Wall clock time and date at job start Wed Apr 1 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47010 * 111.00407 * 2 1 4 4 C 1.53102 * 109.25628 * 182.39373 * 3 2 1 5 5 O 1.43009 * 109.26043 * 303.14815 * 4 3 2 6 6 C 1.43016 * 113.73710 * 58.67085 * 5 4 3 7 7 C 1.47023 * 111.00086 * 123.63688 * 2 1 3 8 8 H 1.08998 * 109.50561 * 297.58285 * 7 2 1 9 9 C 1.50700 * 109.50540 * 57.66835 * 7 2 1 10 10 O 1.21282 * 120.00370 * 27.58735 * 9 7 2 11 11 N 1.34779 * 119.99950 * 207.58915 * 9 7 2 12 12 C 1.46497 * 120.00117 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47258 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.49864 * 55.05734 * 13 12 11 15 15 C 1.53190 * 109.49520 * 294.99850 * 13 12 11 16 16 N 1.46927 * 108.77807 * 185.38144 * 15 13 12 17 17 C 1.36939 * 120.63086 * 233.60984 * 16 15 13 18 18 H 1.08000 * 119.99803 * 29.65593 * 17 16 15 19 19 C 1.38809 * 119.99991 * 209.65340 * 17 16 15 20 20 N 1.31623 * 119.99865 * 16.35265 * 19 17 16 21 21 Si 1.86797 * 120.00266 * 196.35672 * 19 17 16 22 22 H 1.48500 * 109.46893 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47485 * 119.99575 * 21 19 17 24 24 H 1.48497 * 109.47163 * 240.00199 * 21 19 17 25 25 C 1.46928 * 118.73867 * 53.60455 * 16 15 13 26 26 C 1.53192 * 108.77572 * 306.39689 * 25 16 15 27 27 C 1.53035 * 109.52750 * 175.14304 * 13 12 11 28 28 F 1.39903 * 109.45859 * 301.35542 * 27 13 12 29 29 F 1.39906 * 109.45745 * 61.32333 * 27 13 12 30 30 H 1.09005 * 109.46859 * 292.78111 * 1 2 3 31 31 H 1.08997 * 109.46640 * 52.77595 * 1 2 3 32 32 H 1.08994 * 109.47571 * 172.78210 * 1 2 3 33 33 H 1.09000 * 109.50699 * 302.32177 * 3 2 1 34 34 H 1.08995 * 109.50921 * 62.41349 * 3 2 1 35 35 H 1.09001 * 109.51041 * 63.08538 * 4 3 2 36 36 H 1.09004 * 109.50348 * 183.21675 * 4 3 2 37 37 H 1.09010 * 109.50722 * 181.39286 * 6 5 4 38 38 H 1.08995 * 109.50473 * 61.26951 * 6 5 4 39 39 H 0.97000 * 119.99737 * 359.97438 * 11 9 7 40 40 H 1.08990 * 109.47582 * 59.99723 * 12 11 9 41 41 H 1.09004 * 109.46788 * 299.99181 * 12 11 9 42 42 H 1.08999 * 109.58769 * 305.16657 * 15 13 12 43 43 H 1.09007 * 109.58754 * 65.59366 * 15 13 12 44 44 H 0.96996 * 120.00137 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.58941 * 186.61007 * 25 16 15 46 46 H 1.08997 * 109.70348 * 66.24925 * 25 16 15 47 47 H 1.09005 * 109.49613 * 294.68165 * 26 25 16 48 48 H 1.08996 * 109.52429 * 174.60446 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3262 -0.0604 5 8 4.0176 0.5572 1.0402 6 6 3.5249 -0.7851 1.0709 7 6 1.9959 -0.7603 1.1428 8 1 1.6822 -0.2848 2.0720 9 6 1.4670 -2.1706 1.0957 10 8 1.1681 -2.6711 0.0321 11 7 1.3259 -2.8759 2.2355 12 6 0.8123 -4.2471 2.1897 13 6 0.7518 -4.8167 3.6085 14 1 0.1623 -4.1539 4.2419 15 6 2.1710 -4.9346 4.1730 16 7 2.1060 -5.6011 5.4808 17 6 2.6708 -5.0242 6.5868 18 1 2.7351 -3.9487 6.6615 19 6 3.1607 -5.8216 7.6119 20 7 3.3821 -7.1019 7.4013 21 14 3.5055 -5.0779 9.2904 22 1 3.1762 -3.6301 9.2674 23 1 2.6731 -5.7591 10.3142 24 1 4.9420 -5.2530 9.6238 25 6 1.4234 -6.8985 5.5793 26 6 0.0125 -6.7586 4.9990 27 6 0.1033 -6.2025 3.5761 28 9 -1.1816 -6.1032 3.0316 29 9 0.8780 -7.0613 2.7889 30 1 -0.3633 0.3979 0.9476 31 1 -0.3632 0.6217 -0.8183 32 1 -0.3634 -1.0194 -0.1291 33 1 1.6135 1.9091 -0.8682 34 1 1.6822 1.8828 0.9106 35 1 3.8386 0.8641 -0.9965 36 1 3.9223 2.3396 -0.0030 37 1 3.9222 -1.2987 1.9465 38 1 3.8385 -1.3085 0.1678 39 1 1.5653 -2.4758 3.0861 40 1 1.4732 -4.8625 1.5794 41 1 -0.1874 -4.2462 1.7553 42 1 2.7870 -5.5232 3.4932 43 1 2.6012 -3.9399 4.2908 44 1 3.7241 -7.6592 8.1177 45 1 1.3601 -7.1996 6.6249 46 1 1.9775 -7.6490 5.0157 47 1 -0.5701 -6.0774 5.6193 48 1 -0.4711 -7.7351 4.9778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046931000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:12 Heat of formation + Delta-G solvation = -169.135957 kcal Electronic energy + Delta-G solvation = -32569.311797 eV Core-core repulsion = 27908.901202 eV Total energy + Delta-G solvation = -4660.410595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.99692 -47.95366 -41.60047 -39.86925 -38.89019 -36.78768 -36.24753 -34.42564 -32.99438 -32.10734 -31.78779 -29.85076 -27.43796 -26.96283 -25.54873 -25.24041 -24.07040 -23.14447 -22.16776 -21.33511 -20.93104 -19.08957 -18.48160 -18.27699 -17.82444 -17.58675 -17.18491 -17.06633 -16.88205 -16.64402 -16.34954 -15.98972 -15.77501 -15.54815 -15.38996 -15.30276 -14.85449 -14.81038 -14.64754 -14.32004 -14.26855 -14.00248 -13.81274 -13.47201 -13.26083 -13.24144 -13.17699 -13.05176 -12.97641 -12.72256 -12.61851 -12.27128 -12.25241 -12.16068 -11.92243 -11.74698 -11.62337 -11.35345 -11.06402 -10.65127 -10.58092 -10.22079 -9.47115 -8.77903 -7.90727 -5.39159 1.42940 1.50048 1.53643 1.62455 1.83090 2.49744 2.65134 2.76455 2.92509 3.16193 3.23502 3.27976 3.51206 3.56240 3.66212 3.69016 3.89140 3.90955 3.92693 4.07381 4.19238 4.24408 4.25559 4.46451 4.48259 4.50030 4.55792 4.59711 4.64367 4.65643 4.76515 4.82519 4.85017 4.88583 4.91615 4.96018 5.09192 5.25262 5.29640 5.58717 5.67379 5.68753 5.87347 6.02823 6.35061 6.42672 7.09145 7.11212 7.76270 8.29799 9.17562 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003219 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.162475 B = 8694.977528 C =10589.780057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.539 5.539 3 C 0.021 3.979 4 C 0.054 3.946 5 O -0.389 6.389 6 C 0.077 3.923 7 C 0.038 3.962 8 H 0.087 0.913 9 C 0.522 3.478 10 O -0.557 6.557 11 N -0.711 5.711 12 C 0.138 3.862 13 C -0.138 4.138 14 H 0.120 0.880 15 C 0.154 3.846 16 N -0.605 5.605 17 C -0.264 4.264 18 H 0.080 0.920 19 C -0.044 4.044 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.293 1.293 24 H -0.297 1.297 25 C 0.178 3.822 26 C -0.168 4.168 27 C 0.299 3.701 28 F -0.207 7.207 29 F -0.210 7.210 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.415 0.585 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.016 0.984 43 H 0.084 0.916 44 H 0.251 0.749 45 H 0.071 0.929 46 H 0.004 0.996 47 H 0.100 0.900 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.724 16.023 -11.056 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.107 4.107 4 C -0.023 4.023 5 O -0.307 6.307 6 C 0.000 4.000 7 C -0.074 4.074 8 H 0.105 0.895 9 C 0.308 3.692 10 O -0.434 6.434 11 N -0.365 5.365 12 C 0.013 3.987 13 C -0.159 4.159 14 H 0.138 0.862 15 C 0.028 3.972 16 N -0.327 5.327 17 C -0.393 4.393 18 H 0.098 0.902 19 C -0.240 4.240 20 N -0.580 5.580 21 Si 0.795 3.205 22 H -0.185 1.185 23 H -0.220 1.220 24 H -0.225 1.225 25 C 0.052 3.948 26 C -0.208 4.208 27 C 0.262 3.738 28 F -0.188 7.188 29 F -0.191 7.191 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.034 0.966 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.022 0.978 47 H 0.118 0.882 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.590 15.394 -12.031 20.321 hybrid contribution -0.157 -0.176 1.615 1.632 sum -5.747 15.217 -10.416 19.316 Atomic orbital electron populations 1.22450 0.85889 1.02616 1.01536 1.61963 1.09322 1.14406 1.40846 1.22941 0.96398 0.88064 1.03271 1.22960 0.92346 0.97513 0.89448 1.88024 1.69787 1.23460 1.49474 1.22548 0.89063 0.84715 1.03713 1.22286 0.98159 0.91521 0.95409 0.89529 1.20527 0.77521 0.87777 0.83414 1.90702 1.50391 1.71594 1.30712 1.45889 1.66127 1.14442 1.10037 1.21072 0.99772 0.82663 0.95188 1.22774 1.01225 0.94193 0.97740 0.86235 1.20983 0.91535 0.98060 0.86603 1.44300 1.63151 1.21011 1.04257 1.19573 1.32455 0.91690 0.95606 0.90193 1.25849 0.98684 0.96462 1.03049 1.70175 1.48619 1.06702 1.32462 0.85232 0.76596 0.78646 0.80075 1.18469 1.21965 1.22462 1.20522 0.87358 0.86885 1.00008 1.23096 1.01972 1.03316 0.92419 1.21068 0.74096 0.90240 0.88365 1.92969 1.40972 1.96822 1.88049 1.92957 1.75712 1.73150 1.77305 0.94547 0.89341 0.92584 0.87237 0.93045 0.92304 0.85587 0.86505 0.92619 0.74741 0.92129 0.91098 0.96615 0.89758 0.93998 0.91085 0.97780 0.88165 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.14 127.69 1.17 1.59 16 2 N -0.54 -10.77 4.53 -900.49 -4.08 -14.85 16 3 C 0.02 0.29 5.65 86.32 0.49 0.77 16 4 C 0.05 0.78 7.01 72.02 0.50 1.28 16 5 O -0.39 -7.75 10.83 -148.98 -1.61 -9.36 16 6 C 0.08 1.56 6.27 72.01 0.45 2.01 16 7 C 0.04 0.78 2.38 44.18 0.10 0.89 16 8 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 9 C 0.52 13.30 6.06 87.66 0.53 13.83 16 10 O -0.56 -18.67 15.33 -3.03 -0.05 -18.72 16 11 N -0.71 -16.43 5.33 -463.07 -2.47 -18.90 16 12 C 0.14 3.82 4.83 86.38 0.42 4.24 16 13 C -0.14 -4.11 2.03 -10.72 -0.02 -4.13 16 14 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 15 C 0.15 5.55 5.40 86.36 0.47 6.02 16 16 N -0.60 -27.11 2.99 -699.10 -2.09 -29.19 16 17 C -0.26 -12.90 9.57 84.03 0.80 -12.10 16 18 H 0.08 3.67 7.88 -2.91 -0.02 3.65 16 19 C -0.04 -2.29 4.92 84.86 0.42 -1.87 16 20 N -0.93 -52.13 11.27 21.65 0.24 -51.89 16 21 Si 0.97 41.52 29.58 68.60 2.03 43.55 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -13.09 7.11 99.48 0.71 -12.39 16 25 C 0.18 7.96 5.08 86.36 0.44 8.39 16 26 C -0.17 -5.83 5.62 30.67 0.17 -5.66 16 27 C 0.30 9.93 1.63 30.62 0.05 9.98 16 28 F -0.21 -6.58 16.41 44.97 0.74 -5.85 16 29 F -0.21 -7.87 15.73 44.97 0.71 -7.16 16 30 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 32 H 0.06 1.34 6.31 -2.39 -0.02 1.33 16 33 H 0.11 1.12 8.11 -2.39 -0.02 1.10 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.42 7.72 7.70 -92.71 -0.71 7.01 16 40 H 0.06 1.90 7.97 -2.39 -0.02 1.89 16 41 H 0.07 2.03 7.63 -2.38 -0.02 2.01 16 42 H 0.02 0.63 7.92 -2.39 -0.02 0.61 16 43 H 0.08 2.69 7.13 -2.38 -0.02 2.67 16 44 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 45 H 0.07 3.56 6.16 -2.39 -0.01 3.54 16 46 H 0.00 0.20 7.92 -2.39 -0.02 0.18 16 47 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 48 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -65.51 381.46 -0.32 -65.84 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.26 Total: 21.29 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 5.99 Total: 25.25 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -8.39 Total: -114.84 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.66 Total: -28.08 kcal Atomic # 9 Polarization: -14.45 SS G_CDS: 1.45 Total: -13.01 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -65.51 -0.32 -65.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046931000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.297 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds