Wall clock time and date at job start Wed Apr 1 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00086 * 2 1 4 4 C 1.38501 * 119.99699 * 179.97438 * 2 1 3 5 5 C 1.39605 * 120.05427 * 4.72270 * 4 2 1 6 6 C 1.38284 * 118.02916 * 179.78241 * 5 4 2 7 7 C 1.40072 * 117.99285 * 0.48435 * 6 5 4 8 8 C 1.47858 * 120.09428 * 179.72810 * 7 6 5 9 9 O 1.21558 * 119.99856 * 350.72364 * 8 7 6 10 10 N 1.34775 * 120.00113 * 170.72201 * 8 7 6 11 11 C 1.47125 * 121.05295 * 178.99626 * 10 8 7 12 12 C 1.53231 * 108.72718 * 127.77412 * 11 10 8 13 13 O 1.43109 * 109.34416 * 54.12425 * 12 11 10 14 14 C 1.42492 * 113.97859 * 300.04198 * 13 12 11 15 15 C 1.53459 * 113.76917 * 286.79950 * 14 13 12 16 16 N 1.47668 * 85.96879 * 268.71589 * 15 14 13 17 17 C 1.36942 * 134.45617 * 155.74912 * 16 15 14 18 18 H 1.08000 * 120.00014 * 179.97438 * 17 16 15 19 19 C 1.38817 * 119.99741 * 359.94462 * 17 16 15 20 20 N 1.31617 * 120.00227 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47147 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47146 * 119.99848 * 21 19 17 24 24 H 1.48497 * 109.47435 * 240.00374 * 21 19 17 25 25 C 1.47668 * 91.08836 * 335.70736 * 16 15 14 26 26 C 1.47338 * 121.05130 * 358.70913 * 10 8 7 27 27 N 1.32755 * 119.80829 * 359.74740 * 7 6 5 28 28 N 1.28352 * 122.10766 * 0.02562 * 27 7 6 29 29 H 1.09000 * 109.47336 * 90.00208 * 1 2 3 30 30 H 1.08999 * 109.47070 * 329.99941 * 1 2 3 31 31 H 1.09004 * 109.47135 * 210.00008 * 1 2 3 32 32 H 1.08998 * 109.47180 * 89.99460 * 3 2 1 33 33 H 1.08997 * 109.47045 * 210.00285 * 3 2 1 34 34 H 1.09003 * 109.46480 * 329.99862 * 3 2 1 35 35 H 1.07999 * 120.98000 * 0.02562 * 5 4 2 36 36 H 1.07996 * 121.00211 * 180.21721 * 6 5 4 37 37 H 1.09008 * 109.59225 * 247.54287 * 11 10 8 38 38 H 1.08994 * 109.59860 * 8.00139 * 11 10 8 39 39 H 1.08998 * 109.48954 * 174.08104 * 12 11 10 40 40 H 1.09001 * 109.48774 * 294.13642 * 12 11 10 41 41 H 1.09003 * 113.79409 * 22.97857 * 15 14 13 42 42 H 1.09001 * 113.79740 * 154.45254 * 15 14 13 43 43 H 0.96997 * 120.00254 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.79507 * 270.03139 * 25 16 15 45 45 H 1.09007 * 113.89796 * 138.57220 * 25 16 15 46 46 H 1.08998 * 109.75152 * 348.03631 * 26 10 8 47 47 H 1.09004 * 109.74399 * 108.76018 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1575 -1.1995 0.0005 5 6 1.4641 -2.4071 -0.0984 6 6 2.1975 -3.5794 -0.0985 7 6 3.5906 -3.4834 0.0112 8 6 4.4196 -4.7077 0.0220 9 8 3.8908 -5.7990 0.1058 10 7 5.7615 -4.6136 -0.0612 11 6 6.6098 -5.8153 -0.0305 12 6 7.5524 -5.7830 -1.2382 13 8 8.2704 -4.5451 -1.2462 14 6 7.4367 -3.3926 -1.3292 15 6 6.8138 -3.1784 -2.7152 16 7 8.0031 -2.3534 -3.0073 17 6 8.6555 -1.9828 -4.1529 18 1 9.5307 -1.3526 -4.0962 19 6 8.1923 -2.4178 -5.3871 20 7 7.1257 -3.1859 -5.4563 21 14 9.0826 -1.9130 -6.9497 22 1 10.2437 -1.0546 -6.6026 23 1 9.5595 -3.1258 -7.6615 24 1 8.1528 -1.1575 -7.8272 25 6 8.2065 -2.0871 -1.5692 26 6 6.4250 -3.3046 -0.1921 27 7 4.1644 -2.2900 0.1058 28 7 3.4823 -1.2028 0.1012 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 2.3791 1.5834 1.0276 33 1 3.1499 1.1384 -0.5139 34 1 1.6084 2.0283 -0.5139 35 1 0.3871 -2.4250 -0.1766 36 1 1.7105 -4.5402 -0.1763 37 1 7.1946 -5.8265 0.8894 38 1 5.9838 -6.7061 -0.0793 39 1 8.2572 -6.6118 -1.1716 40 1 6.9710 -5.8727 -2.1558 41 1 6.7509 -4.0869 -3.3143 42 1 5.8813 -2.6143 -2.6959 43 1 6.8018 -3.4895 -6.3186 44 1 7.6883 -1.1985 -1.2088 45 1 9.2497 -2.1279 -1.2557 46 1 5.6845 -2.5373 -0.4179 47 1 6.9399 -3.0583 0.7365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053511041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:40 Heat of formation + Delta-G solvation = 94.049708 kcal Electronic energy + Delta-G solvation = -31811.196977 eV Core-core repulsion = 27612.888155 eV Total energy + Delta-G solvation = -4198.308822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.37667 -40.02182 -38.62278 -37.32083 -35.97534 -34.50496 -33.23490 -32.24297 -31.80191 -29.79690 -28.80801 -27.93709 -26.33678 -25.85904 -24.96078 -24.58776 -23.40924 -22.42859 -21.71999 -20.00491 -18.74186 -18.09580 -17.71469 -17.09998 -16.70175 -16.19071 -16.03935 -15.48438 -15.20800 -14.95604 -14.92719 -14.64645 -14.37377 -14.24620 -14.05436 -13.83166 -13.47052 -13.20538 -13.14112 -12.96825 -12.76564 -12.64603 -12.30103 -12.23843 -12.20956 -11.37678 -11.09093 -11.01133 -10.85777 -10.81543 -10.63418 -10.54096 -10.35536 -10.22170 -9.94887 -9.76256 -9.51749 -9.22996 -9.11032 -8.75813 -8.23209 -8.05095 -6.79107 -5.68231 -2.99738 0.58041 0.73413 2.42251 2.73985 2.99251 3.43896 3.48848 3.51660 3.66528 3.93997 4.24487 4.28362 4.39232 4.47904 4.51722 4.67685 4.78913 4.90685 5.00792 5.12952 5.19324 5.26893 5.31910 5.32225 5.39092 5.42458 5.47517 5.59592 5.60922 5.66858 5.69452 5.79799 5.92917 6.06437 6.22729 6.40410 6.45757 6.58671 6.61647 6.63071 6.70524 6.81783 7.09622 7.28415 7.48689 7.59238 7.95713 8.05932 8.14665 8.59606 9.11967 9.78757 10.66739 11.49068 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009425 B = 0.003873 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.244903 B = 7228.491968 C = 9085.033908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.601 5.601 3 C 0.093 3.907 4 C 0.354 3.646 5 C -0.187 4.187 6 C -0.022 4.022 7 C -0.027 4.027 8 C 0.584 3.416 9 O -0.546 6.546 10 N -0.586 5.586 11 C 0.077 3.923 12 C 0.049 3.951 13 O -0.345 6.345 14 C 0.049 3.951 15 C 0.153 3.847 16 N -0.603 5.603 17 C -0.214 4.214 18 H 0.081 0.919 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.137 3.863 26 C 0.059 3.941 27 N -0.154 5.154 28 N -0.303 5.303 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.251 0.749 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.155 0.845 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.661 3.103 15.146 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.314 5.314 3 C -0.050 4.050 4 C 0.114 3.886 5 C -0.220 4.220 6 C -0.050 4.050 7 C -0.177 4.177 8 C 0.370 3.630 9 O -0.424 6.424 10 N -0.317 5.317 11 C -0.045 4.045 12 C -0.029 4.029 13 O -0.262 6.262 14 C 0.007 3.993 15 C 0.027 3.973 16 N -0.329 5.329 17 C -0.342 4.342 18 H 0.099 0.901 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.011 3.989 26 C -0.064 4.064 27 N 0.000 5.000 28 N -0.156 5.156 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.170 0.830 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.417 3.613 14.992 20.441 hybrid contribution -1.192 -0.481 -1.156 1.729 sum -14.609 3.131 13.836 20.364 Atomic orbital electron populations 1.21831 0.77986 1.03413 1.02170 1.46119 1.05464 1.03082 1.76760 1.21739 0.97914 0.83308 1.01995 1.20113 0.91393 0.87002 0.90091 1.21790 1.01966 0.91046 1.07224 1.22091 0.92640 1.00046 0.90265 1.22422 0.93578 0.94248 1.07439 1.17441 0.81683 0.86980 0.76877 1.90751 1.72275 1.27255 1.52091 1.47990 1.04896 1.08905 1.69943 1.22368 0.93640 0.88684 0.99818 1.22859 0.95378 0.87912 0.96744 1.87909 1.31738 1.12537 1.94064 1.23618 0.92164 0.88136 0.95364 1.22638 0.89631 0.95875 0.89162 1.45777 1.29261 1.58067 0.99797 1.19060 1.06859 1.25522 0.82761 0.90084 1.24752 0.98035 1.00446 0.97319 1.69833 1.24855 1.38968 1.23446 0.86055 0.78644 0.77665 0.83480 1.20425 1.21789 1.21914 1.22485 0.98189 0.91768 0.86474 1.23591 0.98151 0.85577 0.99114 1.72850 1.27737 0.94696 1.04766 1.73212 1.03604 1.20068 1.18726 0.92240 0.90416 0.90928 0.92669 0.89689 0.91236 0.83007 0.82188 0.90660 0.88350 0.88153 0.92202 0.90780 0.95439 0.93879 0.92994 0.92720 0.82962 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 10.08 59.85 0.60 1.05 16 2 N -0.60 -5.43 3.38 -189.54 -0.64 -6.07 16 3 C 0.09 0.75 10.42 59.85 0.62 1.38 16 4 C 0.35 4.23 7.44 -154.93 -1.15 3.07 16 5 C -0.19 -1.91 9.25 -39.05 -0.36 -2.27 16 6 C -0.02 -0.27 9.71 -38.88 -0.38 -0.64 16 7 C -0.03 -0.41 6.71 -82.84 -0.56 -0.97 16 8 C 0.58 9.92 7.69 -12.32 -0.09 9.83 16 9 O -0.55 -9.92 15.88 5.31 0.08 -9.83 16 10 N -0.59 -9.89 3.03 -173.80 -0.53 -10.41 16 11 C 0.08 1.17 6.60 -3.58 -0.02 1.15 16 12 C 0.05 0.83 6.88 37.28 0.26 1.09 16 13 O -0.34 -7.13 10.52 -35.23 -0.37 -7.50 16 14 C 0.05 1.01 1.21 -90.53 -0.11 0.90 16 15 C 0.15 3.84 6.64 -3.17 -0.02 3.82 16 16 N -0.60 -16.28 3.70 -180.36 -0.67 -16.95 16 17 C -0.21 -6.26 10.70 -15.06 -0.16 -6.42 16 18 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.92 -28.42 11.39 55.49 0.63 -27.78 16 21 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 C 0.14 2.99 8.33 -3.18 -0.03 2.96 16 26 C 0.06 1.04 5.27 -3.86 -0.02 1.02 16 27 N -0.15 -2.46 7.22 33.32 0.24 -2.22 16 28 N -0.30 -4.49 10.34 31.21 0.32 -4.17 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 31 H 0.07 0.29 6.40 -51.93 -0.33 -0.04 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.87 7.46 -51.93 -0.39 0.48 16 34 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 35 H 0.15 0.98 6.35 -52.49 -0.33 0.64 16 36 H 0.16 1.67 7.74 -52.49 -0.41 1.27 16 37 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 38 H 0.10 1.43 7.06 -51.93 -0.37 1.06 16 39 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.06 1.14 7.20 -51.93 -0.37 0.77 16 41 H 0.07 2.09 6.31 -51.93 -0.33 1.76 16 42 H 0.03 0.72 7.92 -51.93 -0.41 0.31 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.15 2.76 3.72 -142.59 -0.53 2.23 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -36.71 378.14 -8.58 -45.29 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.81 Total: 0.54 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: -1.52 Total: 15.59 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.64 Total: -67.61 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.29 Total: -17.34 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.71 -8.58 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053511041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.336 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds