.026 0.974 45 H 0.034 0.966 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.619 24.903 -2.054 25.850 hybrid contribution 0.296 -1.427 -0.850 1.687 sum -6.323 23.477 -2.904 24.486 Atomic orbital electron populations 1.22230 0.77187 1.04757 1.03919 1.47828 1.08367 1.04373 1.72128 1.20661 0.87725 0.85337 0.76027 1.90738 1.15406 1.87324 1.50051 1.22334 0.94930 0.88786 1.00765 0.88344 1.22529 0.98480 0.86758 0.91924 1.88015 1.40905 1.16381 1.84742 1.22885 0.95610 0.90921 0.92402 1.23270 0.98664 0.91021 0.98947 1.61808 1.39074 1.02425 1.22648 1.23342 0.97494 1.01222 0.90859 1.22237 0.86588 0.77973 0.91766 1.92865 1.90837 1.38669 1.96697 1.92986 1.65164 1.95711 1.65616 1.21911 0.96385 0.82297 0.95808 0.90297 1.23025 1.02292 0.94700 0.97144 1.20866 0.97794 0.92033 0.83040 1.44657 1.83367 1.04618 1.02533 1.19441 1.40818 0.87328 0.89739 0.89870 1.25663 1.02254 1.00331 0.97477 1.70176 1.56321 1.22630 1.10737 0.85070 0.77660 0.78480 0.78055 1.21547 1.21972 1.19108 1.21872 0.98243 0.84095 0.95137 0.90204 0.88392 0.90330 0.85756 0.93159 0.92897 0.85412 0.87398 0.92173 0.88967 0.89090 0.83661 0.91025 0.89324 0.97423 0.96552 0.94324 0.93714 0.94754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 8.54 127.77 1.09 2.12 16 2 N -0.59 -15.29 2.91 -814.84 -2.37 -17.66 16 3 C 0.51 13.85 5.79 87.66 0.51 14.36 16 4 O -0.56 -20.16 14.56 -3.04 -0.04 -20.20 16 5 C 0.04 0.85 1.67 44.18 0.07 0.92 16 6 H 0.10 1.47 6.20 -2.39 -0.01 1.45 16 7 C 0.08 1.49 6.22 72.02 0.45 1.93 16 8 O -0.38 -6.84 10.83 -148.98 -1.61 -8.45 16 9 C 0.06 0.87 7.01 72.02 0.50 1.37 16 10 C 0.01 0.12 5.33 86.32 0.46 0.58 16 11 N -0.53 -11.00 4.03 -874.39 -3.53 -14.52 16 12 C 0.00 -0.01 4.96 86.30 0.43 0.42 16 13 C 0.27 4.86 5.56 71.98 0.40 5.26 16 14 F -0.21 -3.73 14.55 44.97 0.65 -3.07 16 15 F -0.21 -5.77 17.15 44.97 0.77 -5.00 16 16 C 0.14 4.91 3.46 46.39 0.16 5.07 16 17 H 0.08 3.24 7.01 -2.39 -0.02 3.22 16 18 C -0.13 -4.74 6.53 31.79 0.21 -4.54 16 19 C 0.19 9.21 5.37 86.73 0.47 9.67 16 20 N -0.62 -31.76 3.39 -691.98 -2.35 -34.11 16 21 C -0.24 -13.61 10.28 84.03 0.86 -12.75 16 22 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 23 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 24 N -0.95 -56.99 10.31 21.65 0.22 -56.77 16 25 Si 0.98 45.51 29.55 68.60 2.03 47.53 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 C 0.13 5.23 6.80 86.85 0.59 5.82 16 30 H 0.08 1.09 7.76 -2.39 -0.02 1.08 16 31 H 0.10 1.11 5.90 -2.39 -0.01 1.09 16 32 H 0.08 1.50 6.11 -2.39 -0.01 1.49 16 33 H 0.12 1.78 7.28 -2.39 -0.02 1.76 16 34 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.11 1.69 5.47 -2.39 -0.01 1.68 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 2.17 5.77 -2.39 -0.01 2.16 16 40 H 0.09 1.18 8.03 -2.39 -0.02 1.16 16 41 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.09 2.69 7.17 -2.39 -0.02 2.68 16 44 H 0.01 0.42 7.38 -2.39 -0.02 0.40 16 45 H 0.02 0.88 7.50 -2.39 -0.02 0.86 16 46 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.05 1.60 6.09 -2.39 -0.01 1.58 16 48 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.04 372.42 1.42 -73.62 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.98 Total: 11.55 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 6.67 Total: 27.08 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -8.02 Total: -123.06 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.66 Total: -28.66 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 1.43 Total: -8.07 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.04 1.42 -73.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033297475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.108 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds