Wall clock time and date at job start Wed Apr 1 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00560 * 2 1 4 4 C 1.38513 * 120.00010 * 179.97438 * 2 1 3 5 5 C 1.39606 * 120.04418 * 4.72318 * 4 2 1 6 6 C 1.38283 * 118.02483 * 179.77858 * 5 4 2 7 7 C 1.40066 * 117.99598 * 0.49059 * 6 5 4 8 8 C 1.47861 * 120.09958 * 179.72572 * 7 6 5 9 9 O 1.21552 * 119.99652 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00239 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00354 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.97338 * 322.30060 * 11 10 8 13 13 C 1.55004 * 111.11017 * 86.45331 * 11 10 8 14 14 O 1.43863 * 105.17545 * 154.03580 * 13 11 10 15 15 C 1.42531 * 109.62522 * 335.69839 * 14 13 11 16 16 C 1.53262 * 115.54372 * 231.51201 * 15 14 13 17 17 N 1.47712 * 85.91453 * 219.83691 * 16 15 14 18 18 C 1.36934 * 134.43719 * 204.13613 * 17 16 15 19 19 H 1.08000 * 120.00097 * 173.53146 * 18 17 16 20 20 C 1.38817 * 120.00093 * 353.53195 * 18 17 16 21 21 N 1.31615 * 119.99824 * 5.07885 * 20 18 17 22 22 Si 1.86805 * 119.99809 * 185.08263 * 20 18 17 23 23 H 1.48503 * 109.47018 * 94.98577 * 22 20 18 24 24 H 1.48499 * 109.46754 * 214.98162 * 22 20 18 25 25 H 1.48500 * 109.47095 * 334.98400 * 22 20 18 26 26 C 1.47703 * 91.12538 * 24.15431 * 17 16 15 27 27 C 1.53767 * 108.37935 * 1.86172 * 15 14 13 28 28 N 1.32763 * 119.80642 * 359.74567 * 7 6 5 29 29 N 1.28361 * 122.10346 * 0.02562 * 28 7 6 30 30 H 1.09006 * 109.46903 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47330 * 240.00689 * 1 2 3 32 32 H 1.08996 * 109.47378 * 120.00461 * 1 2 3 33 33 H 1.08997 * 109.47285 * 89.98960 * 3 2 1 34 34 H 1.08996 * 109.47092 * 209.99851 * 3 2 1 35 35 H 1.09008 * 109.46496 * 329.99778 * 3 2 1 36 36 H 1.08003 * 120.98631 * 0.02562 * 5 4 2 37 37 H 1.08009 * 121.00152 * 180.21905 * 6 5 4 38 38 H 0.97003 * 119.99917 * 359.97438 * 10 8 7 39 39 H 1.09004 * 110.30646 * 272.96059 * 13 11 10 40 40 H 1.09000 * 110.30346 * 35.00836 * 13 11 10 41 41 H 1.08995 * 113.80592 * 334.08516 * 16 15 14 42 42 H 1.09003 * 113.79961 * 105.58952 * 16 15 14 43 43 H 0.96998 * 119.99665 * 180.02562 * 21 20 18 44 44 H 1.08994 * 113.80786 * 221.60012 * 26 17 16 45 45 H 1.09004 * 113.90943 * 90.10649 * 26 17 16 46 46 H 1.09001 * 110.92587 * 262.78969 * 27 15 14 47 47 H 1.09003 * 110.92272 * 139.14137 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1575 -1.1996 0.0005 5 6 1.4640 -2.4071 -0.0984 6 6 2.1973 -3.5795 -0.0986 7 6 3.5904 -3.4836 0.0111 8 6 4.4194 -4.7079 0.0219 9 8 3.8921 -5.7996 -0.0651 10 7 5.7596 -4.6133 0.1280 11 6 6.5810 -5.8263 0.1392 12 1 6.0884 -6.6259 0.6926 13 6 6.9298 -6.2777 -1.3020 14 8 8.1594 -7.0142 -1.1788 15 6 8.8537 -6.5940 -0.0071 16 6 10.3198 -6.1979 -0.2139 17 7 10.5766 -6.8866 1.0674 18 6 11.5454 -6.7901 2.0303 19 1 11.4516 -7.3505 2.9487 20 6 12.6480 -5.9719 1.8260 21 7 12.7144 -5.2128 0.7528 22 14 14.0377 -5.9484 3.0742 23 1 15.1025 -6.8913 2.6473 24 1 14.5986 -4.5763 3.1646 25 1 13.5166 -6.3587 4.4029 26 6 9.3704 -7.7212 0.8940 27 6 7.9973 -5.5383 0.7116 28 7 4.1643 -2.2901 0.1058 29 7 3.4821 -1.2028 0.1013 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3634 -0.5137 0.8901 32 1 -0.3634 -0.5139 -0.8899 33 1 2.3791 1.5834 1.0276 34 1 3.1499 1.1382 -0.5138 35 1 1.6085 2.0283 -0.5139 36 1 0.3869 -2.4249 -0.1766 37 1 1.7103 -4.5403 -0.1765 38 1 6.1804 -3.7421 0.1970 39 1 6.1428 -6.9193 -1.6984 40 1 7.0699 -5.4099 -1.9466 41 1 10.7882 -6.6781 -1.0730 42 1 10.4941 -5.1225 -0.1780 43 1 13.4851 -4.6414 0.6099 44 1 8.7919 -7.8538 1.8082 45 1 9.5531 -8.6574 0.3663 46 1 8.3238 -4.5308 0.4537 47 1 8.0189 -5.6887 1.7910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053985519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:52 Heat of formation + Delta-G solvation = 36.275345 kcal Electronic energy + Delta-G solvation = -29807.646936 eV Core-core repulsion = 25606.832830 eV Total energy + Delta-G solvation = -4200.814106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.24023 -41.51933 -40.28797 -38.11299 -37.87127 -35.81915 -34.16000 -34.13759 -32.93849 -31.33496 -29.86370 -29.33842 -27.44097 -27.09246 -26.76708 -25.59952 -23.99011 -23.77224 -22.74229 -21.86438 -20.40256 -19.58496 -18.75680 -18.56368 -18.26463 -17.62358 -17.09891 -16.83651 -16.59641 -16.42983 -16.03372 -15.96934 -15.59964 -15.56047 -15.22515 -14.97574 -14.73120 -14.53453 -14.40810 -14.07258 -13.85481 -13.48917 -13.40938 -13.35124 -12.94335 -12.89680 -12.83445 -12.66361 -12.58329 -12.54178 -12.37347 -11.92148 -11.77513 -11.70626 -11.58180 -11.30717 -11.27615 -10.87345 -10.73231 -10.39933 -10.16946 -8.95827 -8.94975 -7.92761 -5.26365 -0.40927 -0.16879 1.46574 1.49017 1.57858 1.58847 1.69161 1.88420 2.44384 2.64595 2.86037 2.98562 3.22673 3.37257 3.45449 3.47316 3.59048 3.67616 3.70842 3.78551 3.96472 4.01289 4.09752 4.18803 4.41981 4.49960 4.57723 4.65147 4.68527 4.73637 4.74900 4.81625 4.83927 4.88577 4.90432 4.91179 4.92404 5.00871 5.04179 5.13205 5.20793 5.34906 5.48699 5.87242 5.91815 5.98908 6.16809 6.33818 6.89373 6.96722 7.57888 7.61663 8.53248 9.25372 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.002062 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.880630 B =13573.836397 C =14776.514657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.596 5.596 3 C 0.088 3.912 4 C 0.343 3.657 5 C -0.171 4.171 6 C -0.027 4.027 7 C -0.052 4.052 8 C 0.588 3.412 9 O -0.558 6.558 10 N -0.692 5.692 11 C 0.126 3.874 12 H 0.107 0.893 13 C 0.042 3.958 14 O -0.378 6.378 15 C 0.078 3.922 16 C 0.164 3.836 17 N -0.628 5.628 18 C -0.233 4.233 19 H 0.089 0.911 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.981 3.019 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.264 1.264 26 C 0.117 3.883 27 C -0.111 4.111 28 N -0.183 5.183 29 N -0.331 5.331 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.191 0.809 37 H 0.175 0.825 38 H 0.418 0.582 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.012 0.988 42 H 0.049 0.951 43 H 0.250 0.750 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.775 12.435 -2.620 34.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.307 5.307 3 C -0.054 4.054 4 C 0.102 3.898 5 C -0.203 4.203 6 C -0.056 4.056 7 C -0.204 4.204 8 C 0.373 3.627 9 O -0.435 6.435 10 N -0.344 5.344 11 C 0.020 3.980 12 H 0.125 0.875 13 C -0.036 4.036 14 O -0.295 6.295 15 C 0.037 3.963 16 C 0.038 3.962 17 N -0.357 5.357 18 C -0.361 4.361 19 H 0.107 0.893 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.217 1.217 24 H -0.220 1.220 25 H -0.188 1.188 26 C -0.008 4.008 27 C -0.149 4.149 28 N -0.030 5.030 29 N -0.186 5.186 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.208 0.792 37 H 0.193 0.807 38 H 0.256 0.744 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -30.571 12.686 -2.536 33.196 hybrid contribution 0.415 -0.283 0.316 0.593 sum -30.157 12.403 -2.220 32.684 Atomic orbital electron populations 1.22159 0.75277 1.05673 1.03040 1.46530 1.07075 1.02348 1.74748 1.21863 0.97562 0.83637 1.02338 1.20458 0.90956 0.88793 0.89639 1.22129 1.03660 0.89509 1.05051 1.22344 0.91799 1.01448 0.89960 1.22278 0.94547 0.93455 1.10089 1.17668 0.81998 0.87338 0.75723 1.90780 1.73127 1.28074 1.51550 1.45642 1.05749 1.10234 1.72770 1.22588 0.90595 0.88137 0.96672 0.87482 1.23851 0.86316 0.96962 0.96456 1.88375 1.34166 1.62647 1.44312 1.23739 0.92007 0.95118 0.85433 1.22339 0.89395 0.97056 0.87429 1.45946 1.27925 1.41513 1.20290 1.19386 0.98043 1.22889 0.95785 0.89330 1.25707 1.00621 0.99578 1.00025 1.70024 1.30711 1.29489 1.29746 0.85030 0.79023 0.76495 0.78610 1.21685 1.21983 1.18843 1.22950 0.87159 0.93911 0.96804 1.22755 0.91565 0.99092 1.01454 1.72907 1.31143 0.94789 1.04185 1.73068 1.05314 1.19219 1.21027 0.87538 0.90968 0.90498 0.92574 0.91943 0.88199 0.79194 0.80741 0.74426 0.88363 0.91361 0.97043 0.93232 0.94121 0.91277 0.93922 0.89533 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.12 9.42 127.77 1.20 1.32 16 2 N -0.60 -6.01 3.38 -753.59 -2.54 -8.55 16 3 C 0.09 0.78 10.39 127.77 1.33 2.11 16 4 C 0.34 5.61 7.44 133.21 0.99 6.60 16 5 C -0.17 -2.07 9.40 22.61 0.21 -1.86 16 6 C -0.03 -0.46 9.71 22.72 0.22 -0.24 16 7 C -0.05 -1.20 6.83 42.00 0.29 -0.91 16 8 C 0.59 15.53 7.80 86.79 0.68 16.21 16 9 O -0.56 -16.90 16.14 -3.88 -0.06 -16.96 16 10 N -0.69 -17.88 5.23 -438.17 -2.29 -20.17 16 11 C 0.13 3.58 3.37 46.52 0.16 3.74 16 12 H 0.11 3.10 7.74 -2.39 -0.02 3.09 16 13 C 0.04 1.26 7.49 72.67 0.54 1.80 16 14 O -0.38 -14.27 11.14 -148.98 -1.66 -15.93 16 15 C 0.08 3.14 1.68 -10.31 -0.02 3.12 16 16 C 0.16 8.32 6.92 86.23 0.60 8.92 16 17 N -0.63 -33.35 3.67 -732.87 -2.69 -36.03 16 18 C -0.23 -13.27 10.69 84.04 0.90 -12.37 16 19 H 0.09 4.78 7.83 -2.91 -0.02 4.75 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.95 -58.41 11.51 21.65 0.25 -58.16 16 22 Si 0.98 46.26 29.56 68.60 2.03 48.29 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.12 5.04 8.37 86.24 0.72 5.76 16 27 C -0.11 -3.70 5.96 31.70 0.19 -3.51 16 28 N -0.18 -4.62 10.73 -48.50 -0.52 -5.14 16 29 N -0.33 -7.68 10.34 -55.17 -0.57 -8.25 16 30 H 0.11 -0.25 7.79 -2.38 -0.02 -0.27 16 31 H 0.07 0.02 8.11 -2.38 -0.02 0.00 16 32 H 0.08 -0.05 7.77 -2.39 -0.02 -0.07 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.83 7.46 -2.39 -0.02 0.81 16 35 H 0.10 0.28 7.92 -2.38 -0.02 0.26 16 36 H 0.19 0.69 6.81 -2.91 -0.02 0.67 16 37 H 0.18 2.34 7.71 -2.91 -0.02 2.32 16 38 H 0.42 10.24 7.85 -92.71 -0.73 9.51 16 39 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.05 2.72 7.25 -2.39 -0.02 2.70 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.07 2.67 7.98 -2.39 -0.02 2.65 16 45 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.09 2.90 7.85 -2.39 -0.02 2.88 16 47 H 0.09 3.12 7.83 -2.39 -0.02 3.10 16 Total: -1.00 -77.15 390.92 0.69 -76.46 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.27 Total: 17.12 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 8.48 Total: 27.33 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -8.37 Total: -136.31 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.72 Total: -32.89 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -77.15 0.69 -76.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053985519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.735 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds