Wall clock time and date at job start Wed Apr 1 2020 04:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46792 * 2 1 4 4 C 1.34779 * 120.00464 * 276.16023 * 3 2 1 5 5 O 1.21276 * 120.00435 * 184.59657 * 4 3 2 6 6 C 1.50705 * 119.99527 * 4.60442 * 4 3 2 7 7 H 1.09000 * 109.09767 * 30.18399 * 6 4 3 8 8 C 1.53333 * 109.10370 * 271.13704 * 6 4 3 9 9 C 1.50647 * 107.87852 * 282.28038 * 8 6 4 10 10 C 1.33056 * 130.79901 * 153.09466 * 9 8 6 11 11 N 1.34736 * 108.03535 * 179.34210 * 10 9 8 12 12 C 1.30825 * 109.53834 * 0.02562 * 11 10 9 13 13 N 1.35046 * 108.33581 * 0.21857 * 12 11 10 14 14 C 1.34575 * 131.29597 * 179.32855 * 13 12 11 15 15 O 1.21490 * 120.70109 * 9.28577 * 14 13 12 16 16 N 1.34822 * 118.59737 * 189.30155 * 14 13 12 17 17 C 1.46505 * 120.00040 * 96.16541 * 3 2 1 18 18 H 1.09001 * 110.88720 * 182.03776 * 17 3 2 19 19 C 1.55163 * 110.99889 * 305.91187 * 17 3 2 20 20 C 1.54331 * 102.93650 * 153.57812 * 19 17 3 21 21 N 1.47022 * 107.27128 * 337.80420 * 20 19 17 22 22 C 1.36937 * 125.64762 * 178.98585 * 21 20 19 23 23 H 1.07998 * 120.00333 * 179.97438 * 22 21 20 24 24 C 1.38810 * 120.00010 * 359.97438 * 22 21 20 25 25 N 1.31619 * 120.00086 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00194 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46853 * 59.99824 * 26 24 22 28 28 H 1.48503 * 109.47042 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46888 * 299.99939 * 26 24 22 30 30 C 1.47424 * 108.70379 * 358.94418 * 21 20 19 31 31 H 1.08995 * 109.47497 * 304.88207 * 1 2 3 32 32 H 1.08996 * 109.47699 * 64.89008 * 1 2 3 33 33 H 1.09003 * 109.46976 * 184.88761 * 1 2 3 34 34 H 1.08999 * 109.47073 * 240.00484 * 2 1 3 35 35 H 1.08992 * 109.47574 * 119.99877 * 2 1 3 36 36 H 1.09002 * 109.77782 * 41.87077 * 8 6 4 37 37 H 1.09000 * 109.77655 * 162.68095 * 8 6 4 38 38 H 1.08006 * 125.98684 * 359.33946 * 10 9 8 39 39 H 1.08002 * 125.83000 * 180.23507 * 12 11 10 40 40 H 0.97004 * 118.55458 * 191.81304 * 16 14 13 41 41 H 1.08989 * 110.72089 * 271.93699 * 19 17 3 42 42 H 1.08998 * 110.71800 * 35.21713 * 19 17 3 43 43 H 1.08993 * 109.88351 * 97.22770 * 20 19 17 44 44 H 1.08998 * 109.87853 * 218.39093 * 20 19 17 45 45 H 0.97000 * 120.00381 * 179.97438 * 25 24 22 46 46 H 1.08997 * 110.36550 * 265.28243 * 30 21 20 47 47 H 1.09001 * 110.36451 * 142.95964 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1247 2.0584 -1.1604 5 8 2.6067 3.1713 -1.1711 6 6 1.6448 1.4328 -2.4447 7 1 0.8165 0.7590 -2.2254 8 6 2.7911 0.6295 -3.0707 9 6 3.7292 1.6032 -3.7351 10 6 5.0327 1.5196 -3.9884 11 7 5.4089 2.6506 -4.6167 12 6 4.3730 3.4365 -4.7607 13 7 3.2975 2.8253 -4.2188 14 6 2.0161 3.2199 -4.1036 15 8 1.6208 4.2178 -4.6726 16 7 1.1803 2.4845 -3.3431 17 6 2.3908 2.0265 1.2614 18 1 2.6979 3.0588 1.0940 19 6 1.2303 1.9512 2.2885 20 6 1.9645 2.0125 3.6446 21 7 3.3494 1.5775 3.4113 22 6 4.3348 1.5087 4.3596 23 1 5.3247 1.1743 4.0865 24 6 4.0614 1.8687 5.6720 25 7 2.8551 2.2767 6.0049 26 14 5.4059 1.7755 6.9656 27 1 6.5298 2.6647 6.5763 28 1 4.8620 2.2111 8.2770 29 1 5.8947 0.3773 7.0716 30 6 3.5011 1.2267 1.9874 31 1 -0.3634 0.5877 0.8430 32 1 -0.3634 0.4361 -0.9305 33 1 -0.3633 -1.0240 0.0876 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.3214 0.0775 -2.2946 37 1 2.3938 -0.0641 -3.8116 38 1 5.6766 0.6904 -3.7347 39 1 4.3771 4.4079 -5.2325 40 1 0.2281 2.6619 -3.3960 41 1 0.5588 2.8021 2.1748 42 1 0.6857 1.0124 2.1870 43 1 1.9558 3.0339 4.0250 44 1 1.4815 1.3450 4.3582 45 1 2.6639 2.5280 6.9220 46 1 3.3542 0.1564 1.8427 47 1 4.4841 1.5279 1.6252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033904770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:43 Heat of formation + Delta-G solvation = 53.850668 kcal Electronic energy + Delta-G solvation = -31962.310145 eV Core-core repulsion = 27762.258162 eV Total energy + Delta-G solvation = -4200.051983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -43.33064 -40.60223 -39.47478 -37.76637 -36.34136 -35.52235 -33.34054 -32.48369 -32.12534 -30.64612 -29.56248 -28.99181 -27.24548 -25.21863 -24.62231 -24.26477 -23.41189 -21.74931 -21.33361 -20.19549 -19.65114 -19.07056 -18.30644 -17.82566 -17.26861 -17.02794 -16.68981 -16.12164 -15.67287 -15.23098 -14.90005 -14.69210 -14.40745 -14.32192 -14.12178 -13.91357 -13.84073 -13.36777 -13.23572 -13.11806 -12.82899 -12.65137 -12.45272 -12.26774 -12.04675 -11.69482 -11.32586 -11.14632 -10.98647 -10.97411 -10.81414 -10.64840 -10.46026 -10.43037 -10.29924 -10.16292 -9.88432 -9.77481 -9.43019 -8.86358 -8.69695 -8.56611 -6.91378 -5.77060 -3.11696 0.90739 1.85924 2.40541 2.54191 2.70763 2.94051 3.04243 3.38130 3.42787 3.43661 3.95309 4.01152 4.11099 4.35656 4.46044 4.49292 4.57191 4.69614 4.91843 4.94450 5.08391 5.09375 5.15953 5.31122 5.35576 5.47377 5.50345 5.54053 5.54772 5.66796 5.69957 5.93291 6.00192 6.11321 6.20903 6.22995 6.35833 6.36936 6.46453 6.58194 6.78858 6.81815 7.34070 7.46927 7.48115 7.51924 7.70136 7.75149 8.01943 8.18567 9.15133 9.75078 10.39044 11.34347 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.002916 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.452846 B = 9601.191169 C =10378.180092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.093 3.907 3 N -0.590 5.590 4 C 0.496 3.504 5 O -0.523 6.523 6 C 0.116 3.884 7 H 0.130 0.870 8 C -0.052 4.052 9 C -0.034 4.034 10 C 0.013 3.987 11 N -0.482 5.482 12 C 0.256 3.744 13 N -0.452 5.452 14 C 0.737 3.263 15 O -0.531 6.531 16 N -0.705 5.705 17 C 0.124 3.876 18 H 0.105 0.895 19 C -0.155 4.155 20 C 0.179 3.821 21 N -0.602 5.602 22 C -0.232 4.232 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.922 5.922 26 Si 0.913 3.087 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.284 1.284 30 C 0.132 3.868 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.181 0.819 39 H 0.219 0.781 40 H 0.424 0.576 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.254 0.746 46 H 0.022 0.978 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.811 -8.308 -20.190 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 N -0.323 5.323 4 C 0.280 3.720 5 O -0.398 6.398 6 C 0.006 3.994 7 H 0.148 0.852 8 C -0.091 4.091 9 C -0.140 4.140 10 C -0.129 4.129 11 N -0.199 5.199 12 C -0.027 4.027 13 N -0.157 5.157 14 C 0.438 3.562 15 O -0.403 6.403 16 N -0.362 5.362 17 C 0.020 3.980 18 H 0.123 0.877 19 C -0.194 4.194 20 C 0.054 3.946 21 N -0.329 5.329 22 C -0.360 4.360 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.569 5.569 26 Si 0.744 3.256 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.211 1.211 30 C 0.005 3.995 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.198 0.802 39 H 0.235 0.765 40 H 0.263 0.737 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.868 -6.899 -20.503 22.415 hybrid contribution -0.596 -0.141 1.211 1.357 sum -6.463 -7.040 -19.292 21.530 Atomic orbital electron populations 1.22458 0.95710 1.02960 1.02683 1.21712 0.94577 0.82686 1.04048 1.47956 1.63969 1.13834 1.06513 1.20804 0.79591 0.86454 0.85149 1.90756 1.43440 1.19637 1.85960 1.21283 1.00124 0.89517 0.88438 0.85209 1.20542 0.92832 0.95148 1.00580 1.21243 0.96607 0.88975 1.07224 1.21884 0.91865 0.97841 1.01293 1.70784 1.27385 1.03369 1.18373 1.25336 0.79402 1.00101 0.97821 1.43746 1.09283 1.16825 1.45873 1.15540 0.79512 0.82046 0.79058 1.91024 1.75479 1.23787 1.49962 1.44709 1.10555 1.37968 1.42940 1.22498 0.96386 0.98268 0.80839 0.87744 1.23355 0.97281 1.01006 0.97739 1.21150 0.83442 1.00039 0.89928 1.44363 1.08249 1.77758 1.02504 1.19004 0.90581 1.38626 0.87755 0.90401 1.24805 0.96970 1.01156 0.97257 1.69937 1.18943 1.50157 1.17866 0.86181 0.80805 0.77802 0.80861 1.21077 1.21551 1.21099 1.21745 0.95806 0.95725 0.86232 0.90806 0.92939 0.91074 0.90759 0.88431 0.86571 0.87552 0.80201 0.76463 0.73670 0.92049 0.91481 0.93379 0.93594 0.93616 0.96065 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 9.72 37.16 0.36 -0.87 16 2 C 0.09 0.77 4.84 -4.04 -0.02 0.75 16 3 N -0.59 -7.31 2.53 -163.67 -0.41 -7.72 16 4 C 0.50 6.36 6.44 -10.98 -0.07 6.29 16 5 O -0.52 -9.40 15.49 5.56 0.09 -9.32 16 6 C 0.12 0.93 2.77 -69.23 -0.19 0.74 16 7 H 0.13 0.58 4.95 -51.93 -0.26 0.32 16 8 C -0.05 -0.35 5.55 -27.74 -0.15 -0.50 16 9 C -0.03 -0.36 6.38 -81.48 -0.52 -0.88 16 10 C 0.01 0.15 11.83 -18.08 -0.21 -0.07 16 11 N -0.48 -6.29 11.27 -14.82 -0.17 -6.46 16 12 C 0.26 3.15 12.53 -90.10 -1.13 2.02 16 13 N -0.45 -5.65 2.85 -64.89 -0.19 -5.84 16 14 C 0.74 9.51 7.86 -87.06 -0.68 8.83 16 15 O -0.53 -8.21 17.75 5.37 0.10 -8.11 16 16 N -0.71 -6.71 4.92 -60.08 -0.30 -7.00 16 17 C 0.12 2.10 3.44 -65.78 -0.23 1.88 16 18 H 0.10 2.10 7.03 -51.93 -0.36 1.74 16 19 C -0.15 -2.67 6.11 -24.89 -0.15 -2.82 16 20 C 0.18 4.16 5.37 -3.06 -0.02 4.14 16 21 N -0.60 -14.85 3.39 -170.08 -0.58 -15.43 16 22 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 23 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 24 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 25 N -0.92 -26.52 10.31 55.49 0.57 -25.95 16 26 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 C 0.13 2.59 6.78 -2.53 -0.02 2.58 16 31 H 0.07 0.67 5.86 -51.93 -0.30 0.37 16 32 H 0.05 0.28 6.26 -51.93 -0.33 -0.05 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.37 5.90 -51.93 -0.31 0.07 16 35 H 0.10 0.96 6.31 -51.93 -0.33 0.63 16 36 H 0.12 0.64 7.16 -51.93 -0.37 0.27 16 37 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.22 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.42 3.07 8.90 -40.82 -0.36 2.70 16 41 H 0.06 1.02 8.14 -51.94 -0.42 0.59 16 42 H 0.07 1.00 5.21 -51.93 -0.27 0.73 16 43 H 0.05 1.27 7.38 -51.93 -0.38 0.88 16 44 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.39 6.32 -51.93 -0.33 0.06 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -37.00 368.37 -9.72 -46.71 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.07 Total: 1.40 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: -3.28 Total: 15.37 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -1.07 Total: -68.40 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.18 Total: -17.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.00 -9.72 -46.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033904770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.565 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds