Wall clock time and date at job start Wed Apr 1 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46857 * 124.34400 * 2 1 4 4 C 1.54478 * 105.42438 * 197.02188 * 3 2 1 5 5 H 1.09007 * 110.96766 * 216.43690 * 4 3 2 6 6 C 1.50700 * 110.97277 * 92.71359 * 4 3 2 7 7 O 1.21280 * 119.99856 * 3.08821 * 6 4 3 8 8 N 1.34776 * 119.99913 * 183.08678 * 6 4 3 9 9 C 1.46506 * 119.99522 * 179.97438 * 8 6 4 10 10 C 1.50708 * 109.46880 * 180.02562 * 9 8 6 11 11 C 1.40068 * 126.12234 * 260.02992 * 10 9 8 12 12 N 1.31014 * 108.25280 * 180.08743 * 11 10 9 13 13 N 1.39747 * 108.17677 * 0.13873 * 12 11 10 14 14 C 1.34639 * 126.12207 * 80.04906 * 10 9 8 15 15 C 1.50670 * 127.93079 * 359.61680 * 14 10 9 16 16 N 1.47498 * 107.19954 * 169.77069 * 15 14 10 17 17 C 1.36932 * 121.00674 * 222.87116 * 16 15 14 18 18 H 1.08006 * 119.99936 * 154.94002 * 17 16 15 19 19 C 1.38815 * 120.00532 * 334.67035 * 17 16 15 20 20 N 1.31621 * 119.99470 * 347.89094 * 19 17 16 21 21 Si 1.86794 * 120.00323 * 167.89214 * 19 17 16 22 22 H 1.48501 * 109.46840 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.46974 * 209.99821 * 21 19 17 24 24 H 1.48494 * 109.47465 * 330.00251 * 21 19 17 25 25 C 1.47080 * 117.98274 * 42.59679 * 16 15 14 26 26 C 1.46549 * 127.32627 * 179.55367 * 13 12 11 27 27 C 1.54628 * 101.79915 * 334.57344 * 4 3 2 28 28 C 1.34422 * 124.34546 * 179.97438 * 2 1 3 29 29 O 1.21284 * 124.94545 * 359.55319 * 28 2 1 30 30 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47215 * 299.97778 * 1 2 3 32 32 H 1.08992 * 109.47012 * 59.97798 * 1 2 3 33 33 H 1.08995 * 110.26512 * 78.03913 * 3 2 1 34 34 H 1.09001 * 110.27705 * 316.00738 * 3 2 1 35 35 H 0.96994 * 120.00346 * 0.02562 * 8 6 4 36 36 H 1.09004 * 109.47259 * 60.00219 * 9 8 6 37 37 H 1.08991 * 109.47289 * 300.00031 * 9 8 6 38 38 H 1.07997 * 125.87752 * 0.07386 * 11 10 9 39 39 H 1.09000 * 109.91592 * 50.29334 * 15 14 10 40 40 H 1.09001 * 109.78223 * 289.16861 * 15 14 10 41 41 H 0.96998 * 120.00222 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.51140 * 56.61350 * 25 16 15 43 43 H 1.08997 * 109.51290 * 176.71171 * 25 16 15 44 44 H 1.09003 * 109.51078 * 41.41870 * 26 13 12 45 45 H 1.09001 * 109.51168 * 281.27644 * 26 13 12 46 46 H 1.08994 * 110.48391 * 143.49950 * 27 4 3 47 47 H 1.08998 * 110.48394 * 266.00615 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2935 1.2125 0.0000 4 6 3.7010 0.7485 -0.4359 5 1 4.4759 1.3007 0.0958 6 6 3.8749 0.8811 -1.9270 7 8 2.9875 1.3600 -2.6007 8 7 5.0167 0.4677 -2.5116 9 6 5.1855 0.5962 -3.9612 10 6 6.5385 0.0644 -4.3585 11 6 7.6816 0.8297 -4.6223 12 7 8.6578 0.0143 -4.9364 13 7 8.1672 -1.2932 -4.8856 14 6 6.8648 -1.2314 -4.5236 15 6 5.9807 -2.4387 -4.3482 16 7 6.7182 -3.6003 -4.8796 17 6 6.0915 -4.5396 -5.6541 18 1 6.6633 -5.1323 -6.3529 19 6 4.7220 -4.7341 -5.5373 20 7 4.0648 -4.1983 -4.5306 21 14 3.8119 -5.7561 -6.8087 22 1 3.7993 -7.1788 -6.3832 23 1 2.4162 -5.2641 -6.9323 24 1 4.4965 -5.6380 -8.1211 25 6 8.1487 -3.7158 -4.5575 26 6 8.9011 -2.5294 -5.1700 27 6 3.6897 -0.7380 -0.0102 28 6 2.2234 -1.1099 0.0005 29 8 1.7945 -2.2443 0.0088 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8901 32 1 -0.3633 0.5141 -0.8897 33 1 2.3315 1.6438 1.0003 34 1 1.8993 1.9394 -0.7102 35 1 5.7263 0.0844 -1.9728 36 1 5.1100 1.6461 -4.2442 37 1 4.4080 0.0261 -4.4695 38 1 7.7470 1.9066 -4.5752 39 1 5.0520 -2.3026 -4.9023 40 1 5.7652 -2.5875 -3.2901 41 1 3.1078 -4.3339 -4.4491 42 1 8.2798 -3.7106 -3.4754 43 1 8.5401 -4.6469 -4.9671 44 1 9.8992 -2.4682 -4.7362 45 1 8.9799 -2.6660 -6.2486 46 1 4.2325 -1.3461 -0.7338 47 1 4.1216 -0.8533 0.9839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069862143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:08 Heat of formation + Delta-G solvation = 42.709232 kcal Electronic energy + Delta-G solvation = -31453.694141 eV Core-core repulsion = 27253.159029 eV Total energy + Delta-G solvation = -4200.535112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.07962 -40.75505 -38.90383 -36.34816 -36.16601 -34.83549 -33.20486 -32.82864 -31.24393 -30.23575 -28.92738 -27.76482 -26.95556 -26.01574 -24.94033 -23.56467 -22.82207 -21.76405 -20.24880 -20.01140 -19.54578 -18.45085 -17.67666 -16.76565 -16.71630 -16.15215 -15.88709 -15.57826 -15.33035 -15.17383 -14.89295 -14.57893 -13.93330 -13.78135 -13.75170 -13.57124 -13.47761 -13.33982 -13.21552 -12.93952 -12.57707 -12.43385 -12.33465 -12.11877 -11.87458 -11.70604 -11.62265 -11.59270 -11.28570 -10.99382 -10.87886 -10.71883 -10.21469 -10.19302 -10.08033 -9.80811 -9.76216 -8.92154 -8.83283 -8.73875 -8.56693 -7.96119 -7.05563 -5.98266 -3.43779 2.38734 2.63898 2.68987 2.86751 2.98190 3.02730 3.30992 3.38426 3.40415 3.60488 4.15812 4.27620 4.33180 4.62735 4.82037 4.93227 5.07461 5.12342 5.21650 5.22271 5.24247 5.36840 5.42804 5.45548 5.51057 5.53172 5.59092 5.63360 5.68336 5.70458 5.74255 5.83769 6.09350 6.21362 6.34830 6.41002 6.45749 6.51155 6.62378 6.91180 7.05307 7.08123 7.15525 7.56587 7.60601 7.67542 8.11341 8.21011 8.21786 8.33274 8.94235 9.56051 10.08326 11.12275 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008769 B = 0.004093 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.433651 B = 6839.279941 C = 9036.544384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.622 5.622 3 C 0.119 3.881 4 C -0.127 4.127 5 H 0.124 0.876 6 C 0.519 3.481 7 O -0.538 6.538 8 N -0.714 5.714 9 C 0.210 3.790 10 C -0.291 4.291 11 C 0.056 3.944 12 N -0.318 5.318 13 N -0.357 5.357 14 C 0.121 3.879 15 C 0.230 3.770 16 N -0.596 5.596 17 C -0.268 4.268 18 H 0.073 0.927 19 C 0.010 3.990 20 N -0.901 5.901 21 Si 0.909 3.091 22 H -0.284 1.284 23 H -0.287 1.287 24 H -0.279 1.279 25 C 0.129 3.871 26 C 0.113 3.887 27 C -0.147 4.147 28 C 0.518 3.482 29 O -0.523 6.523 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.175 0.825 39 H 0.111 0.889 40 H 0.056 0.944 41 H 0.261 0.739 42 H 0.036 0.964 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 12.419 10.109 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.357 5.357 3 C -0.005 4.005 4 C -0.148 4.148 5 H 0.142 0.858 6 C 0.304 3.696 7 O -0.416 6.416 8 N -0.365 5.365 9 C 0.087 3.913 10 C -0.303 4.303 11 C -0.130 4.130 12 N -0.138 5.138 13 N -0.139 5.139 14 C -0.010 4.010 15 C 0.103 3.897 16 N -0.318 5.318 17 C -0.396 4.396 18 H 0.090 0.910 19 C -0.189 4.189 20 N -0.544 5.544 21 Si 0.738 3.262 22 H -0.211 1.211 23 H -0.213 1.213 24 H -0.204 1.204 25 C 0.001 3.999 26 C -0.011 4.011 27 C -0.188 4.188 28 C 0.305 3.695 29 O -0.399 6.399 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.192 0.808 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.152 11.877 9.238 15.200 hybrid contribution -0.827 -0.487 -0.225 0.986 sum 1.324 11.389 9.013 14.584 Atomic orbital electron populations 1.21523 0.78022 1.03715 1.01337 1.48067 1.06577 1.07126 1.73929 1.21966 0.88618 0.88078 1.01803 1.22327 0.99714 0.98113 0.94688 0.85814 1.20121 0.82170 0.78044 0.89268 1.90696 1.40940 1.44970 1.64963 1.46167 1.17866 1.63007 1.09414 1.19326 0.92821 1.00092 0.79075 1.19407 0.97252 0.91925 1.21713 1.23664 0.90539 0.99287 0.99551 1.77171 1.23512 0.87516 1.25611 1.48509 1.08189 1.05079 1.52080 1.22559 0.86518 0.98221 0.93743 1.19873 0.92442 0.78356 0.99006 1.44153 1.03907 1.24030 1.59738 1.19130 0.91259 1.14770 1.14461 0.90950 1.25079 0.97638 0.99018 0.97200 1.69882 1.08741 1.47178 1.28621 0.86202 0.79228 0.79838 0.80939 1.21097 1.21286 1.20388 1.21272 0.86544 0.94677 0.97442 1.22563 0.95443 0.81247 1.01802 1.22380 0.95931 0.95019 1.05420 1.20773 0.89060 0.84463 0.75212 1.90765 1.78384 1.20972 1.49739 0.89986 0.92292 0.91909 0.90476 0.88522 0.76550 0.91224 0.90818 0.80770 0.87153 0.92655 0.92878 0.94630 0.89722 0.90189 0.90604 0.86909 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 11.14 59.85 0.67 1.69 16 2 N -0.62 -7.76 3.34 -180.22 -0.60 -8.36 16 3 C 0.12 1.12 6.71 -3.07 -0.02 1.10 16 4 C -0.13 -1.19 3.54 -90.14 -0.32 -1.51 16 5 H 0.12 0.69 8.14 -51.92 -0.42 0.27 16 6 C 0.52 6.96 7.12 -10.99 -0.08 6.88 16 7 O -0.54 -9.16 15.51 5.56 0.09 -9.08 16 8 N -0.71 -9.37 5.36 -61.47 -0.33 -9.70 16 9 C 0.21 3.20 5.95 -5.19 -0.03 3.17 16 10 C -0.29 -4.81 5.46 -105.21 -0.57 -5.39 16 11 C 0.06 0.88 11.97 -17.21 -0.21 0.67 16 12 N -0.32 -5.69 12.61 30.70 0.39 -5.31 16 13 N -0.36 -6.69 4.03 -57.06 -0.23 -6.92 16 14 C 0.12 2.34 6.70 -82.35 -0.55 1.79 16 15 C 0.23 5.13 5.06 -4.66 -0.02 5.11 16 16 N -0.60 -13.82 3.02 -173.18 -0.52 -14.35 16 17 C -0.27 -6.88 9.67 -15.06 -0.15 -7.02 16 18 H 0.07 1.81 7.86 -52.48 -0.41 1.39 16 19 C 0.01 0.28 5.08 -17.43 -0.09 0.19 16 20 N -0.90 -25.02 10.95 55.49 0.61 -24.42 16 21 Si 0.91 21.20 29.57 -169.99 -5.03 16.18 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.13 2.39 6.50 -3.59 -0.02 2.36 16 26 C 0.11 1.89 7.44 -3.88 -0.03 1.87 16 27 C -0.15 -1.65 6.40 -26.74 -0.17 -1.82 16 28 C 0.52 7.91 8.02 -10.86 -0.09 7.83 16 29 O -0.52 -10.47 17.35 5.55 0.10 -10.38 16 30 H 0.08 0.99 7.53 -51.93 -0.39 0.60 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.00 6.98 -51.93 -0.36 0.64 16 35 H 0.40 4.61 8.46 -40.82 -0.35 4.27 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.18 2.07 8.06 -52.49 -0.42 1.64 16 39 H 0.11 2.81 6.44 -51.93 -0.33 2.48 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.11 1.46 7.75 -51.93 -0.40 1.06 16 47 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -34.77 388.72 -8.23 -42.99 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.87 Total: 6.57 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: -1.68 Total: 16.91 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.69 Total: -69.04 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.18 Total: -19.45 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.77 -8.23 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069862143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.700 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds