Wall clock time and date at job start Wed Apr 1 2020 04:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46792 * 2 1 4 4 C 1.34779 * 120.00464 * 276.16023 * 3 2 1 5 5 O 1.21276 * 120.00435 * 184.59657 * 4 3 2 6 6 C 1.50705 * 119.99527 * 4.60442 * 4 3 2 7 7 H 1.09000 * 109.09767 * 30.18399 * 6 4 3 8 8 C 1.53333 * 109.10370 * 271.13704 * 6 4 3 9 9 C 1.50647 * 107.87852 * 282.28038 * 8 6 4 10 10 C 1.33056 * 130.79901 * 153.09466 * 9 8 6 11 11 N 1.34736 * 108.03535 * 179.34210 * 10 9 8 12 12 C 1.30825 * 109.53834 * 0.02562 * 11 10 9 13 13 N 1.35046 * 108.33581 * 0.21857 * 12 11 10 14 14 C 1.34575 * 131.29597 * 179.32855 * 13 12 11 15 15 O 1.21490 * 120.70109 * 9.28577 * 14 13 12 16 16 N 1.34822 * 118.59737 * 189.30155 * 14 13 12 17 17 C 1.46505 * 120.00040 * 96.16541 * 3 2 1 18 18 H 1.09001 * 110.88720 * 182.03776 * 17 3 2 19 19 C 1.55163 * 110.99889 * 305.91187 * 17 3 2 20 20 C 1.54331 * 102.93650 * 153.57812 * 19 17 3 21 21 N 1.47022 * 107.27128 * 337.80420 * 20 19 17 22 22 C 1.36937 * 125.64762 * 178.98585 * 21 20 19 23 23 H 1.07998 * 120.00333 * 179.97438 * 22 21 20 24 24 C 1.38810 * 120.00010 * 359.97438 * 22 21 20 25 25 N 1.31619 * 120.00086 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00194 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46853 * 59.99824 * 26 24 22 28 28 H 1.48503 * 109.47042 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46888 * 299.99939 * 26 24 22 30 30 C 1.47424 * 108.70379 * 358.94418 * 21 20 19 31 31 H 1.08995 * 109.47497 * 304.88207 * 1 2 3 32 32 H 1.08996 * 109.47699 * 64.89008 * 1 2 3 33 33 H 1.09003 * 109.46976 * 184.88761 * 1 2 3 34 34 H 1.08999 * 109.47073 * 240.00484 * 2 1 3 35 35 H 1.08992 * 109.47574 * 119.99877 * 2 1 3 36 36 H 1.09002 * 109.77782 * 41.87077 * 8 6 4 37 37 H 1.09000 * 109.77655 * 162.68095 * 8 6 4 38 38 H 1.08006 * 125.98684 * 359.33946 * 10 9 8 39 39 H 1.08002 * 125.83000 * 180.23507 * 12 11 10 40 40 H 0.97004 * 118.55458 * 191.81304 * 16 14 13 41 41 H 1.08989 * 110.72089 * 271.93699 * 19 17 3 42 42 H 1.08998 * 110.71800 * 35.21713 * 19 17 3 43 43 H 1.08993 * 109.88351 * 97.22770 * 20 19 17 44 44 H 1.08998 * 109.87853 * 218.39093 * 20 19 17 45 45 H 0.97000 * 120.00381 * 179.97438 * 25 24 22 46 46 H 1.08997 * 110.36550 * 265.28243 * 30 21 20 47 47 H 1.09001 * 110.36451 * 142.95964 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1247 2.0584 -1.1604 5 8 2.6067 3.1713 -1.1711 6 6 1.6448 1.4328 -2.4447 7 1 0.8165 0.7590 -2.2254 8 6 2.7911 0.6295 -3.0707 9 6 3.7292 1.6032 -3.7351 10 6 5.0327 1.5196 -3.9884 11 7 5.4089 2.6506 -4.6167 12 6 4.3730 3.4365 -4.7607 13 7 3.2975 2.8253 -4.2188 14 6 2.0161 3.2199 -4.1036 15 8 1.6208 4.2178 -4.6726 16 7 1.1803 2.4845 -3.3431 17 6 2.3908 2.0265 1.2614 18 1 2.6979 3.0588 1.0940 19 6 1.2303 1.9512 2.2885 20 6 1.9645 2.0125 3.6446 21 7 3.3494 1.5775 3.4113 22 6 4.3348 1.5087 4.3596 23 1 5.3247 1.1743 4.0865 24 6 4.0614 1.8687 5.6720 25 7 2.8551 2.2767 6.0049 26 14 5.4059 1.7755 6.9656 27 1 6.5298 2.6647 6.5763 28 1 4.8620 2.2111 8.2770 29 1 5.8947 0.3773 7.0716 30 6 3.5011 1.2267 1.9874 31 1 -0.3634 0.5877 0.8430 32 1 -0.3634 0.4361 -0.9305 33 1 -0.3633 -1.0240 0.0876 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.3214 0.0775 -2.2946 37 1 2.3938 -0.0641 -3.8116 38 1 5.6766 0.6904 -3.7347 39 1 4.3771 4.4079 -5.2325 40 1 0.2281 2.6619 -3.3960 41 1 0.5588 2.8021 2.1748 42 1 0.6857 1.0124 2.1870 43 1 1.9558 3.0339 4.0250 44 1 1.4815 1.3450 4.3582 45 1 2.6639 2.5280 6.9220 46 1 3.3542 0.1564 1.8427 47 1 4.4841 1.5279 1.6252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033904770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:35 Heat of formation + Delta-G solvation = 27.537961 kcal Electronic energy + Delta-G solvation = -31963.451149 eV Core-core repulsion = 27762.258162 eV Total energy + Delta-G solvation = -4201.192988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.17210 -41.60281 -40.45943 -39.17090 -37.28852 -36.78258 -34.38075 -34.07142 -32.96243 -31.62083 -31.06706 -30.08836 -28.71133 -26.61956 -25.81550 -25.19143 -24.21004 -22.59456 -22.53469 -22.00116 -20.68285 -20.02528 -19.19069 -18.98374 -18.66826 -18.16121 -17.66802 -17.12355 -16.78708 -16.51878 -16.16604 -15.88813 -15.68523 -15.43221 -15.16364 -14.78337 -14.64780 -14.60678 -14.33620 -14.08257 -13.90561 -13.79743 -13.63279 -13.49865 -13.30121 -12.94558 -12.77553 -12.61212 -12.33958 -12.15950 -12.09464 -12.05820 -11.81801 -11.77047 -11.53513 -11.41280 -11.36096 -11.34022 -10.71937 -10.37987 -9.73888 -9.63460 -8.91969 -7.87232 -5.23691 0.03201 1.02239 1.44729 1.46524 1.48645 1.54488 1.64118 1.85162 2.04141 2.21859 2.49139 3.21170 3.31658 3.37356 3.41464 3.62648 3.65315 3.78156 3.89837 3.96053 3.97180 4.12013 4.17557 4.24413 4.42155 4.45714 4.55336 4.56369 4.64381 4.69868 4.82116 4.85619 4.94180 4.96322 5.07727 5.16044 5.29488 5.41776 5.45632 5.52156 5.55938 5.60045 5.63448 5.71640 5.94492 6.16543 6.36739 6.62557 6.83522 7.03989 7.07569 7.73757 8.36591 9.22431 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.002916 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.452846 B = 9601.191169 C =10378.180092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 N -0.583 5.583 4 C 0.491 3.509 5 O -0.583 6.583 6 C 0.126 3.874 7 H 0.182 0.818 8 C -0.052 4.052 9 C -0.033 4.033 10 C -0.009 4.009 11 N -0.505 5.505 12 C 0.232 3.768 13 N -0.462 5.462 14 C 0.730 3.270 15 O -0.568 6.568 16 N -0.693 5.693 17 C 0.141 3.859 18 H 0.066 0.934 19 C -0.132 4.132 20 C 0.187 3.813 21 N -0.625 5.625 22 C -0.246 4.246 23 H 0.082 0.918 24 C -0.062 4.062 25 N -0.950 5.950 26 Si 0.978 3.022 27 H -0.282 1.282 28 H -0.294 1.294 29 H -0.272 1.272 30 C 0.133 3.867 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.154 0.846 38 H 0.205 0.795 39 H 0.229 0.771 40 H 0.436 0.564 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.003 0.997 44 H 0.018 0.982 45 H 0.247 0.753 46 H 0.051 0.949 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.868 -11.802 -21.778 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.039 4.039 3 N -0.315 5.315 4 C 0.278 3.722 5 O -0.461 6.461 6 C 0.017 3.983 7 H 0.199 0.801 8 C -0.090 4.090 9 C -0.140 4.140 10 C -0.150 4.150 11 N -0.223 5.223 12 C -0.050 4.050 13 N -0.167 5.167 14 C 0.432 3.568 15 O -0.443 6.443 16 N -0.349 5.349 17 C 0.036 3.964 18 H 0.085 0.915 19 C -0.171 4.171 20 C 0.062 3.938 21 N -0.352 5.352 22 C -0.375 4.375 23 H 0.100 0.900 24 C -0.255 4.255 25 N -0.598 5.598 26 Si 0.806 3.194 27 H -0.208 1.208 28 H -0.220 1.220 29 H -0.197 1.197 30 C 0.007 3.993 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.222 0.778 39 H 0.245 0.755 40 H 0.277 0.723 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.021 0.979 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.944 -10.473 -22.121 25.441 hybrid contribution -0.228 0.928 1.696 1.947 sum -7.171 -9.544 -20.425 23.658 Atomic orbital electron populations 1.22448 0.94087 1.04315 1.02833 1.22150 0.95931 0.79977 1.05863 1.47946 1.63569 1.15388 1.04571 1.21771 0.78292 0.85722 0.86462 1.90754 1.45985 1.22526 1.86871 1.21555 1.02370 0.89096 0.85243 0.80122 1.20920 0.91566 0.94543 1.01972 1.21955 0.97164 0.88733 1.06106 1.22393 0.92808 0.98061 1.01704 1.70747 1.28040 1.04434 1.19089 1.25662 0.79729 1.00888 0.98693 1.43863 1.09149 1.17630 1.46020 1.15811 0.79843 0.81980 0.79202 1.90989 1.76194 1.25433 1.51664 1.44714 1.10780 1.37624 1.41784 1.21849 0.95128 0.96420 0.83031 0.91528 1.23141 0.96895 1.03020 0.94054 1.20881 0.83676 0.96565 0.92681 1.44644 1.08337 1.77866 1.04356 1.19398 0.91459 1.37946 0.88690 0.90045 1.25632 0.99104 1.01489 0.99314 1.70161 1.20694 1.51302 1.17668 0.85171 0.78140 0.78207 0.77923 1.20813 1.21992 1.19742 1.21883 0.96119 0.97436 0.83834 0.93354 0.90638 0.88600 0.85980 0.89681 0.84441 0.82858 0.77796 0.75472 0.72340 0.91404 0.88249 0.97888 0.96386 0.94331 0.93123 0.95493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.72 71.98 0.70 -0.74 16 2 C 0.08 0.93 4.84 86.38 0.42 1.35 16 3 N -0.58 -12.68 2.53 -790.13 -2.00 -14.68 16 4 C 0.49 11.25 6.44 87.66 0.56 11.82 16 5 O -0.58 -20.77 15.49 -3.02 -0.05 -20.81 16 6 C 0.13 1.41 2.77 44.47 0.12 1.53 16 7 H 0.18 0.24 4.95 -2.39 -0.01 0.23 16 8 C -0.05 -0.41 5.55 29.94 0.17 -0.24 16 9 C -0.03 -0.62 6.38 40.36 0.26 -0.36 16 10 C -0.01 -0.18 11.83 83.09 0.98 0.80 16 11 N -0.51 -13.18 11.27 -200.81 -2.26 -15.44 16 12 C 0.23 5.85 12.53 180.17 2.26 8.11 16 13 N -0.46 -11.12 2.85 -477.62 -1.36 -12.49 16 14 C 0.73 18.09 7.86 179.10 1.41 19.50 16 15 O -0.57 -17.70 17.75 -3.68 -0.07 -17.76 16 16 N -0.69 -11.07 4.92 -462.28 -2.28 -13.34 16 17 C 0.14 4.74 3.44 46.38 0.16 4.90 16 18 H 0.07 2.78 7.03 -2.39 -0.02 2.76 16 19 C -0.13 -4.49 6.11 31.79 0.19 -4.30 16 20 C 0.19 9.01 5.37 86.73 0.47 9.48 16 21 N -0.63 -31.53 3.39 -692.00 -2.35 -33.88 16 22 C -0.25 -13.72 10.28 84.03 0.86 -12.86 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 24 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 25 N -0.95 -56.71 10.31 21.65 0.22 -56.49 16 26 Si 0.98 45.56 29.55 68.60 2.03 47.58 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 30 C 0.13 5.17 6.78 86.85 0.59 5.76 16 31 H 0.05 0.67 5.86 -2.39 -0.01 0.66 16 32 H 0.07 0.27 6.26 -2.39 -0.01 0.26 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.12 0.29 5.90 -2.39 -0.01 0.27 16 35 H 0.08 1.27 6.31 -2.39 -0.02 1.25 16 36 H 0.14 0.61 7.16 -2.39 -0.02 0.59 16 37 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 39 H 0.23 4.71 8.06 -2.91 -0.02 4.68 16 40 H 0.44 4.87 8.90 -92.71 -0.83 4.04 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.10 2.75 5.21 -2.39 -0.01 2.74 16 43 H 0.00 0.16 7.38 -2.39 -0.02 0.14 16 44 H 0.02 0.95 7.51 -2.39 -0.02 0.93 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 46 H 0.05 1.71 6.32 -2.39 -0.02 1.69 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -89.22 368.37 1.72 -87.50 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.21 Total: 8.12 kcal Atomic # 6 Polarization: 32.08 SS G_CDS: 9.62 Total: 41.69 kcal Atomic # 7 Polarization: -136.30 SS G_CDS: -10.02 Total: -146.32 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.11 Total: -38.58 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -89.22 1.72 -87.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033904770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.040 kcal (2) G-P(sol) polarization free energy of solvation -89.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds