Wall clock time and date at job start Wed Apr 1 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00018 * 2 1 4 4 C 1.39049 * 119.99584 * 180.02562 * 2 1 3 5 5 C 1.39296 * 119.91018 * 5.08874 * 4 2 1 6 6 C 1.36534 * 120.26790 * 179.97438 * 5 4 2 7 7 C 1.39852 * 120.07880 * 0.03783 * 6 5 4 8 8 C 1.47375 * 120.09116 * 179.97438 * 7 6 5 9 9 O 1.21613 * 119.99767 * 172.19104 * 8 7 6 10 10 N 1.34778 * 119.99957 * 352.19895 * 8 7 6 11 11 C 1.46663 * 125.34116 * 5.30682 * 10 8 7 12 12 C 1.53724 * 107.94400 * 180.54834 * 11 10 8 13 13 H 1.09001 * 112.55691 * 139.72400 * 12 11 10 14 14 C 1.53696 * 109.33725 * 266.25213 * 12 11 10 15 15 N 1.46647 * 108.00532 * 127.56090 * 14 12 11 16 16 C 1.36931 * 125.32697 * 180.81799 * 15 14 12 17 17 H 1.08000 * 119.99896 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00414 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99710 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00238 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46894 * 90.00110 * 20 18 16 22 22 H 1.48502 * 109.47263 * 210.00212 * 20 18 16 23 23 H 1.48503 * 109.46987 * 330.00629 * 20 18 16 24 24 C 1.46741 * 109.33906 * 0.83137 * 15 14 12 25 25 C 1.53926 * 106.72553 * 341.66358 * 24 15 14 26 26 H 1.09005 * 113.01705 * 150.83103 * 25 24 15 27 27 C 1.46776 * 125.33677 * 185.00853 * 10 8 7 28 28 C 1.40063 * 119.81828 * 359.97438 * 7 6 5 29 29 F 1.35095 * 120.13576 * 180.02562 * 28 7 6 30 30 C 1.38011 * 119.73320 * 0.26824 * 28 7 6 31 31 H 1.09006 * 109.46805 * 270.00050 * 1 2 3 32 32 H 1.08998 * 109.47299 * 29.99520 * 1 2 3 33 33 H 1.08989 * 109.47416 * 149.99779 * 1 2 3 34 34 H 1.08998 * 109.47213 * 174.97644 * 3 2 1 35 35 H 1.09001 * 109.47048 * 294.97414 * 3 2 1 36 36 H 1.09002 * 109.47190 * 54.96977 * 3 2 1 37 37 H 1.07999 * 119.87068 * 359.97438 * 5 4 2 38 38 H 1.08005 * 119.96116 * 180.02562 * 6 5 4 39 39 H 1.08994 * 109.77302 * 300.17513 * 11 10 8 40 40 H 1.09002 * 109.76913 * 60.92523 * 11 10 8 41 41 H 1.08999 * 109.76264 * 247.19539 * 14 12 11 42 42 H 1.08994 * 109.76569 * 7.91555 * 14 12 11 43 43 H 0.96995 * 120.00088 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.01031 * 222.34470 * 24 15 14 45 45 H 1.09006 * 110.00571 * 100.98168 * 24 15 14 46 46 H 1.09006 * 110.02652 * 280.77159 * 27 10 8 47 47 H 1.08997 * 110.03050 * 42.18332 * 27 10 8 48 48 H 1.07998 * 120.04069 * 179.70119 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2043 -0.0005 5 6 1.4659 -2.4070 -0.1082 6 6 2.1411 -3.5937 -0.1100 7 6 3.5355 -3.6069 -0.0028 8 6 4.2646 -4.8876 -0.0041 9 8 5.4797 -4.8955 -0.0542 10 7 3.5847 -6.0501 0.0500 11 6 2.1248 -6.1822 0.0024 12 6 1.7808 -7.6768 0.1066 13 1 0.9136 -7.8631 0.7401 14 6 1.6319 -8.2644 -1.3058 15 7 2.4924 -9.4483 -1.3972 16 6 2.6422 -10.2344 -2.5084 17 1 3.3012 -11.0896 -2.4800 18 6 1.9472 -9.9321 -3.6713 19 7 1.1445 -8.8896 -3.7061 20 14 2.1510 -11.0049 -5.1869 21 1 1.1415 -12.0937 -5.1620 22 1 1.9593 -10.1799 -6.4067 23 1 3.5142 -11.5939 -5.1967 24 6 3.1675 -9.6589 -0.1114 25 6 3.0791 -8.3288 0.6583 26 1 3.0674 -8.4624 1.7401 27 6 4.1896 -7.3830 0.1595 28 6 4.2371 -2.3995 0.1059 29 9 5.5841 -2.4048 0.2092 30 6 3.5465 -1.2047 0.1120 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8899 -0.5138 34 1 3.2658 1.0715 0.0900 35 1 2.0034 1.8003 -0.9316 36 1 1.8684 1.8783 0.8415 37 1 0.3890 -2.4010 -0.1905 38 1 1.5978 -4.5233 -0.1941 39 1 1.6784 -5.6419 0.8371 40 1 1.7490 -5.7820 -0.9393 41 1 0.5941 -8.5490 -1.4790 42 1 1.9402 -7.5266 -2.0464 43 1 0.6591 -8.6781 -4.5188 44 1 4.2115 -9.9251 -0.2775 45 1 2.6656 -10.4480 0.4485 46 1 4.5522 -7.7097 -0.8152 47 1 5.0108 -7.3626 0.8760 48 1 4.0821 -0.2711 0.2004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048861311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:18 Heat of formation + Delta-G solvation = 27.513607 kcal Electronic energy + Delta-G solvation = -31134.850444 eV Core-core repulsion = 26913.736439 eV Total energy + Delta-G solvation = -4221.114006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.76835 -40.55351 -39.50655 -38.02076 -36.20823 -34.96955 -32.43753 -31.36285 -30.54992 -30.20551 -29.23595 -28.43959 -26.17999 -25.73932 -25.06667 -23.29910 -22.45719 -21.45434 -20.12557 -19.82975 -19.39127 -17.72677 -17.29782 -16.79911 -16.71737 -16.02142 -15.79022 -15.53842 -15.32912 -15.24368 -14.86636 -14.66025 -14.41954 -14.10151 -13.58608 -13.49727 -13.08774 -12.97881 -12.85015 -12.75746 -12.67207 -12.44345 -12.33977 -12.23702 -12.01484 -11.75749 -11.45825 -11.42198 -11.07221 -10.88181 -10.79116 -10.18011 -10.10197 -10.05921 -10.05065 -9.83885 -9.66357 -9.52432 -8.97434 -8.60150 -8.27470 -7.64283 -6.83444 -5.73233 -3.05853 0.89826 1.17434 2.65891 2.99591 3.28779 3.40545 3.46177 3.47733 3.79927 4.21441 4.42267 4.49981 4.56679 4.66499 4.82863 4.83711 4.89039 4.93860 5.05089 5.14377 5.20555 5.27873 5.29624 5.33066 5.37196 5.43333 5.51354 5.66386 5.69570 5.73630 5.78066 5.94777 5.97325 6.06644 6.18633 6.19548 6.25207 6.40710 6.50913 6.57529 6.63158 6.71595 6.79185 6.84343 7.06153 7.53875 7.54832 7.79441 7.83766 8.25841 8.48240 9.21953 9.82316 10.45691 11.38663 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.002839 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.016530 B = 9860.822115 C =10653.365348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.084 3.916 4 C 0.263 3.737 5 C -0.217 4.217 6 C -0.045 4.045 7 C -0.226 4.226 8 C 0.575 3.425 9 O -0.541 6.541 10 N -0.603 5.603 11 C 0.102 3.898 12 C -0.126 4.126 13 H 0.093 0.907 14 C 0.185 3.815 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.145 3.855 25 C -0.111 4.111 26 H 0.090 0.910 27 C 0.123 3.877 28 C 0.208 3.792 29 F -0.116 7.116 30 C -0.257 4.257 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.134 0.866 38 H 0.174 0.826 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.252 0.748 44 H 0.039 0.961 45 H 0.021 0.979 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 18.985 11.264 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.338 5.338 3 C -0.059 4.059 4 C 0.159 3.841 5 C -0.239 4.239 6 C -0.063 4.063 7 C -0.232 4.232 8 C 0.366 3.634 9 O -0.420 6.420 10 N -0.336 5.336 11 C -0.021 4.021 12 C -0.146 4.146 13 H 0.111 0.889 14 C 0.060 3.940 15 N -0.328 5.328 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.018 3.982 25 C -0.131 4.131 26 H 0.108 0.892 27 C 0.001 3.999 28 C 0.187 3.813 29 F -0.094 7.094 30 C -0.281 4.281 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.152 0.848 38 H 0.190 0.810 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.120 19.237 11.003 22.380 hybrid contribution 0.170 -0.344 -0.889 0.968 sum -2.950 18.893 10.114 21.632 Atomic orbital electron populations 1.21736 0.78787 1.03244 1.01672 1.46295 1.05542 1.03235 1.78696 1.21803 0.97936 0.84749 1.01427 1.17707 0.90273 0.86189 0.89971 1.20490 1.00528 0.90580 1.12290 1.22336 0.92712 1.00644 0.90633 1.19698 0.94437 0.92329 1.16740 1.17547 0.86540 0.82377 0.76960 1.90806 1.13177 1.87048 1.50981 1.48028 1.07287 1.06011 1.72227 1.22441 0.80985 0.97776 1.00902 1.23224 0.97454 0.92572 1.01304 0.88917 1.21120 0.95496 0.89089 0.88323 1.44191 1.50202 1.30387 1.08062 1.19046 1.22229 1.06006 0.88297 0.90372 1.24779 0.99308 0.98255 0.98002 1.69935 1.31853 1.27990 1.27220 0.86113 0.77677 0.79353 0.82590 1.21630 1.21706 1.20697 1.21173 0.96441 0.92924 0.87639 1.22962 0.94410 0.96512 0.99186 0.89198 1.21985 0.95623 0.80442 1.01884 1.17314 0.77071 0.92503 0.94456 1.91574 1.28505 1.97223 1.92136 1.20470 0.93070 0.97431 1.17106 0.92856 0.91243 0.90589 0.90106 0.92466 0.92221 0.84800 0.80975 0.91274 0.89913 0.93649 0.93088 0.93787 0.94326 0.96171 0.90379 0.91518 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.33 59.85 0.62 1.11 16 2 N -0.63 -5.03 3.39 -187.57 -0.64 -5.67 16 3 C 0.08 0.48 10.62 59.85 0.64 1.12 16 4 C 0.26 2.79 6.54 -83.88 -0.55 2.25 16 5 C -0.22 -2.31 9.17 -39.80 -0.37 -2.68 16 6 C -0.05 -0.57 8.49 -39.59 -0.34 -0.91 16 7 C -0.23 -3.56 5.88 -104.89 -0.62 -4.18 16 8 C 0.58 10.84 7.78 -12.54 -0.10 10.75 16 9 O -0.54 -12.02 15.68 5.27 0.08 -11.94 16 10 N -0.60 -10.58 3.31 -179.41 -0.59 -11.18 16 11 C 0.10 1.52 4.27 -3.58 -0.02 1.50 16 12 C -0.13 -2.10 4.02 -88.60 -0.36 -2.46 16 13 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.18 4.17 4.75 -3.60 -0.02 4.16 16 15 N -0.60 -14.81 3.37 -171.93 -0.58 -15.39 16 16 C -0.23 -6.23 10.25 -15.06 -0.15 -6.39 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -26.36 10.25 55.49 0.57 -25.79 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.14 2.88 6.37 -3.43 -0.02 2.85 16 25 C -0.11 -1.84 4.19 -88.25 -0.37 -2.21 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 27 C 0.12 2.22 6.08 -3.29 -0.02 2.20 16 28 C 0.21 3.14 7.27 -38.98 -0.28 2.86 16 29 F -0.12 -1.99 15.58 2.25 0.04 -1.96 16 30 C -0.26 -3.04 9.28 -39.35 -0.37 -3.41 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 33 H 0.08 0.41 5.98 -51.94 -0.31 0.10 16 34 H 0.08 0.47 5.28 -51.93 -0.27 0.20 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.13 1.09 6.00 -52.49 -0.32 0.78 16 38 H 0.17 2.04 2.72 -60.11 -0.16 1.88 16 39 H 0.07 0.83 6.64 -51.93 -0.35 0.48 16 40 H 0.08 1.27 6.03 -51.93 -0.31 0.96 16 41 H 0.05 1.14 7.46 -51.93 -0.39 0.75 16 42 H 0.05 1.30 6.50 -51.93 -0.34 0.97 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.04 0.76 7.95 -51.93 -0.41 0.35 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 1.66 7.72 -51.93 -0.40 1.25 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.14 1.34 5.71 -52.49 -0.30 1.04 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -34.15 372.42 -9.43 -43.57 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.48 Total: -0.57 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.41 Total: 6.27 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -1.24 Total: -58.02 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.15 -9.43 -43.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048861311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.088 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds