Wall clock time and date at job start Wed Apr 1 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47010 * 111.00407 * 2 1 4 4 C 1.53102 * 109.25628 * 182.39373 * 3 2 1 5 5 O 1.43009 * 109.26043 * 303.14815 * 4 3 2 6 6 C 1.43016 * 113.73710 * 58.67085 * 5 4 3 7 7 C 1.47023 * 111.00086 * 123.63688 * 2 1 3 8 8 H 1.08998 * 109.50561 * 297.58285 * 7 2 1 9 9 C 1.50700 * 109.50540 * 57.66835 * 7 2 1 10 10 O 1.21282 * 120.00370 * 27.58735 * 9 7 2 11 11 N 1.34779 * 119.99950 * 207.58915 * 9 7 2 12 12 C 1.46497 * 120.00117 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47258 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.49864 * 55.05734 * 13 12 11 15 15 C 1.53190 * 109.49520 * 294.99850 * 13 12 11 16 16 N 1.46927 * 108.77807 * 185.38144 * 15 13 12 17 17 C 1.36939 * 120.63086 * 233.60984 * 16 15 13 18 18 H 1.08000 * 119.99803 * 29.65593 * 17 16 15 19 19 C 1.38809 * 119.99991 * 209.65340 * 17 16 15 20 20 N 1.31623 * 119.99865 * 16.35265 * 19 17 16 21 21 Si 1.86797 * 120.00266 * 196.35672 * 19 17 16 22 22 H 1.48500 * 109.46893 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47485 * 119.99575 * 21 19 17 24 24 H 1.48497 * 109.47163 * 240.00199 * 21 19 17 25 25 C 1.46928 * 118.73867 * 53.60455 * 16 15 13 26 26 C 1.53192 * 108.77572 * 306.39689 * 25 16 15 27 27 C 1.53035 * 109.52750 * 175.14304 * 13 12 11 28 28 F 1.39903 * 109.45859 * 301.35542 * 27 13 12 29 29 F 1.39906 * 109.45745 * 61.32333 * 27 13 12 30 30 H 1.09005 * 109.46859 * 292.78111 * 1 2 3 31 31 H 1.08997 * 109.46640 * 52.77595 * 1 2 3 32 32 H 1.08994 * 109.47571 * 172.78210 * 1 2 3 33 33 H 1.09000 * 109.50699 * 302.32177 * 3 2 1 34 34 H 1.08995 * 109.50921 * 62.41349 * 3 2 1 35 35 H 1.09001 * 109.51041 * 63.08538 * 4 3 2 36 36 H 1.09004 * 109.50348 * 183.21675 * 4 3 2 37 37 H 1.09010 * 109.50722 * 181.39286 * 6 5 4 38 38 H 1.08995 * 109.50473 * 61.26951 * 6 5 4 39 39 H 0.97000 * 119.99737 * 359.97438 * 11 9 7 40 40 H 1.08990 * 109.47582 * 59.99723 * 12 11 9 41 41 H 1.09004 * 109.46788 * 299.99181 * 12 11 9 42 42 H 1.08999 * 109.58769 * 305.16657 * 15 13 12 43 43 H 1.09007 * 109.58754 * 65.59366 * 15 13 12 44 44 H 0.96996 * 120.00137 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.58941 * 186.61007 * 25 16 15 46 46 H 1.08997 * 109.70348 * 66.24925 * 25 16 15 47 47 H 1.09005 * 109.49613 * 294.68165 * 26 25 16 48 48 H 1.08996 * 109.52429 * 174.60446 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3262 -0.0604 5 8 4.0176 0.5572 1.0402 6 6 3.5249 -0.7851 1.0709 7 6 1.9959 -0.7603 1.1428 8 1 1.6822 -0.2848 2.0720 9 6 1.4670 -2.1706 1.0957 10 8 1.1681 -2.6711 0.0321 11 7 1.3259 -2.8759 2.2355 12 6 0.8123 -4.2471 2.1897 13 6 0.7518 -4.8167 3.6085 14 1 0.1623 -4.1539 4.2419 15 6 2.1710 -4.9346 4.1730 16 7 2.1060 -5.6011 5.4808 17 6 2.6708 -5.0242 6.5868 18 1 2.7351 -3.9487 6.6615 19 6 3.1607 -5.8216 7.6119 20 7 3.3821 -7.1019 7.4013 21 14 3.5055 -5.0779 9.2904 22 1 3.1762 -3.6301 9.2674 23 1 2.6731 -5.7591 10.3142 24 1 4.9420 -5.2530 9.6238 25 6 1.4234 -6.8985 5.5793 26 6 0.0125 -6.7586 4.9990 27 6 0.1033 -6.2025 3.5761 28 9 -1.1816 -6.1032 3.0316 29 9 0.8780 -7.0613 2.7889 30 1 -0.3633 0.3979 0.9476 31 1 -0.3632 0.6217 -0.8183 32 1 -0.3634 -1.0194 -0.1291 33 1 1.6135 1.9091 -0.8682 34 1 1.6822 1.8828 0.9106 35 1 3.8386 0.8641 -0.9965 36 1 3.9223 2.3396 -0.0030 37 1 3.9222 -1.2987 1.9465 38 1 3.8385 -1.3085 0.1678 39 1 1.5653 -2.4758 3.0861 40 1 1.4732 -4.8625 1.5794 41 1 -0.1874 -4.2462 1.7553 42 1 2.7870 -5.5232 3.4932 43 1 2.6012 -3.9399 4.2908 44 1 3.7241 -7.6592 8.1177 45 1 1.3601 -7.1996 6.6249 46 1 1.9775 -7.6490 5.0157 47 1 -0.5701 -6.0774 5.6193 48 1 -0.4711 -7.7351 4.9778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046931000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:14 Heat of formation + Delta-G solvation = -147.705326 kcal Electronic energy + Delta-G solvation = -32568.382495 eV Core-core repulsion = 27908.901202 eV Total energy + Delta-G solvation = -4659.481293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -48.56398 -46.51552 -40.66418 -38.89591 -37.39438 -35.89882 -34.96822 -32.82927 -31.93020 -30.74256 -30.22482 -29.06739 -26.12718 -25.25464 -24.59137 -24.44143 -22.55741 -21.75082 -21.13210 -20.22953 -19.56325 -17.79141 -17.01501 -16.87444 -16.77566 -16.69782 -16.13933 -15.74860 -15.52362 -15.40157 -15.16828 -14.88560 -14.67202 -14.48196 -14.12359 -14.00737 -13.62688 -13.32684 -13.17817 -13.14493 -12.97126 -12.82893 -12.62750 -12.44650 -12.25481 -11.97032 -11.72186 -11.64947 -11.59641 -11.50014 -11.27690 -11.00697 -10.87900 -10.67004 -10.54269 -10.21434 -10.12994 -9.94462 -9.83065 -9.61132 -9.09223 -8.71456 -8.65496 -6.91591 -5.97568 -3.44164 2.46676 2.85183 3.26994 3.35588 3.37014 3.41943 3.66018 4.16480 4.33391 4.47764 4.50386 4.59933 4.60206 4.64525 4.71867 4.85768 4.87605 4.89972 5.16470 5.19587 5.23481 5.23971 5.24970 5.37068 5.38456 5.47025 5.49264 5.59237 5.60650 5.74091 5.86460 5.95066 6.11233 6.22540 6.27649 6.32937 6.38847 6.46872 6.57963 6.65045 6.76613 7.05342 7.40076 7.42171 7.62566 8.14076 8.23876 8.99161 9.61217 10.17369 11.11610 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003219 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.162475 B = 8694.977528 C =10589.780057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.018 3.982 4 C 0.059 3.941 5 O -0.377 6.377 6 C 0.076 3.924 7 C 0.032 3.968 8 H 0.071 0.929 9 C 0.519 3.481 10 O -0.518 6.518 11 N -0.721 5.721 12 C 0.126 3.874 13 C -0.155 4.155 14 H 0.101 0.899 15 C 0.153 3.847 16 N -0.590 5.590 17 C -0.264 4.264 18 H 0.069 0.931 19 C 0.009 3.991 20 N -0.897 5.897 21 Si 0.905 3.095 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.171 3.829 26 C -0.179 4.179 27 C 0.301 3.699 28 F -0.214 7.214 29 F -0.199 7.199 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.257 0.743 45 H 0.098 0.902 46 H 0.033 0.967 47 H 0.085 0.915 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 13.310 -11.129 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.245 5.245 3 C -0.110 4.110 4 C -0.018 4.018 5 O -0.295 6.295 6 C -0.002 4.002 7 C -0.080 4.080 8 H 0.089 0.911 9 C 0.303 3.697 10 O -0.393 6.393 11 N -0.374 5.374 12 C 0.002 3.998 13 C -0.177 4.177 14 H 0.120 0.880 15 C 0.026 3.974 16 N -0.311 5.311 17 C -0.393 4.393 18 H 0.087 0.913 19 C -0.191 4.191 20 N -0.540 5.540 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.215 1.215 25 C 0.045 3.955 26 C -0.219 4.219 27 C 0.264 3.736 28 F -0.195 7.195 29 F -0.180 7.180 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.239 0.761 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.116 0.884 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.758 12.636 -12.100 18.131 hybrid contribution -0.422 0.657 1.729 1.897 sum -5.181 13.293 -10.371 17.638 Atomic orbital electron populations 1.22510 0.86158 1.03879 1.00319 1.61969 1.08872 1.12862 1.40749 1.22867 0.96654 0.89362 1.02095 1.22735 0.92078 0.96633 0.90316 1.88039 1.69441 1.23543 1.48470 1.22580 0.89227 0.84458 1.03941 1.22338 0.98175 0.93098 0.94421 0.91136 1.20106 0.78480 0.87024 0.84074 1.90717 1.48682 1.70607 1.29285 1.46009 1.66604 1.15345 1.09477 1.21330 1.00087 0.81852 0.96516 1.22976 1.03151 0.94636 0.96929 0.88047 1.20920 0.89911 0.97914 0.88691 1.44072 1.62956 1.20936 1.03171 1.19169 1.33914 0.91075 0.95142 0.91336 1.25130 0.97956 0.96105 0.99888 1.70024 1.46761 1.05375 1.31881 0.86204 0.77681 0.78691 0.84036 1.20127 1.21410 1.21528 1.20805 0.85316 0.87510 1.01863 1.23272 1.04694 1.01854 0.92050 1.21020 0.73870 0.89750 0.88974 1.92958 1.41458 1.96843 1.88213 1.92971 1.75333 1.72632 1.77037 0.95590 0.90912 0.89959 0.89089 0.93700 0.91879 0.88112 0.87359 0.91211 0.76116 0.90531 0.91029 0.94889 0.91614 0.93335 0.88406 0.94870 0.89593 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.14 60.06 0.55 0.74 16 2 N -0.52 -5.65 4.53 -235.97 -1.07 -6.72 16 3 C 0.02 0.15 5.65 -3.71 -0.02 0.13 16 4 C 0.06 0.50 7.01 37.21 0.26 0.76 16 5 O -0.38 -4.11 10.83 -35.23 -0.38 -4.50 16 6 C 0.08 0.81 6.27 37.20 0.23 1.05 16 7 C 0.03 0.35 2.38 -68.75 -0.16 0.19 16 8 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 9 C 0.52 6.90 6.06 -10.98 -0.07 6.83 16 10 O -0.52 -8.74 15.33 5.56 0.09 -8.65 16 11 N -0.72 -8.95 5.33 -60.30 -0.32 -9.27 16 12 C 0.13 1.83 4.83 -4.04 -0.02 1.81 16 13 C -0.16 -2.44 2.03 -90.50 -0.18 -2.63 16 14 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 15 C 0.15 2.83 5.40 -3.71 -0.02 2.81 16 16 N -0.59 -13.35 2.99 -172.32 -0.51 -13.86 16 17 C -0.26 -6.58 9.57 -15.06 -0.14 -6.72 16 18 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16 19 C 0.01 0.23 4.92 -17.43 -0.09 0.15 16 20 N -0.90 -24.48 11.27 55.49 0.63 -23.85 16 21 Si 0.90 20.26 29.58 -169.99 -5.03 15.23 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 25 C 0.17 3.77 5.08 -3.71 -0.02 3.75 16 26 C -0.18 -3.19 5.62 -26.61 -0.15 -3.34 16 27 C 0.30 5.19 1.63 -26.69 -0.04 5.14 16 28 F -0.21 -3.61 16.41 2.25 0.04 -3.57 16 29 F -0.20 -3.74 15.73 2.25 0.04 -3.71 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.08 1.01 6.31 -51.93 -0.33 0.69 16 33 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.04 8.14 -51.92 -0.42 0.62 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 4.28 7.70 -40.82 -0.31 3.97 16 40 H 0.08 1.22 7.97 -51.93 -0.41 0.80 16 41 H 0.07 1.08 7.63 -51.93 -0.40 0.68 16 42 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 43 H 0.07 1.12 7.13 -51.92 -0.37 0.75 16 44 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 45 H 0.10 2.39 6.16 -51.93 -0.32 2.07 16 46 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -30.21 381.46 -8.24 -38.45 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.58 Total: 4.04 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 0.13 Total: 10.66 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -1.28 Total: -53.70 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.30 Total: -13.15 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.07 Total: -7.28 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.21 -8.24 -38.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046931000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.257 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds