Wall clock time and date at job start Wed Apr 1 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47014 * 111.00004 * 2 1 4 4 C 1.53096 * 109.25748 * 177.61106 * 3 2 1 5 5 O 1.43017 * 109.26122 * 56.84826 * 4 3 2 6 6 C 1.43019 * 113.73709 * 301.33187 * 5 4 3 7 7 H 1.08994 * 109.50634 * 298.69030 * 6 5 4 8 8 C 1.50703 * 109.50639 * 178.60200 * 6 5 4 9 9 O 1.21284 * 119.99888 * 355.00012 * 8 6 5 10 10 N 1.34779 * 119.99822 * 175.00270 * 8 6 5 11 11 C 1.46503 * 119.99574 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.46841 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.49721 * 55.06523 * 12 11 10 14 14 C 1.53189 * 109.49746 * 294.99801 * 12 11 10 15 15 N 1.46929 * 108.77489 * 185.41033 * 14 12 11 16 16 C 1.36936 * 120.63288 * 233.58570 * 15 14 12 17 17 H 1.08002 * 120.00044 * 28.84682 * 16 15 14 18 18 C 1.38807 * 119.99977 * 208.84548 * 16 15 14 19 19 N 1.31625 * 120.00011 * 199.07013 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 19.06613 * 18 16 15 21 21 H 1.48498 * 109.47249 * 269.99881 * 20 18 16 22 22 H 1.48505 * 109.47283 * 30.00217 * 20 18 16 23 23 H 1.48503 * 109.47069 * 149.99805 * 20 18 16 24 24 C 1.46927 * 118.73589 * 53.86445 * 15 14 12 25 25 C 1.53628 * 108.54405 * 306.09217 * 24 15 14 26 26 C 1.53038 * 109.23939 * 54.85695 * 25 24 15 27 27 F 1.39904 * 109.46106 * 178.49587 * 26 25 24 28 28 F 1.39902 * 109.45376 * 58.52533 * 26 25 24 29 29 C 1.47019 * 110.99676 * 236.36604 * 2 1 3 30 30 H 1.09005 * 109.47078 * 56.04135 * 1 2 3 31 31 H 1.08999 * 109.47611 * 176.04762 * 1 2 3 32 32 H 1.09000 * 109.46745 * 296.04838 * 1 2 3 33 33 H 1.08997 * 109.51012 * 57.67823 * 3 2 1 34 34 H 1.09000 * 109.50648 * 297.54449 * 3 2 1 35 35 H 1.08999 * 109.50996 * 296.91700 * 4 3 2 36 36 H 1.08998 * 109.54418 * 176.80533 * 4 3 2 37 37 H 0.96993 * 119.99797 * 0.02562 * 10 8 6 38 38 H 1.09002 * 109.47199 * 59.99686 * 11 10 8 39 39 H 1.08994 * 109.47124 * 299.99515 * 11 10 8 40 40 H 1.09006 * 109.58332 * 65.62711 * 14 12 11 41 41 H 1.08994 * 109.59218 * 305.20289 * 14 12 11 42 42 H 0.96999 * 119.99812 * 355.20191 * 19 18 16 43 43 H 1.09000 * 109.58762 * 65.92090 * 24 15 14 44 44 H 1.08998 * 109.58553 * 186.35035 * 24 15 14 45 45 H 1.08994 * 109.63469 * 294.86828 * 25 24 15 46 46 H 1.08998 * 109.46023 * 174.74151 * 25 24 15 47 47 H 1.09000 * 109.50399 * 62.45921 * 29 2 1 48 48 H 1.08996 * 109.50937 * 302.33140 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 0.0602 5 8 4.0175 0.5574 -1.0404 6 6 3.5249 -0.7849 -1.0710 7 1 3.8391 -1.3086 -0.1683 8 6 4.0740 -1.4950 -2.2816 9 8 4.7401 -0.8858 -3.0917 10 7 3.8248 -2.8069 -2.4641 11 6 4.3591 -3.4972 -3.6406 12 6 3.9340 -4.9666 -3.6065 13 1 2.8490 -5.0295 -3.5225 14 6 4.5811 -5.6583 -2.4026 15 7 4.2691 -7.0930 -2.4575 16 6 3.6980 -7.7244 -1.3850 17 1 3.0625 -7.1720 -0.7087 18 6 3.9359 -9.0745 -1.1670 19 7 3.1268 -9.7691 -0.3954 20 14 5.4042 -9.9056 -1.9688 21 1 5.0054 -10.4443 -3.2939 22 1 6.4976 -8.9163 -2.1452 23 1 5.8769 -11.0168 -1.1045 24 6 4.5873 -7.8387 -3.6829 25 6 3.9350 -7.1214 -4.8746 26 6 4.3885 -5.6598 -4.8931 27 9 3.8242 -5.0107 -5.9965 28 9 5.7835 -5.6059 -4.9837 29 6 1.9958 -0.7602 -1.1428 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 -0.3633 0.4513 0.9233 33 1 1.6135 1.9092 0.8682 34 1 1.6827 1.8826 -0.9110 35 1 3.8386 0.8643 0.9963 36 1 3.9228 2.3396 0.0033 37 1 3.2918 -3.2939 -1.8164 38 1 5.4473 -3.4339 -3.6360 39 1 3.9717 -3.0274 -4.5446 40 1 4.1847 -5.2332 -1.4804 41 1 5.6614 -5.5176 -2.4374 42 1 2.4055 -9.3240 0.0763 43 1 5.6681 -7.8722 -3.8201 44 1 4.1950 -8.8527 -3.6057 45 1 2.8501 -7.1645 -4.7789 46 1 4.2381 -7.6081 -5.8016 47 1 1.6827 -0.2842 -2.0720 48 1 1.6132 -1.7803 -1.1088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046926324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:17 Heat of formation + Delta-G solvation = -170.535786 kcal Electronic energy + Delta-G solvation = -32429.077502 eV Core-core repulsion = 27768.606205 eV Total energy + Delta-G solvation = -4660.471296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.04896 -48.00185 -41.52835 -39.99936 -39.10328 -36.88345 -36.41200 -34.61444 -33.29364 -32.26600 -32.03970 -29.85705 -27.70607 -26.66425 -25.83965 -25.14721 -23.85343 -23.27878 -22.03377 -21.48473 -21.26406 -19.56956 -18.81605 -18.42808 -18.06622 -17.44576 -17.33375 -17.13264 -16.85756 -16.41989 -16.41649 -16.20572 -16.01515 -15.74606 -15.59795 -15.23702 -15.00911 -14.94815 -14.81035 -14.43612 -14.31111 -14.20456 -13.79907 -13.69755 -13.64025 -13.34603 -13.23760 -13.09039 -12.96359 -12.84841 -12.51362 -12.46956 -12.30513 -11.87102 -11.82435 -11.65331 -11.53985 -11.17617 -10.94674 -10.82192 -10.65418 -10.30429 -9.54754 -9.18825 -8.48750 -5.56670 1.35747 1.42940 1.58558 1.60847 1.73942 2.52697 2.63083 2.66834 2.91952 3.01906 3.06534 3.20751 3.38192 3.41988 3.55988 3.63291 3.77359 3.85382 3.91844 3.93888 4.09791 4.17030 4.26607 4.33142 4.36993 4.43739 4.50268 4.56195 4.59109 4.60206 4.62872 4.72568 4.75611 4.76479 4.78019 4.87442 4.93027 4.98341 5.10951 5.19179 5.74484 5.79050 5.84518 5.92820 6.24489 6.34041 6.86796 7.01536 7.48259 8.02129 8.89552 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.003041 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.555967 B = 9204.190071 C =10460.793179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.547 5.547 3 C 0.015 3.985 4 C 0.056 3.944 5 O -0.387 6.387 6 C 0.082 3.918 7 H 0.110 0.890 8 C 0.522 3.478 9 O -0.565 6.565 10 N -0.708 5.708 11 C 0.135 3.865 12 C -0.142 4.142 13 H 0.117 0.883 14 C 0.153 3.847 15 N -0.616 5.616 16 C -0.328 4.328 17 H 0.049 0.951 18 C -0.064 4.064 19 N -0.956 5.956 20 Si 1.094 2.906 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.311 1.311 24 C 0.115 3.885 25 C -0.165 4.165 26 C 0.302 3.698 27 F -0.204 7.204 28 F -0.205 7.205 29 C 0.034 3.966 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.416 0.584 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.252 0.748 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.038 0.962 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 18.890 -1.997 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.113 4.113 4 C -0.020 4.020 5 O -0.306 6.306 6 C 0.021 3.979 7 H 0.127 0.873 8 C 0.308 3.692 9 O -0.442 6.442 10 N -0.362 5.362 11 C 0.011 3.989 12 C -0.163 4.163 13 H 0.135 0.865 14 C 0.027 3.973 15 N -0.340 5.340 16 C -0.458 4.458 17 H 0.066 0.934 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.921 3.079 21 H -0.193 1.193 22 H -0.195 1.195 23 H -0.239 1.239 24 C -0.010 4.010 25 C -0.205 4.205 26 C 0.265 3.735 27 F -0.185 7.185 28 F -0.186 7.186 29 C -0.095 4.095 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.254 0.746 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.056 0.944 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.464 17.762 -2.489 18.103 hybrid contribution -1.501 1.450 0.010 2.087 sum -3.965 19.212 -2.479 19.772 Atomic orbital electron populations 1.22471 0.85065 1.02994 1.01925 1.62256 1.09789 1.14099 1.41055 1.22908 0.96105 0.89526 1.02730 1.23011 0.92767 0.97067 0.89146 1.88084 1.70162 1.22277 1.50080 1.21920 0.93978 0.85492 0.96513 0.87253 1.20493 0.79837 0.82027 0.86869 1.90711 1.40226 1.66876 1.46426 1.45727 1.54903 1.09090 1.26447 1.21145 0.99294 0.89745 0.88722 1.22788 1.04343 0.94141 0.94991 0.86516 1.21046 0.97220 0.83487 0.95547 1.44471 1.72379 1.05450 1.11721 1.20137 1.24264 0.95323 1.06050 0.93365 1.27182 1.03378 0.95378 0.99994 1.71012 1.18118 1.37124 1.33530 0.83405 0.74450 0.74860 0.75158 1.19273 1.19498 1.23947 1.21586 0.97954 0.96354 0.85139 1.23048 1.03992 0.91719 1.01712 1.20952 0.74328 0.94377 0.83858 1.92988 1.84869 1.83669 1.56996 1.92969 1.31536 1.97386 1.96690 1.22641 0.92668 1.01291 0.92937 0.95256 0.90504 0.89476 0.86949 0.94374 0.91082 0.86119 0.74632 0.91536 0.90853 0.90255 0.94736 0.93862 0.93768 0.90784 0.88087 0.87493 0.94411 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.63 127.69 1.23 1.51 16 2 N -0.55 -8.62 4.99 -921.42 -4.59 -13.21 16 3 C 0.02 0.21 5.66 86.31 0.49 0.70 16 4 C 0.06 0.89 7.01 72.01 0.50 1.40 16 5 O -0.39 -9.64 10.01 -130.02 -1.30 -10.94 16 6 C 0.08 1.80 3.22 29.88 0.10 1.90 16 7 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 8 C 0.52 14.22 7.18 87.66 0.63 14.85 16 9 O -0.56 -20.61 16.51 15.92 0.26 -20.35 16 10 N -0.71 -16.51 5.30 -463.04 -2.45 -18.97 16 11 C 0.14 3.62 4.83 86.38 0.42 4.04 16 12 C -0.14 -3.96 2.03 -10.71 -0.02 -3.98 16 13 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 14 C 0.15 5.16 5.39 86.36 0.47 5.63 16 15 N -0.62 -25.77 2.75 -698.25 -1.92 -27.69 16 16 C -0.33 -16.70 9.90 84.03 0.83 -15.87 16 17 H 0.05 2.62 8.06 -2.91 -0.02 2.60 16 18 C -0.06 -3.46 5.25 84.86 0.45 -3.01 16 19 N -0.96 -56.97 13.70 21.65 0.30 -56.67 16 20 Si 1.09 49.72 24.68 68.60 1.69 51.41 16 21 H -0.27 -10.88 6.52 99.48 0.65 -10.23 16 22 H -0.27 -11.55 6.74 99.48 0.67 -10.88 16 23 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 24 C 0.11 4.35 4.01 86.51 0.35 4.70 16 25 C -0.17 -4.97 5.64 30.82 0.17 -4.80 16 26 C 0.30 8.97 1.63 30.62 0.05 9.02 16 27 F -0.20 -5.94 16.41 44.97 0.74 -5.20 16 28 F -0.20 -6.63 15.72 44.97 0.71 -5.92 16 29 C 0.03 0.60 4.89 86.31 0.42 1.02 16 30 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.42 7.85 7.58 -92.71 -0.70 7.15 16 38 H 0.07 1.97 7.97 -2.39 -0.02 1.95 16 39 H 0.07 2.03 7.63 -2.39 -0.02 2.01 16 40 H 0.08 2.53 7.13 -2.38 -0.02 2.51 16 41 H 0.03 1.21 7.92 -2.39 -0.02 1.19 16 42 H 0.25 15.02 8.73 -92.71 -0.81 14.21 16 43 H 0.04 1.66 6.87 -2.39 -0.02 1.64 16 44 H 0.07 3.03 4.47 -2.39 -0.01 3.02 16 45 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 46 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 47 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.11 1.60 7.99 -2.39 -0.02 1.58 16 Total: -1.00 -69.91 378.70 -0.35 -70.26 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.14 Total: 20.20 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.08 Total: 17.09 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -8.67 Total: -116.55 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.04 Total: -31.29 kcal Atomic # 9 Polarization: -12.57 SS G_CDS: 1.44 Total: -11.13 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 1.69 Total: 51.41 kcal Total: -69.91 -0.35 -70.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046926324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.277 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds