Wall clock time and date at job start Wed Apr 1 2020 04:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46489 * 109.47335 * 2 1 4 4 C 1.34774 * 120.00403 * 266.04775 * 3 2 1 5 5 O 1.21282 * 120.00693 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99841 * 0.02562 * 4 3 2 7 7 H 1.09009 * 109.09503 * 39.10988 * 6 4 3 8 8 C 1.53322 * 109.10779 * 280.00001 * 6 4 3 9 9 C 1.50673 * 107.88235 * 282.26897 * 8 6 4 10 10 C 1.33057 * 130.80924 * 152.74939 * 9 8 6 11 11 N 1.34736 * 108.03918 * 179.68155 * 10 9 8 12 12 C 1.30824 * 109.53902 * 0.04073 * 11 10 9 13 13 N 1.35043 * 108.33286 * 0.22618 * 12 11 10 14 14 C 1.34584 * 131.28998 * 179.09575 * 13 12 11 15 15 O 1.21495 * 120.69722 * 9.55183 * 14 13 12 16 16 N 1.34822 * 118.59754 * 189.57152 * 14 13 12 17 17 C 1.46500 * 120.00160 * 86.05296 * 3 2 1 18 18 H 1.09006 * 110.64181 * 236.80770 * 17 3 2 19 19 C 1.55157 * 110.72591 * 113.65837 * 17 3 2 20 20 C 1.54901 * 101.58332 * 277.14123 * 19 17 3 21 21 N 1.47422 * 104.83643 * 322.98847 * 20 19 17 22 22 C 1.36933 * 125.65272 * 204.09550 * 21 20 19 23 23 H 1.07998 * 120.00166 * 180.02562 * 22 21 20 24 24 C 1.38807 * 119.99499 * 0.02562 * 22 21 20 25 25 N 1.31614 * 120.00577 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99742 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47299 * 90.00105 * 26 24 22 28 28 H 1.48499 * 109.47222 * 210.00390 * 26 24 22 29 29 H 1.48503 * 109.46931 * 330.00171 * 26 24 22 30 30 C 1.47028 * 108.69873 * 24.12684 * 21 20 19 31 31 H 1.08995 * 109.46938 * 185.61939 * 1 2 3 32 32 H 1.08998 * 109.46841 * 305.62051 * 1 2 3 33 33 H 1.08998 * 109.47008 * 65.61702 * 1 2 3 34 34 H 1.09004 * 109.46880 * 239.99783 * 2 1 3 35 35 H 1.09002 * 109.47071 * 120.01006 * 2 1 3 36 36 H 1.08997 * 109.78075 * 41.86060 * 8 6 4 37 37 H 1.08998 * 109.78132 * 162.67167 * 8 6 4 38 38 H 1.08000 * 125.97888 * 359.70209 * 10 9 8 39 39 H 1.07998 * 125.83187 * 180.24842 * 12 11 10 40 40 H 0.97004 * 118.55856 * 191.82513 * 16 14 13 41 41 H 1.09000 * 111.00257 * 159.06245 * 19 17 3 42 42 H 1.09002 * 110.99866 * 35.21934 * 19 17 3 43 43 H 1.09006 * 110.36391 * 81.82442 * 20 19 17 44 44 H 1.09000 * 110.36699 * 204.15039 * 20 19 17 45 45 H 0.97004 * 120.00477 * 179.97438 * 25 24 22 46 46 H 1.08997 * 109.88373 * 239.52425 * 30 21 20 47 47 H 1.09007 * 110.00839 * 118.43171 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3189 1.9897 -1.1644 5 8 2.7237 3.1330 -1.1644 6 6 2.1520 1.2495 -2.4664 7 1 1.2445 0.6473 -2.4205 8 6 3.3573 0.3255 -2.6766 9 6 4.5121 1.1712 -3.1473 10 6 5.8252 0.9982 -3.0201 11 7 6.4426 2.0342 -3.6210 12 6 5.5474 2.8483 -4.1184 13 7 4.3221 2.3524 -3.8419 14 6 3.0913 2.8204 -4.1199 15 8 2.9417 3.7676 -4.8660 16 7 2.0278 2.2161 -3.5528 17 6 2.1803 2.1008 1.2657 18 1 1.5992 3.0231 1.2604 19 6 3.6781 2.3973 1.5411 20 6 4.1504 1.0601 2.1643 21 7 3.0137 0.6037 2.9846 22 6 3.0933 -0.2417 4.0589 23 1 2.1982 -0.5176 4.5964 24 6 4.3246 -0.7440 4.4569 25 7 5.4156 -0.4074 3.8022 26 14 4.4332 -1.8979 5.9220 27 1 4.2895 -3.3013 5.4585 28 1 5.7493 -1.7290 6.5886 29 1 3.3469 -1.5805 6.8836 30 6 1.7803 1.2059 2.4577 31 1 -0.3633 -1.0227 0.1006 32 1 -0.3633 0.5985 0.8354 33 1 -0.3633 0.4242 -0.9360 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5140 0.8899 36 1 3.6165 -0.1622 -1.7369 37 1 3.1193 -0.4258 -3.4295 38 1 6.3111 0.1719 -2.5226 39 1 5.7532 3.7607 -4.6582 40 1 1.1413 2.4333 -3.8812 41 1 3.7901 3.2191 2.2483 42 1 4.2118 2.6064 0.6140 43 1 4.3695 0.3335 1.3819 44 1 5.0285 1.2222 2.7895 45 1 6.2761 -0.7581 4.0806 46 1 1.3028 1.8088 3.2301 47 1 1.0977 0.4251 2.1223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033904779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:51 Heat of formation + Delta-G solvation = 36.338815 kcal Electronic energy + Delta-G solvation = -32715.929268 eV Core-core repulsion = 28515.117914 eV Total energy + Delta-G solvation = -4200.811354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -44.18959 -41.66495 -40.48457 -39.11617 -37.26112 -36.54843 -34.38044 -34.06600 -32.96031 -31.95332 -30.58770 -30.02184 -28.93115 -26.49357 -25.86896 -25.21061 -24.09053 -22.69339 -22.58194 -21.95041 -20.61389 -19.90185 -19.07774 -18.89922 -18.61591 -17.98572 -17.79027 -17.26204 -16.91703 -16.62377 -16.12299 -15.77440 -15.67742 -15.47648 -15.12106 -14.93234 -14.68749 -14.62426 -14.20998 -13.94293 -13.82186 -13.61123 -13.44319 -13.41138 -13.27010 -12.88579 -12.79345 -12.64629 -12.37951 -12.08300 -12.01373 -11.95269 -11.88915 -11.67404 -11.56211 -11.43383 -11.35841 -11.34152 -10.70149 -10.34119 -9.69618 -9.64597 -8.85384 -7.73014 -5.17410 0.02511 1.05291 1.47672 1.51149 1.52737 1.60825 1.66164 1.83985 2.05799 2.21671 2.52887 3.21318 3.34861 3.38740 3.39490 3.61647 3.69140 3.73686 3.83055 3.97749 4.04909 4.08475 4.22573 4.24777 4.40878 4.45191 4.56741 4.60326 4.67446 4.69931 4.79410 4.88443 4.97430 5.00138 5.04293 5.18742 5.27403 5.45363 5.48015 5.51978 5.56175 5.60527 5.63698 5.82171 5.93765 6.31536 6.40013 6.62139 6.83425 7.07674 7.13303 7.80770 8.44579 9.28662 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.003542 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.456079 B = 7903.912582 C = 8803.122151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.081 3.919 3 N -0.582 5.582 4 C 0.490 3.510 5 O -0.574 6.574 6 C 0.127 3.873 7 H 0.182 0.818 8 C -0.055 4.055 9 C -0.031 4.031 10 C -0.010 4.010 11 N -0.505 5.505 12 C 0.237 3.763 13 N -0.462 5.462 14 C 0.732 3.268 15 O -0.566 6.566 16 N -0.689 5.689 17 C 0.149 3.851 18 H 0.081 0.919 19 C -0.139 4.139 20 C 0.172 3.828 21 N -0.616 5.616 22 C -0.232 4.232 23 H 0.086 0.914 24 C -0.062 4.062 25 N -0.948 5.948 26 Si 0.975 3.025 27 H -0.284 1.284 28 H -0.302 1.302 29 H -0.271 1.271 30 C 0.125 3.875 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.152 0.848 38 H 0.195 0.805 39 H 0.235 0.765 40 H 0.437 0.563 41 H 0.057 0.943 42 H 0.055 0.945 43 H -0.004 1.004 44 H 0.063 0.937 45 H 0.245 0.755 46 H 0.032 0.968 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 -2.797 -15.723 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.040 4.040 3 N -0.314 5.314 4 C 0.277 3.723 5 O -0.453 6.453 6 C 0.019 3.981 7 H 0.199 0.801 8 C -0.093 4.093 9 C -0.138 4.138 10 C -0.151 4.151 11 N -0.223 5.223 12 C -0.045 4.045 13 N -0.167 5.167 14 C 0.433 3.567 15 O -0.440 6.440 16 N -0.345 5.345 17 C 0.045 3.955 18 H 0.099 0.901 19 C -0.179 4.179 20 C 0.047 3.953 21 N -0.343 5.343 22 C -0.361 4.361 23 H 0.104 0.896 24 C -0.255 4.255 25 N -0.598 5.598 26 Si 0.804 3.196 27 H -0.210 1.210 28 H -0.229 1.229 29 H -0.196 1.196 30 C 0.000 4.000 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.170 0.830 38 H 0.212 0.788 39 H 0.251 0.749 40 H 0.278 0.722 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.014 0.986 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.720 -1.693 -15.994 19.328 hybrid contribution -0.285 -0.027 1.151 1.186 sum -11.005 -1.720 -14.843 18.557 Atomic orbital electron populations 1.22235 0.93413 1.03762 1.02926 1.22072 0.96232 0.80758 1.04966 1.47993 1.63780 1.15086 1.04505 1.21549 0.77266 0.86992 0.86472 1.90728 1.46853 1.20168 1.87575 1.21395 1.04762 0.89487 0.82503 0.80072 1.20883 0.86834 0.95674 1.05925 1.21822 0.98397 0.90363 1.03219 1.22283 0.90284 0.99566 1.02923 1.70744 1.32431 1.04768 1.14325 1.25737 0.77186 1.01110 1.00463 1.43873 1.07361 1.20803 1.44648 1.15770 0.80274 0.81076 0.79561 1.90984 1.84761 1.27523 1.40747 1.44648 1.08586 1.45201 1.36048 1.21731 0.95758 0.94629 0.83391 0.90087 1.23094 0.96535 0.98826 0.99421 1.21483 0.92127 0.89704 0.91956 1.44684 1.02507 1.54103 1.32988 1.19413 0.93670 1.18593 1.04408 0.89603 1.25536 0.95305 1.02603 1.02017 1.70067 0.97935 1.48940 1.42849 0.85131 0.76487 0.78763 0.79238 1.21045 1.22882 1.19559 1.21842 0.90038 0.95378 0.92714 0.89434 0.93260 0.90420 0.87101 0.90781 0.85942 0.83046 0.78839 0.74915 0.72216 0.92412 0.92600 0.98621 0.91934 0.94557 0.94997 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.70 71.98 0.70 -1.38 16 2 C 0.08 1.49 4.87 86.38 0.42 1.91 16 3 N -0.58 -14.59 2.62 -791.25 -2.07 -16.66 16 4 C 0.49 12.37 6.18 87.66 0.54 12.91 16 5 O -0.57 -20.34 14.89 -3.04 -0.05 -20.39 16 6 C 0.13 1.85 2.74 44.46 0.12 1.97 16 7 H 0.18 0.77 6.34 -2.38 -0.02 0.76 16 8 C -0.05 -0.76 5.36 29.95 0.16 -0.60 16 9 C -0.03 -0.73 6.39 40.36 0.26 -0.48 16 10 C -0.01 -0.25 11.83 83.09 0.98 0.73 16 11 N -0.50 -15.03 11.27 -200.82 -2.26 -17.30 16 12 C 0.24 6.48 12.54 180.17 2.26 8.74 16 13 N -0.46 -12.24 2.85 -477.58 -1.36 -13.60 16 14 C 0.73 19.15 7.91 179.10 1.42 20.57 16 15 O -0.57 -17.94 17.75 -3.70 -0.07 -18.01 16 16 N -0.69 -12.16 4.84 -462.22 -2.24 -14.40 16 17 C 0.15 4.88 3.27 46.18 0.15 5.03 16 18 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 19 C -0.14 -5.61 6.48 31.98 0.21 -5.40 16 20 C 0.17 8.18 5.87 86.85 0.51 8.69 16 21 N -0.62 -28.68 3.26 -691.99 -2.26 -30.93 16 22 C -0.23 -11.90 10.27 84.03 0.86 -11.04 16 23 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 25 N -0.95 -54.33 10.09 21.65 0.22 -54.11 16 26 Si 0.97 43.26 29.55 68.60 2.03 45.29 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 30 C 0.13 4.47 5.99 86.73 0.52 4.98 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.81 7.08 -2.39 -0.02 0.79 16 33 H 0.08 0.59 7.46 -2.39 -0.02 0.57 16 34 H 0.11 1.19 4.96 -2.38 -0.01 1.18 16 35 H 0.07 1.96 6.15 -2.39 -0.01 1.95 16 36 H 0.12 1.75 6.82 -2.39 -0.02 1.73 16 37 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.19 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.23 5.08 8.06 -2.91 -0.02 5.06 16 40 H 0.44 5.34 8.90 -92.71 -0.83 4.52 16 41 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.36 6.80 -2.39 -0.02 2.34 16 43 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 44 H 0.06 3.53 5.87 -2.39 -0.01 3.52 16 45 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 2.07 4.28 -2.38 -0.01 2.06 16 Total: -1.00 -79.91 369.10 1.72 -78.19 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.21 Total: 18.11 kcal Atomic # 6 Polarization: 34.23 SS G_CDS: 9.57 Total: 43.81 kcal Atomic # 7 Polarization: -137.03 SS G_CDS: -9.98 Total: -147.00 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.11 Total: -38.39 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -79.91 1.72 -78.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033904779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.529 kcal (2) G-P(sol) polarization free energy of solvation -79.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds