Wall clock time and date at job start Wed Apr 1 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34742 * 124.29805 * 2 1 4 4 O 1.21280 * 125.12113 * 0.42946 * 3 2 1 5 5 C 1.51277 * 109.93718 * 180.40159 * 3 2 1 6 6 C 1.54629 * 104.31424 * 16.30802 * 5 3 2 7 7 C 1.46761 * 124.35356 * 180.02562 * 2 1 3 8 8 H 1.09008 * 110.24164 * 43.97373 * 7 2 1 9 9 C 1.50700 * 110.24698 * 281.97613 * 7 2 1 10 10 O 1.21278 * 120.00133 * 343.94245 * 9 7 2 11 11 N 1.34780 * 119.99902 * 163.95429 * 9 7 2 12 12 C 1.46504 * 120.00057 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.46895 * 179.97438 * 12 11 9 14 14 C 1.40078 * 126.12046 * 260.01472 * 13 12 11 15 15 N 1.31015 * 108.24975 * 180.02562 * 14 13 12 16 16 N 1.39742 * 108.17900 * 0.17254 * 15 14 13 17 17 C 1.34632 * 126.12777 * 79.71907 * 13 12 11 18 18 C 1.51044 * 127.90945 * 359.46660 * 17 13 12 19 19 N 1.47503 * 106.99462 * 169.51213 * 18 17 13 20 20 C 1.36937 * 121.00400 * 222.96272 * 19 18 17 21 21 H 1.08001 * 119.99666 * 155.89625 * 20 19 18 22 22 C 1.38813 * 120.00224 * 335.88925 * 20 19 18 23 23 N 1.31621 * 119.99882 * 344.46240 * 22 20 19 24 24 Si 1.86804 * 119.99867 * 164.45858 * 22 20 19 25 25 H 1.48508 * 109.46829 * 60.00407 * 24 22 20 26 26 H 1.48499 * 109.46820 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47245 * 300.00167 * 24 22 20 28 28 C 1.47079 * 117.98356 * 42.98287 * 19 18 17 29 29 C 1.46555 * 127.32331 * 179.38883 * 16 15 14 30 30 H 1.08999 * 109.46778 * 269.94593 * 1 2 3 31 31 H 1.08993 * 109.47098 * 29.94750 * 1 2 3 32 32 H 1.09007 * 109.46793 * 149.95402 * 1 2 3 33 33 H 1.09002 * 110.48250 * 257.56687 * 5 3 2 34 34 H 1.08997 * 110.48988 * 135.05830 * 5 3 2 35 35 H 1.09000 * 110.96806 * 93.25831 * 6 5 3 36 36 H 1.08998 * 110.97223 * 216.98522 * 6 5 3 37 37 H 0.97006 * 119.99963 * 359.97438 * 11 9 7 38 38 H 1.08999 * 109.46702 * 299.99709 * 12 11 9 39 39 H 1.08992 * 109.46883 * 59.99182 * 12 11 9 40 40 H 1.07994 * 125.87719 * 0.08789 * 14 13 12 41 41 H 1.09004 * 109.94475 * 288.87607 * 18 17 13 42 42 H 1.08990 * 109.94804 * 50.13905 * 18 17 13 43 43 H 0.97000 * 119.99380 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.51298 * 56.37718 * 28 19 18 45 45 H 1.09000 * 109.51491 * 176.47918 * 28 19 18 46 46 H 1.09000 * 109.50500 * 281.41097 * 29 16 15 47 47 H 1.08994 * 109.51083 * 41.54857 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2243 1.1131 0.0000 4 8 1.7980 2.2485 0.0074 5 6 3.6897 0.7379 -0.0100 6 6 3.7010 -0.7483 -0.4366 7 6 2.2932 -1.2116 -0.0005 8 1 1.8983 -1.9380 -0.7110 9 6 2.3453 -1.8083 1.3823 10 8 2.0066 -1.1474 2.3411 11 7 2.7684 -3.0765 1.5535 12 6 2.8185 -3.6568 2.8978 13 6 3.3221 -5.0747 2.8143 14 6 2.5356 -6.2335 2.8449 15 7 3.3298 -7.2710 2.7492 16 7 4.6448 -6.8067 2.6588 17 6 4.6079 -5.4545 2.6913 18 6 5.8310 -4.5731 2.5978 19 7 7.0074 -5.4525 2.7331 20 6 8.0740 -5.0890 3.5112 21 1 8.7276 -5.8459 3.9191 22 6 8.3152 -3.7478 3.7755 23 7 7.7278 -2.8184 3.0519 24 14 9.4735 -3.2620 5.1583 25 1 10.8226 -3.8240 4.8943 26 1 9.5597 -1.7815 5.2346 27 1 8.9586 -3.7944 6.4454 28 6 7.0003 -6.7313 2.0066 29 6 5.8653 -7.6104 2.5489 30 1 -0.3633 -0.0010 1.0277 31 1 -0.3633 0.8904 -0.5130 32 1 -0.3633 -0.8896 -0.5146 33 1 4.1195 0.8524 0.9852 34 1 4.2344 1.3463 -0.7320 35 1 3.8267 -0.8435 -1.5152 36 1 4.4759 -1.3008 0.0947 37 1 3.0391 -3.6052 0.7866 38 1 3.4904 -3.0684 3.5226 39 1 1.8194 -3.6514 3.3332 40 1 1.4596 -6.2660 2.9314 41 1 5.8529 -4.0688 1.6317 42 1 5.8218 -3.8378 3.4022 43 1 7.8962 -1.8812 3.2369 44 1 6.8459 -6.5454 0.9438 45 1 7.9541 -7.2384 2.1527 46 1 6.1335 -8.0010 3.5306 47 1 5.6953 -8.4384 1.8609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069870187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:36 Heat of formation + Delta-G solvation = 43.797637 kcal Electronic energy + Delta-G solvation = -31312.740174 eV Core-core repulsion = 27112.252259 eV Total energy + Delta-G solvation = -4200.487915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.12641 -40.83715 -38.84661 -36.40817 -36.21262 -34.85156 -33.12081 -32.84166 -31.39320 -30.29570 -29.36114 -27.95568 -26.73963 -26.06679 -24.85201 -23.58064 -22.65289 -21.82294 -20.61477 -20.25192 -19.46359 -18.51069 -17.71361 -16.89637 -16.78878 -16.16899 -16.02817 -15.49205 -15.35507 -15.04134 -14.87767 -14.57455 -13.97683 -13.89186 -13.76125 -13.70544 -13.50534 -13.39885 -13.25605 -12.92070 -12.67718 -12.58848 -12.53179 -12.37731 -11.77506 -11.70667 -11.52658 -11.37797 -11.35524 -11.04662 -10.92169 -10.79940 -10.26988 -10.26715 -10.14714 -10.07075 -9.84162 -8.97698 -8.88533 -8.79691 -8.62063 -7.99630 -7.14978 -6.07958 -3.50248 2.32510 2.48709 2.63107 2.74626 2.93058 2.98709 3.25841 3.33603 3.34174 3.64410 4.21263 4.26709 4.30183 4.62246 4.77799 4.88140 4.96313 5.00274 5.10308 5.14312 5.19500 5.30395 5.39347 5.45375 5.47665 5.54723 5.61296 5.64520 5.65248 5.74783 5.78261 5.82166 6.04855 6.15807 6.28356 6.31687 6.34841 6.45464 6.58126 6.82591 6.93663 7.00681 7.06281 7.50359 7.53910 7.63919 8.03026 8.09267 8.16064 8.31228 8.86090 9.48291 10.00450 11.03078 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009949 B = 0.003574 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.552956 B = 7832.785891 C = 9818.582516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.603 5.603 3 C 0.527 3.473 4 O -0.533 6.533 5 C -0.155 4.155 6 C -0.121 4.121 7 C 0.114 3.886 8 H 0.109 0.891 9 C 0.499 3.501 10 O -0.531 6.531 11 N -0.714 5.714 12 C 0.211 3.789 13 C -0.289 4.289 14 C 0.056 3.944 15 N -0.318 5.318 16 N -0.357 5.357 17 C 0.120 3.880 18 C 0.231 3.769 19 N -0.596 5.596 20 C -0.266 4.266 21 H 0.073 0.927 22 C 0.011 3.989 23 N -0.903 5.903 24 Si 0.908 3.092 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.282 1.282 28 C 0.129 3.871 29 C 0.113 3.887 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.400 0.600 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.175 0.825 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.260 0.740 44 H 0.037 0.963 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 -2.426 -8.931 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.337 5.337 3 C 0.315 3.685 4 O -0.410 6.410 5 C -0.195 4.195 6 C -0.159 4.159 7 C 0.006 3.994 8 H 0.127 0.873 9 C 0.282 3.718 10 O -0.407 6.407 11 N -0.366 5.366 12 C 0.087 3.913 13 C -0.302 4.302 14 C -0.131 4.131 15 N -0.137 5.137 16 N -0.138 5.138 17 C -0.012 4.012 18 C 0.104 3.896 19 N -0.319 5.319 20 C -0.394 4.394 21 H 0.091 0.909 22 C -0.189 4.189 23 N -0.547 5.547 24 Si 0.737 3.263 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.208 1.208 28 C 0.001 3.999 29 C -0.010 4.010 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.234 0.766 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.192 0.808 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.770 -2.540 -8.244 13.033 hybrid contribution 0.538 0.529 0.534 0.924 sum -9.232 -2.011 -7.710 12.195 Atomic orbital electron populations 1.21554 0.77820 1.02704 1.02343 1.47877 1.06330 1.06021 1.73456 1.20938 0.89311 0.84051 0.74154 1.90704 1.78960 1.20806 1.50497 1.22353 0.94507 0.97151 1.05535 1.22619 0.94327 0.95837 1.03119 1.21632 0.93774 0.88694 0.95304 0.87300 1.20848 0.77809 0.81969 0.91154 1.90726 1.47785 1.60426 1.41780 1.46211 1.66451 1.13213 1.10705 1.19314 1.00508 0.88494 0.82955 1.19409 0.92023 0.95256 1.23479 1.23676 0.99355 0.89848 1.00183 1.77183 0.87480 1.23468 1.25616 1.48513 1.05090 1.04756 1.55482 1.22600 0.98191 0.85663 0.94725 1.19922 0.77692 0.89626 1.02311 1.44195 1.16625 1.17193 1.53864 1.19120 1.05381 0.91248 1.23689 0.90929 1.25007 0.98900 0.95985 0.98990 1.69913 1.46167 1.00145 1.38449 0.86284 0.80467 0.77473 0.82054 1.20683 1.21299 1.20829 1.21315 0.95533 0.88368 0.94698 1.22600 0.81645 0.94380 1.02415 0.92226 0.90580 0.91211 0.87156 0.87631 0.88702 0.87718 0.76576 0.90766 0.91349 0.80792 0.92568 0.87321 0.92984 0.94514 0.89737 0.90511 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.99 10.96 59.85 0.66 1.65 16 2 N -0.60 -7.28 2.55 -173.92 -0.44 -7.73 16 3 C 0.53 7.51 8.04 -10.72 -0.09 7.42 16 4 O -0.53 -9.49 17.61 5.56 0.10 -9.39 16 5 C -0.16 -1.76 6.84 -26.74 -0.18 -1.94 16 6 C -0.12 -1.10 6.69 -25.09 -0.17 -1.27 16 7 C 0.11 1.15 3.50 -68.16 -0.24 0.91 16 8 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 9 C 0.50 6.61 7.00 -10.98 -0.08 6.53 16 10 O -0.53 -9.34 16.56 5.56 0.09 -9.25 16 11 N -0.71 -8.80 5.55 -61.47 -0.34 -9.14 16 12 C 0.21 3.06 5.95 -5.19 -0.03 3.03 16 13 C -0.29 -4.58 5.46 -105.21 -0.57 -5.15 16 14 C 0.06 0.85 11.97 -17.21 -0.21 0.64 16 15 N -0.32 -5.51 12.61 30.70 0.39 -5.12 16 16 N -0.36 -6.41 4.03 -56.83 -0.23 -6.64 16 17 C 0.12 2.19 6.71 -82.17 -0.55 1.64 16 18 C 0.23 4.82 5.11 -4.48 -0.02 4.79 16 19 N -0.60 -13.08 3.01 -172.84 -0.52 -13.60 16 20 C -0.27 -6.51 9.66 -15.06 -0.15 -6.66 16 21 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 22 C 0.01 0.27 5.00 -17.43 -0.09 0.18 16 23 N -0.90 -23.26 11.07 55.49 0.61 -22.65 16 24 Si 0.91 20.19 29.58 -169.99 -5.03 15.16 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 C 0.13 2.26 6.51 -3.49 -0.02 2.23 16 29 C 0.11 1.81 7.45 -3.77 -0.03 1.78 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16 37 H 0.40 4.19 8.46 -40.82 -0.35 3.84 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.18 2.02 8.06 -52.49 -0.42 1.59 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.11 2.59 6.46 -51.93 -0.34 2.26 16 43 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.37 7.94 -51.93 -0.41 0.95 16 46 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -32.85 391.39 -8.20 -41.04 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.96 Total: 5.62 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: -1.77 Total: 15.80 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.53 Total: -64.88 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.19 Total: -18.64 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.85 -8.20 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069870187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.842 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds