Wall clock time and date at job start Wed Apr 1 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46489 * 109.47335 * 2 1 4 4 C 1.34774 * 120.00403 * 266.04775 * 3 2 1 5 5 O 1.21282 * 120.00693 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99841 * 0.02562 * 4 3 2 7 7 H 1.09009 * 109.09503 * 39.10988 * 6 4 3 8 8 C 1.53322 * 109.10779 * 280.00001 * 6 4 3 9 9 C 1.50673 * 107.88235 * 282.26897 * 8 6 4 10 10 C 1.33057 * 130.80924 * 152.74939 * 9 8 6 11 11 N 1.34736 * 108.03918 * 179.68155 * 10 9 8 12 12 C 1.30824 * 109.53902 * 0.04073 * 11 10 9 13 13 N 1.35043 * 108.33286 * 0.22618 * 12 11 10 14 14 C 1.34584 * 131.28998 * 179.09575 * 13 12 11 15 15 O 1.21495 * 120.69722 * 9.55183 * 14 13 12 16 16 N 1.34822 * 118.59754 * 189.57152 * 14 13 12 17 17 C 1.46500 * 120.00160 * 86.05296 * 3 2 1 18 18 H 1.09006 * 110.64181 * 236.80770 * 17 3 2 19 19 C 1.55157 * 110.72591 * 113.65837 * 17 3 2 20 20 C 1.54901 * 101.58332 * 277.14123 * 19 17 3 21 21 N 1.47422 * 104.83643 * 322.98847 * 20 19 17 22 22 C 1.36933 * 125.65272 * 204.09550 * 21 20 19 23 23 H 1.07998 * 120.00166 * 180.02562 * 22 21 20 24 24 C 1.38807 * 119.99499 * 0.02562 * 22 21 20 25 25 N 1.31614 * 120.00577 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99742 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47299 * 90.00105 * 26 24 22 28 28 H 1.48499 * 109.47222 * 210.00390 * 26 24 22 29 29 H 1.48503 * 109.46931 * 330.00171 * 26 24 22 30 30 C 1.47028 * 108.69873 * 24.12684 * 21 20 19 31 31 H 1.08995 * 109.46938 * 185.61939 * 1 2 3 32 32 H 1.08998 * 109.46841 * 305.62051 * 1 2 3 33 33 H 1.08998 * 109.47008 * 65.61702 * 1 2 3 34 34 H 1.09004 * 109.46880 * 239.99783 * 2 1 3 35 35 H 1.09002 * 109.47071 * 120.01006 * 2 1 3 36 36 H 1.08997 * 109.78075 * 41.86060 * 8 6 4 37 37 H 1.08998 * 109.78132 * 162.67167 * 8 6 4 38 38 H 1.08000 * 125.97888 * 359.70209 * 10 9 8 39 39 H 1.07998 * 125.83187 * 180.24842 * 12 11 10 40 40 H 0.97004 * 118.55856 * 191.82513 * 16 14 13 41 41 H 1.09000 * 111.00257 * 159.06245 * 19 17 3 42 42 H 1.09002 * 110.99866 * 35.21934 * 19 17 3 43 43 H 1.09006 * 110.36391 * 81.82442 * 20 19 17 44 44 H 1.09000 * 110.36699 * 204.15039 * 20 19 17 45 45 H 0.97004 * 120.00477 * 179.97438 * 25 24 22 46 46 H 1.08997 * 109.88373 * 239.52425 * 30 21 20 47 47 H 1.09007 * 110.00839 * 118.43171 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3189 1.9897 -1.1644 5 8 2.7237 3.1330 -1.1644 6 6 2.1520 1.2495 -2.4664 7 1 1.2445 0.6473 -2.4205 8 6 3.3573 0.3255 -2.6766 9 6 4.5121 1.1712 -3.1473 10 6 5.8252 0.9982 -3.0201 11 7 6.4426 2.0342 -3.6210 12 6 5.5474 2.8483 -4.1184 13 7 4.3221 2.3524 -3.8419 14 6 3.0913 2.8204 -4.1199 15 8 2.9417 3.7676 -4.8660 16 7 2.0278 2.2161 -3.5528 17 6 2.1803 2.1008 1.2657 18 1 1.5992 3.0231 1.2604 19 6 3.6781 2.3973 1.5411 20 6 4.1504 1.0601 2.1643 21 7 3.0137 0.6037 2.9846 22 6 3.0933 -0.2417 4.0589 23 1 2.1982 -0.5176 4.5964 24 6 4.3246 -0.7440 4.4569 25 7 5.4156 -0.4074 3.8022 26 14 4.4332 -1.8979 5.9220 27 1 4.2895 -3.3013 5.4585 28 1 5.7493 -1.7290 6.5886 29 1 3.3469 -1.5805 6.8836 30 6 1.7803 1.2059 2.4577 31 1 -0.3633 -1.0227 0.1006 32 1 -0.3633 0.5985 0.8354 33 1 -0.3633 0.4242 -0.9360 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5140 0.8899 36 1 3.6165 -0.1622 -1.7369 37 1 3.1193 -0.4258 -3.4295 38 1 6.3111 0.1719 -2.5226 39 1 5.7532 3.7607 -4.6582 40 1 1.1413 2.4333 -3.8812 41 1 3.7901 3.2191 2.2483 42 1 4.2118 2.6064 0.6140 43 1 4.3695 0.3335 1.3819 44 1 5.0285 1.2222 2.7895 45 1 6.2761 -0.7581 4.0806 46 1 1.3028 1.8088 3.2301 47 1 1.0977 0.4251 2.1223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033904779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:54 Heat of formation + Delta-G solvation = 59.400167 kcal Electronic energy + Delta-G solvation = -32714.929253 eV Core-core repulsion = 28515.117914 eV Total energy + Delta-G solvation = -4199.811339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.21225 -40.54525 -39.40820 -37.72412 -36.21615 -35.21888 -33.22616 -32.49802 -32.03388 -30.66497 -29.36605 -28.66823 -27.44979 -25.08399 -24.59284 -24.19334 -23.12083 -21.62219 -21.40201 -20.22408 -19.50062 -18.80941 -18.05935 -17.65750 -17.07177 -16.93564 -16.62292 -16.19928 -15.76285 -15.05450 -14.96255 -14.71813 -14.36108 -14.25397 -13.81861 -13.76456 -13.71250 -13.29011 -13.18333 -12.96178 -12.74462 -12.35600 -12.27915 -12.10639 -11.84000 -11.63769 -11.12784 -11.06542 -11.04083 -10.97176 -10.79924 -10.43062 -10.33120 -10.30330 -10.23108 -10.14121 -10.02699 -9.67938 -9.28478 -8.73911 -8.73098 -8.45646 -6.93627 -5.72917 -3.16427 1.02351 1.98796 2.52899 2.65993 2.83957 3.05136 3.17536 3.33696 3.39514 3.41776 4.09550 4.15519 4.24568 4.40923 4.48993 4.61907 4.73563 4.87559 5.06008 5.13446 5.20463 5.28390 5.29521 5.35842 5.38841 5.47308 5.62181 5.67707 5.70251 5.79093 5.85934 6.08867 6.12810 6.25823 6.26479 6.33246 6.45238 6.49182 6.59392 6.66368 6.89349 6.92210 7.43974 7.46237 7.54395 7.58850 7.79572 7.81123 8.15895 8.28135 9.12969 9.73572 10.37466 11.30036 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.003542 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.456079 B = 7903.912582 C = 8803.122151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 N -0.583 5.583 4 C 0.495 3.505 5 O -0.525 6.525 6 C 0.119 3.881 7 H 0.128 0.872 8 C -0.055 4.055 9 C -0.034 4.034 10 C 0.017 3.983 11 N -0.480 5.480 12 C 0.253 3.747 13 N -0.454 5.454 14 C 0.738 3.262 15 O -0.534 6.534 16 N -0.704 5.704 17 C 0.135 3.865 18 H 0.075 0.925 19 C -0.151 4.151 20 C 0.158 3.842 21 N -0.601 5.601 22 C -0.228 4.228 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.918 5.918 26 Si 0.913 3.087 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.124 3.876 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.183 0.817 39 H 0.218 0.782 40 H 0.423 0.577 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.010 0.990 44 H 0.105 0.895 45 H 0.253 0.747 46 H 0.032 0.968 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -0.945 -14.802 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.037 4.037 3 N -0.316 5.316 4 C 0.280 3.720 5 O -0.401 6.401 6 C 0.009 3.991 7 H 0.145 0.855 8 C -0.094 4.094 9 C -0.140 4.140 10 C -0.125 4.125 11 N -0.197 5.197 12 C -0.030 4.030 13 N -0.160 5.160 14 C 0.439 3.561 15 O -0.406 6.406 16 N -0.360 5.360 17 C 0.032 3.968 18 H 0.093 0.907 19 C -0.190 4.190 20 C 0.033 3.967 21 N -0.328 5.328 22 C -0.356 4.356 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.566 5.566 26 Si 0.743 3.257 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 C -0.002 4.002 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.200 0.800 39 H 0.235 0.765 40 H 0.262 0.738 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.028 0.972 44 H 0.122 0.878 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.613 0.198 -15.077 16.891 hybrid contribution -1.227 -0.628 0.835 1.612 sum -8.839 -0.430 -14.241 16.767 Atomic orbital electron populations 1.22268 0.95804 1.02659 1.02118 1.21868 0.94359 0.82736 1.04772 1.47953 1.63894 1.14128 1.05626 1.20713 0.78695 0.87372 0.85243 1.90733 1.44851 1.17750 1.86792 1.21162 1.02120 0.90077 0.85698 0.85465 1.20605 0.88673 0.95607 1.04499 1.21257 0.97551 0.90704 1.04531 1.21942 0.89436 0.99103 1.02009 1.70789 1.31431 1.03932 1.13588 1.25321 0.76987 1.00505 1.00154 1.43761 1.07316 1.20372 1.44508 1.15535 0.79745 0.81177 0.79619 1.91011 1.84288 1.26132 1.39176 1.44689 1.08804 1.45775 1.36736 1.22055 0.98419 0.94262 0.82015 0.90691 1.23324 0.94151 1.01027 1.00514 1.21884 0.93163 0.88577 0.93072 1.44525 1.00825 1.54201 1.33231 1.19028 0.93474 1.19061 1.04065 0.90496 1.24779 0.95418 1.00625 0.99406 1.69810 0.97832 1.47597 1.41339 0.86108 0.77066 0.80472 0.82012 1.21602 1.21642 1.20724 1.21710 0.91502 0.94743 0.92289 0.91220 0.91552 0.93156 0.90829 0.87284 0.86202 0.87631 0.80035 0.76536 0.73807 0.91501 0.91627 0.97169 0.87750 0.93623 0.94985 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.70 37.16 0.36 -1.13 16 2 C 0.09 0.94 4.87 -4.05 -0.02 0.92 16 3 N -0.58 -8.04 2.62 -164.03 -0.43 -8.47 16 4 C 0.50 6.88 6.18 -10.99 -0.07 6.81 16 5 O -0.53 -9.57 14.89 5.56 0.08 -9.49 16 6 C 0.12 1.13 2.74 -69.22 -0.19 0.94 16 7 H 0.13 0.73 6.34 -51.92 -0.33 0.40 16 8 C -0.05 -0.49 5.36 -27.73 -0.15 -0.64 16 9 C -0.03 -0.42 6.39 -81.46 -0.52 -0.94 16 10 C 0.02 0.22 11.83 -18.08 -0.21 0.01 16 11 N -0.48 -7.00 11.27 -14.83 -0.17 -7.17 16 12 C 0.25 3.40 12.54 -90.10 -1.13 2.27 16 13 N -0.45 -6.21 2.85 -64.88 -0.19 -6.39 16 14 C 0.74 10.18 7.91 -87.05 -0.69 9.49 16 15 O -0.53 -8.61 17.75 5.37 0.10 -8.52 16 16 N -0.70 -7.36 4.84 -60.06 -0.29 -7.65 16 17 C 0.14 2.29 3.27 -66.09 -0.22 2.07 16 18 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 19 C -0.15 -2.98 6.48 -24.59 -0.16 -3.14 16 20 C 0.16 3.63 5.87 -2.53 -0.01 3.62 16 21 N -0.60 -13.96 3.26 -170.07 -0.56 -14.51 16 22 C -0.23 -5.88 10.27 -15.06 -0.15 -6.03 16 23 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -25.51 10.09 55.49 0.56 -24.95 16 26 Si 0.91 20.96 29.55 -169.99 -5.02 15.94 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 C 0.12 2.28 5.99 -3.06 -0.02 2.26 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.68 7.08 -51.93 -0.37 0.31 16 33 H 0.05 0.35 7.46 -51.93 -0.39 -0.04 16 34 H 0.07 0.60 4.96 -51.93 -0.26 0.34 16 35 H 0.11 1.58 6.15 -51.93 -0.32 1.27 16 36 H 0.12 1.09 6.82 -51.93 -0.35 0.73 16 37 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.22 2.28 8.06 -52.49 -0.42 1.85 16 40 H 0.42 3.38 8.90 -40.82 -0.36 3.02 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.35 6.80 -51.93 -0.35 0.99 16 43 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.10 2.81 5.87 -51.93 -0.30 2.50 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.04 0.67 4.28 -51.93 -0.22 0.44 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -34.59 369.10 -9.82 -44.40 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.19 Total: 4.98 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: -3.28 Total: 16.26 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.07 Total: -69.14 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.00 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.59 -9.82 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033904779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.805 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds