Wall clock time and date at job start Wed Apr 1 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34742 * 124.29805 * 2 1 4 4 O 1.21280 * 125.12113 * 0.42946 * 3 2 1 5 5 C 1.51277 * 109.93718 * 180.40159 * 3 2 1 6 6 C 1.54629 * 104.31424 * 16.30802 * 5 3 2 7 7 C 1.46761 * 124.35356 * 180.02562 * 2 1 3 8 8 H 1.09008 * 110.24164 * 43.97373 * 7 2 1 9 9 C 1.50700 * 110.24698 * 281.97613 * 7 2 1 10 10 O 1.21278 * 120.00133 * 343.94245 * 9 7 2 11 11 N 1.34780 * 119.99902 * 163.95429 * 9 7 2 12 12 C 1.46504 * 120.00057 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.46895 * 179.97438 * 12 11 9 14 14 C 1.40078 * 126.12046 * 260.01472 * 13 12 11 15 15 N 1.31015 * 108.24975 * 180.02562 * 14 13 12 16 16 N 1.39742 * 108.17900 * 0.17254 * 15 14 13 17 17 C 1.34632 * 126.12777 * 79.71907 * 13 12 11 18 18 C 1.51044 * 127.90945 * 359.46660 * 17 13 12 19 19 N 1.47503 * 106.99462 * 169.51213 * 18 17 13 20 20 C 1.36937 * 121.00400 * 222.96272 * 19 18 17 21 21 H 1.08001 * 119.99666 * 155.89625 * 20 19 18 22 22 C 1.38813 * 120.00224 * 335.88925 * 20 19 18 23 23 N 1.31621 * 119.99882 * 344.46240 * 22 20 19 24 24 Si 1.86804 * 119.99867 * 164.45858 * 22 20 19 25 25 H 1.48508 * 109.46829 * 60.00407 * 24 22 20 26 26 H 1.48499 * 109.46820 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47245 * 300.00167 * 24 22 20 28 28 C 1.47079 * 117.98356 * 42.98287 * 19 18 17 29 29 C 1.46555 * 127.32331 * 179.38883 * 16 15 14 30 30 H 1.08999 * 109.46778 * 269.94593 * 1 2 3 31 31 H 1.08993 * 109.47098 * 29.94750 * 1 2 3 32 32 H 1.09007 * 109.46793 * 149.95402 * 1 2 3 33 33 H 1.09002 * 110.48250 * 257.56687 * 5 3 2 34 34 H 1.08997 * 110.48988 * 135.05830 * 5 3 2 35 35 H 1.09000 * 110.96806 * 93.25831 * 6 5 3 36 36 H 1.08998 * 110.97223 * 216.98522 * 6 5 3 37 37 H 0.97006 * 119.99963 * 359.97438 * 11 9 7 38 38 H 1.08999 * 109.46702 * 299.99709 * 12 11 9 39 39 H 1.08992 * 109.46883 * 59.99182 * 12 11 9 40 40 H 1.07994 * 125.87719 * 0.08789 * 14 13 12 41 41 H 1.09004 * 109.94475 * 288.87607 * 18 17 13 42 42 H 1.08990 * 109.94804 * 50.13905 * 18 17 13 43 43 H 0.97000 * 119.99380 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.51298 * 56.37718 * 28 19 18 45 45 H 1.09000 * 109.51491 * 176.47918 * 28 19 18 46 46 H 1.09000 * 109.50500 * 281.41097 * 29 16 15 47 47 H 1.08994 * 109.51083 * 41.54857 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2243 1.1131 0.0000 4 8 1.7980 2.2485 0.0074 5 6 3.6897 0.7379 -0.0100 6 6 3.7010 -0.7483 -0.4366 7 6 2.2932 -1.2116 -0.0005 8 1 1.8983 -1.9380 -0.7110 9 6 2.3453 -1.8083 1.3823 10 8 2.0066 -1.1474 2.3411 11 7 2.7684 -3.0765 1.5535 12 6 2.8185 -3.6568 2.8978 13 6 3.3221 -5.0747 2.8143 14 6 2.5356 -6.2335 2.8449 15 7 3.3298 -7.2710 2.7492 16 7 4.6448 -6.8067 2.6588 17 6 4.6079 -5.4545 2.6913 18 6 5.8310 -4.5731 2.5978 19 7 7.0074 -5.4525 2.7331 20 6 8.0740 -5.0890 3.5112 21 1 8.7276 -5.8459 3.9191 22 6 8.3152 -3.7478 3.7755 23 7 7.7278 -2.8184 3.0519 24 14 9.4735 -3.2620 5.1583 25 1 10.8226 -3.8240 4.8943 26 1 9.5597 -1.7815 5.2346 27 1 8.9586 -3.7944 6.4454 28 6 7.0003 -6.7313 2.0066 29 6 5.8653 -7.6104 2.5489 30 1 -0.3633 -0.0010 1.0277 31 1 -0.3633 0.8904 -0.5130 32 1 -0.3633 -0.8896 -0.5146 33 1 4.1195 0.8524 0.9852 34 1 4.2344 1.3463 -0.7320 35 1 3.8267 -0.8435 -1.5152 36 1 4.4759 -1.3008 0.0947 37 1 3.0391 -3.6052 0.7866 38 1 3.4904 -3.0684 3.5226 39 1 1.8194 -3.6514 3.3332 40 1 1.4596 -6.2660 2.9314 41 1 5.8529 -4.0688 1.6317 42 1 5.8218 -3.8378 3.4022 43 1 7.8962 -1.8812 3.2369 44 1 6.8459 -6.5454 0.9438 45 1 7.9541 -7.2384 2.1527 46 1 6.1335 -8.0010 3.5306 47 1 5.6953 -8.4384 1.8609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069870187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:35 Heat of formation + Delta-G solvation = 20.833478 kcal Electronic energy + Delta-G solvation = -31313.735975 eV Core-core repulsion = 27112.252259 eV Total energy + Delta-G solvation = -4201.483716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.41600 -41.88179 -39.99266 -37.93422 -37.33806 -36.08092 -34.61605 -33.76878 -32.88270 -31.79619 -30.62463 -29.07951 -27.68427 -27.58522 -26.15625 -25.09461 -23.64797 -23.21389 -21.67199 -21.57138 -20.51564 -19.91169 -18.77461 -18.51114 -17.88371 -17.50654 -17.18656 -16.69903 -16.56008 -16.46424 -16.03602 -15.89191 -15.46514 -15.24497 -14.97270 -14.79057 -14.72468 -14.64091 -14.56587 -14.04710 -13.90489 -13.71360 -13.52882 -13.31697 -13.19809 -13.07044 -12.92853 -12.70533 -12.58837 -12.36062 -12.35538 -12.25712 -12.00259 -11.89820 -11.58253 -11.20107 -10.95196 -10.74311 -10.04265 -10.02528 -9.82595 -9.32472 -8.90888 -7.96788 -5.38699 0.96480 1.38535 1.46932 1.50988 1.55078 1.58348 1.63085 1.68307 1.95946 2.46537 2.57197 3.22877 3.30093 3.46941 3.47566 3.63995 3.77439 3.87075 3.92144 4.15629 4.18026 4.22703 4.27572 4.35478 4.38528 4.41178 4.49805 4.60717 4.79212 4.80557 4.82269 4.84138 4.92343 4.96902 4.97933 5.02554 5.06328 5.28146 5.41011 5.41458 5.47676 5.61689 5.79047 5.95141 6.12833 6.23574 6.61930 6.84083 7.03118 7.03826 7.27996 7.68833 8.19367 9.12037 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009949 B = 0.003574 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.552956 B = 7832.785891 C = 9818.582516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.602 5.602 3 C 0.514 3.486 4 O -0.580 6.580 5 C -0.157 4.157 6 C -0.111 4.111 7 C 0.118 3.882 8 H 0.158 0.842 9 C 0.498 3.502 10 O -0.580 6.580 11 N -0.701 5.701 12 C 0.218 3.782 13 C -0.274 4.274 14 C 0.067 3.933 15 N -0.329 5.329 16 N -0.367 5.367 17 C 0.098 3.902 18 C 0.249 3.751 19 N -0.616 5.616 20 C -0.270 4.270 21 H 0.076 0.924 22 C -0.036 4.036 23 N -0.925 5.925 24 Si 0.958 3.042 25 H -0.272 1.272 26 H -0.296 1.296 27 H -0.285 1.285 28 C 0.129 3.871 29 C 0.117 3.883 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.214 0.786 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.322 -4.806 -10.544 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.334 5.334 3 C 0.304 3.696 4 O -0.460 6.460 5 C -0.197 4.197 6 C -0.149 4.149 7 C 0.011 3.989 8 H 0.175 0.825 9 C 0.284 3.716 10 O -0.460 6.460 11 N -0.353 5.353 12 C 0.094 3.906 13 C -0.286 4.286 14 C -0.120 4.120 15 N -0.149 5.149 16 N -0.149 5.149 17 C -0.034 4.034 18 C 0.122 3.878 19 N -0.339 5.339 20 C -0.399 4.399 21 H 0.094 0.906 22 C -0.232 4.232 23 N -0.569 5.569 24 Si 0.787 3.213 25 H -0.198 1.198 26 H -0.222 1.222 27 H -0.212 1.212 28 C 0.002 3.998 29 C -0.006 4.006 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.249 0.751 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.230 0.770 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.092 0.908 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.624 -5.011 -9.890 15.355 hybrid contribution 0.759 1.190 1.068 1.770 sum -9.865 -3.822 -8.822 13.775 Atomic orbital electron populations 1.21709 0.76860 1.04489 1.01806 1.48061 1.07217 1.06107 1.71967 1.21455 0.90688 0.83925 0.73544 1.90664 1.79935 1.22644 1.52758 1.22384 0.92817 0.99349 1.05121 1.22680 0.93356 0.93554 1.05266 1.21878 0.94439 0.88697 0.93925 0.82466 1.21471 0.76531 0.81584 0.92057 1.90716 1.50024 1.61520 1.43727 1.46027 1.65827 1.13199 1.10263 1.19114 1.00223 0.87499 0.83800 1.19496 0.91317 0.95985 1.21828 1.24241 1.00861 0.88501 0.98346 1.77180 0.87277 1.24237 1.26197 1.48684 1.05808 1.04498 1.55871 1.22253 0.97982 0.86021 0.97132 1.19400 0.78868 0.89357 1.00156 1.44413 1.16345 1.18651 1.54515 1.19413 1.05604 0.91312 1.23568 0.90645 1.25587 1.00583 0.96279 1.00782 1.70035 1.47524 0.99767 1.39621 0.85482 0.79470 0.76449 0.79882 1.19788 1.22235 1.21185 1.21468 0.96995 0.86629 0.94674 1.22570 0.80608 0.94445 1.02990 0.93923 0.90843 0.87413 0.89120 0.85806 0.84885 0.88583 0.75074 0.93990 0.90113 0.76999 0.93809 0.91155 0.93807 0.93669 0.88555 0.90783 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.76 10.96 127.77 1.40 3.16 16 2 N -0.60 -13.76 2.55 -822.57 -2.10 -15.87 16 3 C 0.51 14.70 8.04 87.85 0.71 15.41 16 4 O -0.58 -21.33 17.61 -3.03 -0.05 -21.38 16 5 C -0.16 -3.50 6.84 30.59 0.21 -3.29 16 6 C -0.11 -1.78 6.69 31.66 0.21 -1.57 16 7 C 0.12 2.08 3.50 44.70 0.16 2.24 16 8 H 0.16 1.35 8.14 -2.38 -0.02 1.33 16 9 C 0.50 12.68 7.00 87.66 0.61 13.29 16 10 O -0.58 -20.71 16.56 -3.02 -0.05 -20.76 16 11 N -0.70 -16.26 5.55 -466.79 -2.59 -18.85 16 12 C 0.22 6.20 5.95 85.63 0.51 6.71 16 13 C -0.27 -8.23 5.46 -20.25 -0.11 -8.34 16 14 C 0.07 1.80 11.97 85.26 1.02 2.82 16 15 N -0.33 -10.46 12.61 -56.79 -0.72 -11.17 16 16 N -0.37 -12.45 4.03 -333.70 -1.34 -13.80 16 17 C 0.10 3.48 6.71 41.30 0.28 3.76 16 18 C 0.25 10.55 5.11 85.55 0.44 10.98 16 19 N -0.62 -26.98 3.01 -700.76 -2.11 -29.09 16 20 C -0.27 -13.25 9.66 84.03 0.81 -12.44 16 21 H 0.08 3.58 7.88 -2.91 -0.02 3.55 16 22 C -0.04 -1.81 5.00 84.86 0.42 -1.38 16 23 N -0.92 -49.01 11.07 21.65 0.24 -48.77 16 24 Si 0.96 42.09 29.58 68.60 2.03 44.12 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 28 C 0.13 4.32 6.51 86.42 0.56 4.88 16 29 C 0.12 3.47 7.45 86.52 0.64 4.11 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.43 7.94 -2.39 -0.02 1.42 16 32 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.78 7.89 -2.39 -0.02 1.77 16 37 H 0.41 7.60 8.46 -92.70 -0.78 6.82 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 3.51 6.46 -2.39 -0.02 3.50 16 43 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.10 2.95 7.94 -2.39 -0.02 2.93 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -74.49 391.39 1.40 -73.10 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.21 Total: 22.13 kcal Atomic # 6 Polarization: 32.47 SS G_CDS: 7.88 Total: 40.35 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -8.62 Total: -137.55 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.10 Total: -42.14 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -74.49 1.40 -73.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069870187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.929 kcal (2) G-P(sol) polarization free energy of solvation -74.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds