Wall clock time and date at job start Wed Apr 1 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00018 * 2 1 4 4 C 1.39049 * 119.99584 * 180.02562 * 2 1 3 5 5 C 1.39296 * 119.91018 * 5.08874 * 4 2 1 6 6 C 1.36534 * 120.26790 * 179.97438 * 5 4 2 7 7 C 1.39852 * 120.07880 * 0.03783 * 6 5 4 8 8 C 1.47375 * 120.09116 * 179.97438 * 7 6 5 9 9 O 1.21613 * 119.99767 * 172.19104 * 8 7 6 10 10 N 1.34778 * 119.99957 * 352.19895 * 8 7 6 11 11 C 1.46663 * 125.34116 * 5.30682 * 10 8 7 12 12 C 1.53724 * 107.94400 * 180.54834 * 11 10 8 13 13 H 1.09001 * 112.55691 * 139.72400 * 12 11 10 14 14 C 1.53696 * 109.33725 * 266.25213 * 12 11 10 15 15 N 1.46647 * 108.00532 * 127.56090 * 14 12 11 16 16 C 1.36931 * 125.32697 * 180.81799 * 15 14 12 17 17 H 1.08000 * 119.99896 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00414 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99710 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00238 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46894 * 90.00110 * 20 18 16 22 22 H 1.48502 * 109.47263 * 210.00212 * 20 18 16 23 23 H 1.48503 * 109.46987 * 330.00629 * 20 18 16 24 24 C 1.46741 * 109.33906 * 0.83137 * 15 14 12 25 25 C 1.53926 * 106.72553 * 341.66358 * 24 15 14 26 26 H 1.09005 * 113.01705 * 150.83103 * 25 24 15 27 27 C 1.46776 * 125.33677 * 185.00853 * 10 8 7 28 28 C 1.40063 * 119.81828 * 359.97438 * 7 6 5 29 29 F 1.35095 * 120.13576 * 180.02562 * 28 7 6 30 30 C 1.38011 * 119.73320 * 0.26824 * 28 7 6 31 31 H 1.09006 * 109.46805 * 270.00050 * 1 2 3 32 32 H 1.08998 * 109.47299 * 29.99520 * 1 2 3 33 33 H 1.08989 * 109.47416 * 149.99779 * 1 2 3 34 34 H 1.08998 * 109.47213 * 174.97644 * 3 2 1 35 35 H 1.09001 * 109.47048 * 294.97414 * 3 2 1 36 36 H 1.09002 * 109.47190 * 54.96977 * 3 2 1 37 37 H 1.07999 * 119.87068 * 359.97438 * 5 4 2 38 38 H 1.08005 * 119.96116 * 180.02562 * 6 5 4 39 39 H 1.08994 * 109.77302 * 300.17513 * 11 10 8 40 40 H 1.09002 * 109.76913 * 60.92523 * 11 10 8 41 41 H 1.08999 * 109.76264 * 247.19539 * 14 12 11 42 42 H 1.08994 * 109.76569 * 7.91555 * 14 12 11 43 43 H 0.96995 * 120.00088 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.01031 * 222.34470 * 24 15 14 45 45 H 1.09006 * 110.00571 * 100.98168 * 24 15 14 46 46 H 1.09006 * 110.02652 * 280.77159 * 27 10 8 47 47 H 1.08997 * 110.03050 * 42.18332 * 27 10 8 48 48 H 1.07998 * 120.04069 * 179.70119 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2043 -0.0005 5 6 1.4659 -2.4070 -0.1082 6 6 2.1411 -3.5937 -0.1100 7 6 3.5355 -3.6069 -0.0028 8 6 4.2646 -4.8876 -0.0041 9 8 5.4797 -4.8955 -0.0542 10 7 3.5847 -6.0501 0.0500 11 6 2.1248 -6.1822 0.0024 12 6 1.7808 -7.6768 0.1066 13 1 0.9136 -7.8631 0.7401 14 6 1.6319 -8.2644 -1.3058 15 7 2.4924 -9.4483 -1.3972 16 6 2.6422 -10.2344 -2.5084 17 1 3.3012 -11.0896 -2.4800 18 6 1.9472 -9.9321 -3.6713 19 7 1.1445 -8.8896 -3.7061 20 14 2.1510 -11.0049 -5.1869 21 1 1.1415 -12.0937 -5.1620 22 1 1.9593 -10.1799 -6.4067 23 1 3.5142 -11.5939 -5.1967 24 6 3.1675 -9.6589 -0.1114 25 6 3.0791 -8.3288 0.6583 26 1 3.0674 -8.4624 1.7401 27 6 4.1896 -7.3830 0.1595 28 6 4.2371 -2.3995 0.1059 29 9 5.5841 -2.4048 0.2092 30 6 3.5465 -1.2047 0.1120 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8899 -0.5138 34 1 3.2658 1.0715 0.0900 35 1 2.0034 1.8003 -0.9316 36 1 1.8684 1.8783 0.8415 37 1 0.3890 -2.4010 -0.1905 38 1 1.5978 -4.5233 -0.1941 39 1 1.6784 -5.6419 0.8371 40 1 1.7490 -5.7820 -0.9393 41 1 0.5941 -8.5490 -1.4790 42 1 1.9402 -7.5266 -2.0464 43 1 0.6591 -8.6781 -4.5188 44 1 4.2115 -9.9251 -0.2775 45 1 2.6656 -10.4480 0.4485 46 1 4.5522 -7.7097 -0.8152 47 1 5.0108 -7.3626 0.8760 48 1 4.0821 -0.2711 0.2004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048861311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:15 Heat of formation + Delta-G solvation = 6.029048 kcal Electronic energy + Delta-G solvation = -31135.782085 eV Core-core repulsion = 26913.736439 eV Total energy + Delta-G solvation = -4222.045646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.94294 -41.83799 -40.51527 -39.44733 -37.10721 -36.57892 -34.20819 -32.43763 -31.78434 -31.58075 -30.65989 -29.01640 -27.58413 -27.23442 -26.33667 -24.69651 -23.46353 -22.48703 -21.75109 -21.07899 -20.86116 -18.93494 -18.55300 -18.33216 -17.76177 -17.28826 -16.87178 -16.68428 -16.64021 -16.47471 -15.94794 -15.86208 -15.69995 -15.52035 -14.95364 -14.75641 -14.54526 -14.26277 -14.04065 -13.67121 -13.56736 -13.46648 -13.33921 -13.23932 -13.20674 -13.08693 -12.98717 -12.84191 -12.68274 -12.62659 -12.05212 -11.98832 -11.85208 -11.51436 -11.41220 -11.33150 -11.00301 -10.90216 -10.64060 -9.96901 -9.66314 -8.83195 -8.40968 -7.83578 -5.16767 -0.14787 0.24351 1.45652 1.47170 1.55189 1.78996 1.94849 2.05620 2.50469 2.71938 3.23865 3.32348 3.34152 3.48230 3.60797 3.77186 3.85935 3.96863 3.98011 4.14490 4.22617 4.26166 4.33552 4.43572 4.44681 4.46864 4.55269 4.61158 4.74577 4.77981 4.79281 4.84393 4.91253 4.94057 4.95820 5.03230 5.04153 5.08730 5.11655 5.28666 5.30823 5.40227 5.49985 5.62045 5.71125 5.82368 6.16326 6.25353 6.30093 6.47773 7.08857 7.15589 7.83523 8.44050 9.26232 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.002839 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.016530 B = 9860.822115 C =10653.365348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.075 3.925 4 C 0.272 3.728 5 C -0.210 4.210 6 C -0.042 4.042 7 C -0.258 4.258 8 C 0.567 3.433 9 O -0.592 6.592 10 N -0.605 5.605 11 C 0.104 3.896 12 C -0.112 4.112 13 H 0.131 0.869 14 C 0.194 3.806 15 N -0.625 5.625 16 C -0.241 4.241 17 H 0.078 0.922 18 C -0.063 4.063 19 N -0.945 5.945 20 Si 0.973 3.027 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.138 3.862 25 C -0.091 4.091 26 H 0.136 0.864 27 C 0.123 3.877 28 C 0.183 3.817 29 F -0.138 7.138 30 C -0.255 4.255 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.181 0.819 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.015 0.985 42 H 0.010 0.990 43 H 0.246 0.754 44 H 0.033 0.967 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.073 0.927 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 20.805 13.025 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.329 5.329 3 C -0.067 4.067 4 C 0.163 3.837 5 C -0.232 4.232 6 C -0.060 4.060 7 C -0.264 4.264 8 C 0.360 3.640 9 O -0.474 6.474 10 N -0.336 5.336 11 C -0.018 4.018 12 C -0.131 4.131 13 H 0.149 0.851 14 C 0.069 3.931 15 N -0.351 5.351 16 C -0.371 4.371 17 H 0.096 0.904 18 C -0.256 4.256 19 N -0.594 5.594 20 Si 0.802 3.198 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.200 1.200 24 C 0.013 3.987 25 C -0.111 4.111 26 H 0.153 0.847 27 C 0.001 3.999 28 C 0.162 3.838 29 F -0.117 7.117 30 C -0.279 4.279 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.183 0.817 38 H 0.197 0.803 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.091 0.909 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.536 21.079 12.795 25.272 hybrid contribution 0.845 -0.768 -1.455 1.849 sum -4.691 20.312 11.340 23.731 Atomic orbital electron populations 1.21996 0.77016 1.04457 1.02823 1.46659 1.06800 1.02946 1.76535 1.22023 0.97737 0.84017 1.02967 1.17843 0.89938 0.87458 0.88431 1.20795 1.01958 0.89706 1.10767 1.22349 0.91272 1.01896 0.90471 1.19590 0.95659 0.90826 1.20303 1.18159 0.86270 0.83617 0.76001 1.90756 1.15324 1.87831 1.53518 1.48115 1.08391 1.05435 1.71705 1.22595 0.79578 0.97027 1.02552 1.23162 0.98983 0.93192 0.97803 0.85071 1.20875 0.93174 0.87719 0.91334 1.44503 1.50980 1.30608 1.09035 1.19390 1.21728 1.06285 0.89659 0.90419 1.25547 0.99681 0.99734 1.00648 1.70144 1.32641 1.29283 1.27315 0.85164 0.77835 0.77791 0.79060 1.20953 1.22260 1.20038 1.21370 0.95743 0.95292 0.86322 1.22959 0.93287 0.93779 1.01046 0.84660 1.21863 0.96789 0.81499 0.99785 1.17684 0.76408 0.93668 0.96058 1.91509 1.30184 1.97375 1.92596 1.20633 0.93810 0.96928 1.16506 0.91645 0.89343 0.90195 0.90387 0.91156 0.90311 0.81703 0.80283 0.86680 0.90554 0.96693 0.97141 0.94474 0.94911 0.94592 0.94781 0.90898 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.33 127.77 1.32 1.85 16 2 N -0.62 -7.60 3.39 -747.36 -2.53 -10.13 16 3 C 0.07 0.60 10.62 127.77 1.36 1.95 16 4 C 0.27 5.00 6.54 38.45 0.25 5.25 16 5 C -0.21 -3.84 9.17 22.13 0.20 -3.64 16 6 C -0.04 -0.99 8.49 22.26 0.19 -0.80 16 7 C -0.26 -8.19 5.88 -20.04 -0.12 -8.31 16 8 C 0.57 22.15 7.78 86.65 0.67 22.83 16 9 O -0.59 -27.92 15.68 -4.07 -0.06 -27.98 16 10 N -0.61 -21.40 3.31 -839.77 -2.78 -24.18 16 11 C 0.10 2.95 4.27 86.59 0.37 3.32 16 12 C -0.11 -3.53 4.02 -9.49 -0.04 -3.57 16 13 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 14 C 0.19 8.95 4.75 86.59 0.41 9.36 16 15 N -0.62 -31.41 3.37 -697.85 -2.35 -33.76 16 16 C -0.24 -13.58 10.25 84.04 0.86 -12.72 16 17 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 18 C -0.06 -3.58 5.48 84.86 0.47 -3.11 16 19 N -0.94 -55.90 10.25 21.65 0.22 -55.67 16 20 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 C 0.14 5.42 6.37 86.65 0.55 5.97 16 25 C -0.09 -2.86 4.19 -9.26 -0.04 -2.89 16 26 H 0.14 3.15 8.14 -2.38 -0.02 3.13 16 27 C 0.12 4.53 6.08 86.72 0.53 5.06 16 28 C 0.18 5.63 7.27 22.66 0.16 5.79 16 29 F -0.14 -5.00 15.58 44.97 0.70 -4.30 16 30 C -0.26 -5.71 9.28 22.42 0.21 -5.50 16 31 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 33 H 0.08 0.51 5.98 -2.39 -0.01 0.49 16 34 H 0.08 0.69 5.28 -2.39 -0.01 0.68 16 35 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.17 1.95 6.00 -2.91 -0.02 1.93 16 38 H 0.18 3.86 2.72 -10.08 -0.03 3.83 16 39 H 0.12 2.31 6.64 -2.39 -0.02 2.29 16 40 H 0.08 2.31 6.03 -2.39 -0.01 2.30 16 41 H 0.01 0.77 7.46 -2.39 -0.02 0.75 16 42 H 0.01 0.56 6.50 -2.39 -0.02 0.54 16 43 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.03 1.31 7.95 -2.38 -0.02 1.29 16 45 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.03 1.53 7.72 -2.38 -0.02 1.52 16 47 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 48 H 0.16 2.79 5.71 -2.91 -0.02 2.77 16 Total: -1.00 -80.61 372.42 3.56 -77.05 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.98 Total: 9.75 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 7.36 Total: 20.85 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -7.45 Total: -123.75 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.06 Total: -27.98 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.70 Total: -4.30 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -80.61 3.56 -77.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048861311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.077 kcal (2) G-P(sol) polarization free energy of solvation -80.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds