Wall clock time and date at job start Wed Apr 1 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00086 * 2 1 4 4 C 1.38501 * 119.99699 * 179.97438 * 2 1 3 5 5 C 1.39605 * 120.05427 * 4.72270 * 4 2 1 6 6 C 1.38284 * 118.02916 * 179.78241 * 5 4 2 7 7 C 1.40072 * 117.99285 * 0.48435 * 6 5 4 8 8 C 1.47858 * 120.09428 * 179.72810 * 7 6 5 9 9 O 1.21558 * 119.99856 * 350.72364 * 8 7 6 10 10 N 1.34775 * 120.00113 * 170.72201 * 8 7 6 11 11 C 1.47125 * 121.05295 * 178.99626 * 10 8 7 12 12 C 1.53231 * 108.72718 * 127.77412 * 11 10 8 13 13 O 1.43109 * 109.34416 * 54.12425 * 12 11 10 14 14 C 1.42492 * 113.97859 * 300.04198 * 13 12 11 15 15 C 1.53459 * 113.76917 * 286.79950 * 14 13 12 16 16 N 1.47668 * 85.96879 * 268.71589 * 15 14 13 17 17 C 1.36942 * 134.45617 * 155.74912 * 16 15 14 18 18 H 1.08000 * 120.00014 * 179.97438 * 17 16 15 19 19 C 1.38817 * 119.99741 * 359.94462 * 17 16 15 20 20 N 1.31617 * 120.00227 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47147 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47146 * 119.99848 * 21 19 17 24 24 H 1.48497 * 109.47435 * 240.00374 * 21 19 17 25 25 C 1.47668 * 91.08836 * 335.70736 * 16 15 14 26 26 C 1.47338 * 121.05130 * 358.70913 * 10 8 7 27 27 N 1.32755 * 119.80829 * 359.74740 * 7 6 5 28 28 N 1.28352 * 122.10766 * 0.02562 * 27 7 6 29 29 H 1.09000 * 109.47336 * 90.00208 * 1 2 3 30 30 H 1.08999 * 109.47070 * 329.99941 * 1 2 3 31 31 H 1.09004 * 109.47135 * 210.00008 * 1 2 3 32 32 H 1.08998 * 109.47180 * 89.99460 * 3 2 1 33 33 H 1.08997 * 109.47045 * 210.00285 * 3 2 1 34 34 H 1.09003 * 109.46480 * 329.99862 * 3 2 1 35 35 H 1.07999 * 120.98000 * 0.02562 * 5 4 2 36 36 H 1.07996 * 121.00211 * 180.21721 * 6 5 4 37 37 H 1.09008 * 109.59225 * 247.54287 * 11 10 8 38 38 H 1.08994 * 109.59860 * 8.00139 * 11 10 8 39 39 H 1.08998 * 109.48954 * 174.08104 * 12 11 10 40 40 H 1.09001 * 109.48774 * 294.13642 * 12 11 10 41 41 H 1.09003 * 113.79409 * 22.97857 * 15 14 13 42 42 H 1.09001 * 113.79740 * 154.45254 * 15 14 13 43 43 H 0.96997 * 120.00254 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.79507 * 270.03139 * 25 16 15 45 45 H 1.09007 * 113.89796 * 138.57220 * 25 16 15 46 46 H 1.08998 * 109.75152 * 348.03631 * 26 10 8 47 47 H 1.09004 * 109.74399 * 108.76018 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1575 -1.1995 0.0005 5 6 1.4641 -2.4071 -0.0984 6 6 2.1975 -3.5794 -0.0985 7 6 3.5906 -3.4834 0.0112 8 6 4.4196 -4.7077 0.0220 9 8 3.8908 -5.7990 0.1058 10 7 5.7615 -4.6136 -0.0612 11 6 6.6098 -5.8153 -0.0305 12 6 7.5524 -5.7830 -1.2382 13 8 8.2704 -4.5451 -1.2462 14 6 7.4367 -3.3926 -1.3292 15 6 6.8138 -3.1784 -2.7152 16 7 8.0031 -2.3534 -3.0073 17 6 8.6555 -1.9828 -4.1529 18 1 9.5307 -1.3526 -4.0962 19 6 8.1923 -2.4178 -5.3871 20 7 7.1257 -3.1859 -5.4563 21 14 9.0826 -1.9130 -6.9497 22 1 10.2437 -1.0546 -6.6026 23 1 9.5595 -3.1258 -7.6615 24 1 8.1528 -1.1575 -7.8272 25 6 8.2065 -2.0871 -1.5692 26 6 6.4250 -3.3046 -0.1921 27 7 4.1644 -2.2900 0.1058 28 7 3.4823 -1.2028 0.1012 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 2.3791 1.5834 1.0276 33 1 3.1499 1.1384 -0.5139 34 1 1.6084 2.0283 -0.5139 35 1 0.3871 -2.4250 -0.1766 36 1 1.7105 -4.5402 -0.1763 37 1 7.1946 -5.8265 0.8894 38 1 5.9838 -6.7061 -0.0793 39 1 8.2572 -6.6118 -1.1716 40 1 6.9710 -5.8727 -2.1558 41 1 6.7509 -4.0869 -3.3143 42 1 5.8813 -2.6143 -2.6959 43 1 6.8018 -3.4895 -6.3186 44 1 7.6883 -1.1985 -1.2088 45 1 9.2497 -2.1279 -1.2557 46 1 5.6845 -2.5373 -0.4179 47 1 6.9399 -3.0583 0.7365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053511041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:33 Heat of formation + Delta-G solvation = 67.857964 kcal Electronic energy + Delta-G solvation = -31812.332736 eV Core-core repulsion = 27612.888155 eV Total energy + Delta-G solvation = -4199.444581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.44002 -41.41779 -40.07210 -38.12938 -37.65262 -35.90266 -34.28571 -34.18242 -32.88690 -31.33900 -29.59734 -29.34174 -27.79972 -27.12347 -26.79099 -25.57398 -24.71948 -23.84081 -23.03328 -21.35248 -20.35097 -19.21443 -18.83481 -18.55451 -18.13742 -17.54708 -17.16400 -17.03710 -16.63823 -16.33547 -15.99514 -15.78321 -15.71485 -15.54544 -15.27148 -15.09686 -14.87900 -14.75855 -14.47558 -14.23348 -13.95399 -13.57615 -13.42466 -13.29991 -13.16273 -12.91669 -12.88198 -12.79358 -12.58728 -12.20266 -12.05320 -11.90332 -11.75385 -11.66901 -11.49302 -11.30763 -10.99528 -10.92714 -10.81404 -10.41090 -9.58756 -8.94817 -8.91123 -7.90765 -5.24848 -0.43211 -0.18316 1.42791 1.45048 1.55362 1.55912 1.66471 1.82916 2.45667 2.59416 2.68170 2.88295 3.28216 3.34706 3.40462 3.50640 3.63123 3.72710 3.81014 3.84766 3.98244 4.18573 4.24112 4.32118 4.40463 4.49546 4.52637 4.59341 4.65368 4.71828 4.71975 4.77461 4.79539 4.83787 4.85379 4.92713 4.95171 4.98585 5.10939 5.12938 5.25639 5.44849 5.46045 5.88586 5.92620 6.00203 6.17300 6.35562 6.86205 6.88714 7.58700 7.59480 8.52913 9.26330 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009425 B = 0.003873 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.244903 B = 7228.491968 C = 9085.033908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.089 3.911 4 C 0.344 3.656 5 C -0.169 4.169 6 C -0.029 4.029 7 C -0.053 4.053 8 C 0.581 3.419 9 O -0.564 6.564 10 N -0.594 5.594 11 C 0.082 3.918 12 C 0.047 3.953 13 O -0.363 6.363 14 C 0.072 3.928 15 C 0.157 3.843 16 N -0.633 5.633 17 C -0.229 4.229 18 H 0.088 0.912 19 C -0.070 4.070 20 N -0.958 5.958 21 Si 0.981 3.019 22 H -0.261 1.261 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.137 3.863 26 C 0.071 3.929 27 N -0.175 5.175 28 N -0.334 5.334 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.195 0.805 36 H 0.175 0.825 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.028 0.972 41 H 0.034 0.966 42 H 0.010 0.990 43 H 0.246 0.754 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.152 0.848 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.878 4.123 16.469 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.308 5.308 3 C -0.053 4.053 4 C 0.102 3.898 5 C -0.201 4.201 6 C -0.057 4.057 7 C -0.204 4.204 8 C 0.369 3.631 9 O -0.443 6.443 10 N -0.325 5.325 11 C -0.040 4.040 12 C -0.030 4.030 13 O -0.282 6.282 14 C 0.030 3.970 15 C 0.031 3.969 16 N -0.359 5.359 17 C -0.357 4.357 18 H 0.106 0.894 19 C -0.262 4.262 20 N -0.608 5.608 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.220 1.220 24 H -0.219 1.219 25 C 0.012 3.988 26 C -0.053 4.053 27 N -0.021 5.021 28 N -0.188 5.188 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.212 0.788 36 H 0.193 0.807 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.151 0.849 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.168 0.832 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.648 4.674 16.355 22.448 hybrid contribution -0.927 -0.700 -1.544 1.932 sum -15.575 3.974 14.811 21.857 Atomic orbital electron populations 1.22173 0.75276 1.05394 1.03386 1.46525 1.07091 1.02288 1.74859 1.21819 0.97333 0.83647 1.02542 1.20450 0.90909 0.88829 0.89576 1.22184 1.03745 0.89433 1.04783 1.22305 0.91535 1.01564 0.90311 1.22383 0.94830 0.93555 1.09651 1.17728 0.81714 0.87467 0.76218 1.90720 1.72507 1.28016 1.53048 1.48086 1.05269 1.09046 1.70056 1.22424 0.93330 0.88451 0.99768 1.23052 0.96168 0.87341 0.96398 1.87863 1.32751 1.13527 1.94033 1.23250 0.91851 0.87972 0.93901 1.22444 0.88933 0.93754 0.91786 1.46165 1.29709 1.58677 1.01367 1.19508 1.07170 1.25062 0.83999 0.89438 1.25659 0.99082 1.00858 1.00647 1.70054 1.26607 1.40443 1.23686 0.84962 0.77848 0.77217 0.79036 1.18553 1.21996 1.21876 1.22689 0.99278 0.93184 0.83605 1.23438 0.97266 0.86152 0.98413 1.72630 1.28807 0.95052 1.05596 1.73083 1.05438 1.19667 1.20589 0.91274 0.88168 0.89364 0.91839 0.92403 0.88515 0.78772 0.80724 0.88013 0.87675 0.84949 0.95345 0.94764 0.97237 0.94510 0.90835 0.91658 0.83223 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.08 127.77 1.29 1.79 16 2 N -0.60 -9.43 3.38 -753.58 -2.54 -11.97 16 3 C 0.09 1.31 10.42 127.77 1.33 2.64 16 4 C 0.34 7.77 7.44 133.21 0.99 8.76 16 5 C -0.17 -3.08 9.25 22.61 0.21 -2.87 16 6 C -0.03 -0.69 9.71 22.73 0.22 -0.47 16 7 C -0.05 -1.65 6.71 42.00 0.28 -1.37 16 8 C 0.58 19.96 7.69 86.79 0.67 20.62 16 9 O -0.56 -20.55 15.88 -3.90 -0.06 -20.61 16 10 N -0.59 -20.03 3.03 -822.06 -2.49 -22.53 16 11 C 0.08 2.42 6.60 86.34 0.57 2.99 16 12 C 0.05 1.62 6.88 72.06 0.50 2.12 16 13 O -0.36 -15.09 10.52 -148.98 -1.57 -16.66 16 14 C 0.07 3.02 1.21 -10.64 -0.01 3.01 16 15 C 0.16 8.27 6.64 86.30 0.57 8.85 16 16 N -0.63 -35.07 3.70 -729.44 -2.70 -37.78 16 17 C -0.23 -13.63 10.70 84.03 0.90 -12.73 16 18 H 0.09 4.93 7.83 -2.91 -0.02 4.90 16 19 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 20 N -0.96 -61.35 11.39 21.65 0.25 -61.10 16 21 Si 0.98 47.85 29.55 68.60 2.03 49.88 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 C 0.14 5.99 8.33 86.30 0.72 6.71 16 26 C 0.07 2.48 5.27 86.04 0.45 2.93 16 27 N -0.17 -5.67 7.22 -48.50 -0.35 -6.02 16 28 N -0.33 -9.93 10.34 -55.16 -0.57 -10.50 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.10 0.25 8.07 -2.39 -0.02 0.23 16 31 H 0.09 0.32 6.40 -2.39 -0.02 0.30 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.19 7.46 -2.39 -0.02 1.17 16 34 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 35 H 0.20 1.71 6.35 -2.91 -0.02 1.69 16 36 H 0.18 3.45 7.74 -2.91 -0.02 3.43 16 37 H 0.10 2.49 8.14 -2.38 -0.02 2.48 16 38 H 0.11 2.98 7.06 -2.39 -0.02 2.96 16 39 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 41 H 0.03 2.06 6.31 -2.39 -0.02 2.04 16 42 H 0.01 0.55 7.92 -2.39 -0.02 0.53 16 43 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.07 2.91 8.09 -2.39 -0.02 2.89 16 45 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 46 H 0.15 5.54 3.72 -119.65 -0.45 5.09 16 47 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -83.45 378.14 1.71 -81.75 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.57 Total: 16.30 kcal Atomic # 6 Polarization: 30.09 SS G_CDS: 9.15 Total: 39.24 kcal Atomic # 7 Polarization: -141.48 SS G_CDS: -8.41 Total: -149.89 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.63 Total: -37.27 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -83.45 1.71 -81.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053511041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.607 kcal (2) G-P(sol) polarization free energy of solvation -83.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds