Wall clock time and date at job start Wed Apr 1 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47022 * 110.99751 * 2 1 4 4 C 1.53094 * 109.25810 * 182.39273 * 3 2 1 5 5 O 1.43018 * 109.25782 * 303.14871 * 4 3 2 6 6 C 1.43019 * 113.73720 * 58.67134 * 5 4 3 7 7 H 1.08997 * 109.53984 * 61.28713 * 6 5 4 8 8 C 1.50702 * 109.50362 * 181.39333 * 6 5 4 9 9 O 1.21278 * 120.00107 * 4.78052 * 8 6 5 10 10 N 1.34779 * 119.99696 * 184.78293 * 8 6 5 11 11 C 1.46497 * 119.99775 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47275 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.52362 * 54.91145 * 12 11 10 14 14 C 1.53172 * 109.47453 * 294.84525 * 12 11 10 15 15 N 1.46931 * 108.76363 * 185.40784 * 14 12 11 16 16 C 1.36940 * 120.62520 * 233.57913 * 15 14 12 17 17 H 1.08002 * 119.99459 * 27.70210 * 16 15 14 18 18 C 1.38803 * 120.00007 * 207.69728 * 16 15 14 19 19 N 1.31623 * 120.00169 * 17.36227 * 18 16 15 20 20 Si 1.86799 * 120.00091 * 197.35948 * 18 16 15 21 21 H 1.48504 * 109.47240 * 60.00303 * 20 18 16 22 22 H 1.48506 * 109.47323 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47209 * 300.00223 * 20 18 16 24 24 C 1.46917 * 118.74071 * 53.60676 * 15 14 12 25 25 C 1.53195 * 108.77632 * 306.38793 * 24 15 14 26 26 C 1.53035 * 109.50177 * 175.00018 * 12 11 10 27 27 F 1.39901 * 109.46276 * 61.29173 * 26 12 11 28 28 F 1.39905 * 109.45816 * 301.32137 * 26 12 11 29 29 C 1.47013 * 111.00114 * 123.63209 * 2 1 3 30 30 H 1.09002 * 109.47376 * 296.36292 * 1 2 3 31 31 H 1.08999 * 109.47262 * 56.36677 * 1 2 3 32 32 H 1.08997 * 109.46632 * 176.36923 * 1 2 3 33 33 H 1.09007 * 109.50087 * 302.32463 * 3 2 1 34 34 H 1.08994 * 109.50687 * 62.41005 * 3 2 1 35 35 H 1.08999 * 109.50637 * 63.08171 * 4 3 2 36 36 H 1.08999 * 109.50850 * 183.16756 * 4 3 2 37 37 H 0.96999 * 120.00220 * 0.02562 * 10 8 6 38 38 H 1.09000 * 109.47608 * 59.99849 * 11 10 8 39 39 H 1.09002 * 109.46950 * 299.99390 * 11 10 8 40 40 H 1.08995 * 109.59086 * 65.61596 * 14 12 11 41 41 H 1.09006 * 109.70511 * 305.25457 * 14 12 11 42 42 H 0.96997 * 119.99852 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.58578 * 186.60506 * 24 15 14 44 44 H 1.08999 * 109.59358 * 66.17905 * 24 15 14 45 45 H 1.08997 * 109.49831 * 294.68569 * 25 24 15 46 46 H 1.09002 * 109.49710 * 174.58669 * 25 24 15 47 47 H 1.08996 * 109.50718 * 57.67443 * 29 2 1 48 48 H 1.09000 * 109.50622 * 297.54420 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 -0.0603 5 8 4.0175 0.5576 1.0403 6 6 3.5250 -0.7848 1.0710 7 1 3.8386 -1.3088 0.1682 8 6 4.0743 -1.4947 2.2815 9 8 4.7437 -0.8864 3.0894 10 7 3.8216 -2.8056 2.4662 11 6 4.3550 -3.4957 3.6433 12 6 3.9258 -4.9639 3.6119 13 1 4.2330 -5.4131 2.6675 14 6 2.4029 -5.0537 3.7493 15 7 2.0199 -6.4688 3.8481 16 6 1.0828 -6.9986 3.0017 17 1 0.9426 -6.5749 2.0182 18 6 0.3133 -8.0801 3.4078 19 7 0.2262 -8.3830 4.6857 20 14 -0.5989 -9.1055 2.1406 21 1 0.3750 -9.6960 1.1876 22 1 -1.3427 -10.1928 2.8262 23 1 -1.5547 -8.2428 1.4007 24 6 2.6610 -7.3043 4.8725 25 6 4.1812 -7.1890 4.7224 26 6 4.5842 -5.7135 4.7723 27 9 4.1645 -5.1565 5.9851 28 9 5.9751 -5.6065 4.6669 29 6 1.9959 -0.7602 1.1427 30 1 -0.3634 0.4563 0.9208 31 1 -0.3634 0.5692 -0.8556 32 1 -0.3632 -1.0256 -0.0651 33 1 1.6133 1.9092 -0.8683 34 1 1.6820 1.8829 0.9105 35 1 3.8385 0.8645 -0.9964 36 1 3.9221 2.3401 -0.0038 37 1 3.2865 -3.2922 1.8198 38 1 3.9699 -3.0234 4.5470 39 1 5.4434 -3.4356 3.6374 40 1 1.9300 -4.6073 2.8747 41 1 2.0831 -4.5251 4.6474 42 1 -0.3112 -9.1390 4.9694 43 1 2.3584 -8.3430 4.7388 44 1 2.3645 -6.9599 5.8632 45 1 4.4860 -7.6174 3.7676 46 1 4.6689 -7.7271 5.5353 47 1 1.6134 -1.7803 1.1087 48 1 1.6828 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046926327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:32 Heat of formation + Delta-G solvation = -149.222537 kcal Electronic energy + Delta-G solvation = -32444.779914 eV Core-core repulsion = 27785.232829 eV Total energy + Delta-G solvation = -4659.547085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.54534 -46.49704 -40.51138 -38.92727 -37.36510 -35.99459 -34.98156 -32.87205 -31.96253 -30.71418 -30.22306 -29.03913 -26.20967 -25.27739 -24.64664 -24.40175 -22.50299 -21.55973 -21.05731 -20.44286 -19.57566 -17.84669 -17.07672 -16.91842 -16.79647 -16.32400 -16.10298 -15.82970 -15.48135 -15.31367 -15.14877 -15.02138 -14.83506 -14.53414 -14.09828 -13.86887 -13.64163 -13.36258 -13.24180 -13.12043 -12.84962 -12.80839 -12.66543 -12.28499 -12.23597 -12.06383 -11.75567 -11.70959 -11.61958 -11.55773 -11.26924 -11.08103 -10.84865 -10.66213 -10.58012 -10.10471 -10.02030 -9.97599 -9.86970 -9.62815 -9.07805 -8.81377 -8.64448 -6.94250 -5.97323 -3.42046 2.50676 2.67606 3.27729 3.34907 3.35258 3.41910 3.78947 4.18996 4.33667 4.43757 4.53615 4.56985 4.60897 4.66507 4.73073 4.84466 4.87360 4.95842 5.13985 5.17398 5.18891 5.22873 5.24416 5.38309 5.38796 5.42746 5.50464 5.56416 5.59504 5.61127 5.88258 5.96797 6.12414 6.23832 6.27730 6.33472 6.39601 6.48092 6.52381 6.64671 6.75605 7.07121 7.41474 7.43118 7.60998 8.15467 8.22890 8.98981 9.61638 10.16803 11.11754 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.003411 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.573624 B = 8206.915211 C =10562.122808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.013 3.987 4 C 0.063 3.937 5 O -0.356 6.356 6 C 0.079 3.921 7 H 0.094 0.906 8 C 0.521 3.479 9 O -0.518 6.518 10 N -0.719 5.719 11 C 0.127 3.873 12 C -0.155 4.155 13 H 0.103 0.897 14 C 0.153 3.847 15 N -0.590 5.590 16 C -0.264 4.264 17 H 0.069 0.931 18 C 0.008 3.992 19 N -0.899 5.899 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.170 3.830 25 C -0.179 4.179 26 C 0.300 3.700 27 F -0.199 7.199 28 F -0.213 7.213 29 C 0.027 3.973 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.404 0.596 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.258 0.742 43 H 0.101 0.899 44 H 0.032 0.968 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 13.324 -9.150 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.115 4.115 4 C -0.015 4.015 5 O -0.274 6.274 6 C 0.018 3.982 7 H 0.112 0.888 8 C 0.304 3.696 9 O -0.393 6.393 10 N -0.373 5.373 11 C 0.003 3.997 12 C -0.177 4.177 13 H 0.121 0.879 14 C 0.026 3.974 15 N -0.312 5.312 16 C -0.393 4.393 17 H 0.087 0.913 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.208 1.208 24 C 0.044 3.956 25 C -0.219 4.219 26 C 0.264 3.736 27 F -0.180 7.180 28 F -0.194 7.194 29 C -0.102 4.102 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.239 0.761 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.050 0.950 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.804 13.490 -8.728 16.770 hybrid contribution -1.133 -0.450 -0.253 1.245 sum 3.670 13.040 -8.981 16.254 Atomic orbital electron populations 1.22415 0.86111 1.03090 1.00848 1.62227 1.08831 1.13527 1.41885 1.22868 0.96621 0.89975 1.02066 1.22748 0.92173 0.96617 0.89915 1.88126 1.69234 1.21709 1.48308 1.21923 0.93134 0.85673 0.97518 0.88811 1.19994 0.80843 0.82021 0.86707 1.90734 1.37988 1.65813 1.44744 1.45845 1.55179 1.09507 1.26753 1.21345 0.99198 0.90901 0.88293 1.22972 1.01808 0.94103 0.98795 0.87883 1.20903 0.88188 0.88303 1.00020 1.44084 1.45158 1.02976 1.38952 1.19105 1.12466 1.13504 0.94184 0.91329 1.25072 0.97429 1.01016 0.95649 1.70010 1.41776 1.29254 1.13151 0.86340 0.79443 0.80026 0.80754 1.20843 1.21532 1.20759 1.20848 0.84097 0.99086 0.91593 1.23272 1.03719 0.90934 1.03935 1.21021 0.74649 0.96223 0.81738 1.92969 1.89845 1.87335 1.47853 1.92961 1.32828 1.97313 1.96309 1.22715 0.93790 1.00656 0.93033 0.95193 0.90984 0.90548 0.89304 0.93603 0.91938 0.87831 0.76053 0.90540 0.90850 0.91681 0.94943 0.93235 0.88097 0.94955 0.89545 0.90520 0.88496 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.60 60.07 0.58 0.76 16 2 N -0.54 -5.01 4.99 -242.59 -1.21 -6.22 16 3 C 0.01 0.11 5.66 -3.71 -0.02 0.09 16 4 C 0.06 0.55 7.01 37.21 0.26 0.81 16 5 O -0.36 -4.60 10.01 -55.07 -0.55 -5.15 16 6 C 0.08 0.92 3.22 -27.83 -0.09 0.83 16 7 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 8 C 0.52 7.43 7.18 -10.98 -0.08 7.35 16 9 O -0.52 -9.66 16.51 -14.27 -0.24 -9.89 16 10 N -0.72 -9.15 5.29 -60.29 -0.32 -9.46 16 11 C 0.13 1.88 4.83 -4.04 -0.02 1.86 16 12 C -0.16 -2.46 2.03 -90.51 -0.18 -2.64 16 13 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.15 2.83 5.39 -3.72 -0.02 2.81 16 15 N -0.59 -13.30 2.99 -172.33 -0.52 -13.82 16 16 C -0.26 -6.52 9.58 -15.06 -0.14 -6.67 16 17 H 0.07 1.63 7.89 -52.49 -0.41 1.21 16 18 C 0.01 0.20 4.91 -17.43 -0.09 0.12 16 19 N -0.90 -24.41 11.19 55.49 0.62 -23.79 16 20 Si 0.91 20.13 29.59 -169.99 -5.03 15.10 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.17 3.74 5.11 -3.71 -0.02 3.72 16 25 C -0.18 -3.20 5.62 -26.61 -0.15 -3.35 16 26 C 0.30 5.22 1.63 -26.69 -0.04 5.18 16 27 F -0.20 -3.77 15.73 2.25 0.04 -3.74 16 28 F -0.21 -3.64 16.41 2.25 0.04 -3.60 16 29 C 0.03 0.28 4.90 -3.71 -0.02 0.26 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 4.25 7.57 -40.82 -0.31 3.94 16 38 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 39 H 0.07 1.13 7.63 -51.93 -0.40 0.74 16 40 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 41 H 0.03 0.65 7.93 -51.93 -0.41 0.24 16 42 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.10 2.46 6.04 -51.93 -0.31 2.15 16 44 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.10 0.90 8.01 -51.93 -0.42 0.48 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -31.01 384.80 -9.07 -40.08 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.66 Total: 3.59 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -0.04 Total: 11.11 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -1.42 Total: -53.29 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.79 Total: -15.04 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.07 Total: -7.34 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.01 -9.07 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046926327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.145 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds