Wall clock time and date at job start Wed Apr 1 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46763 * 124.34659 * 2 1 4 4 C 1.54487 * 105.47467 * 162.98917 * 3 2 1 5 5 C 1.54626 * 101.76254 * 25.41291 * 4 3 2 6 6 H 1.08995 * 110.48947 * 94.01667 * 5 4 3 7 7 C 1.50704 * 110.48919 * 216.52873 * 5 4 3 8 8 O 1.21287 * 119.99537 * 359.97438 * 7 5 4 9 9 N 1.34768 * 120.00276 * 180.02562 * 7 5 4 10 10 C 1.46498 * 120.00131 * 179.97438 * 9 7 5 11 11 C 1.50695 * 109.47546 * 180.02562 * 10 9 7 12 12 C 1.40075 * 126.12631 * 259.97802 * 11 10 9 13 13 N 1.31010 * 108.25576 * 180.02562 * 12 11 10 14 14 N 1.39740 * 108.18048 * 0.14442 * 13 12 11 15 15 C 1.34641 * 126.12582 * 79.99769 * 11 10 9 16 16 C 1.50664 * 127.92541 * 359.73594 * 15 11 10 17 17 N 1.47495 * 107.19261 * 169.66614 * 16 15 11 18 18 C 1.36935 * 121.01629 * 222.89591 * 17 16 15 19 19 H 1.08000 * 120.00022 * 154.93188 * 18 17 16 20 20 C 1.38814 * 120.00008 * 334.66628 * 18 17 16 21 21 N 1.31621 * 119.99974 * 347.89444 * 20 18 17 22 22 Si 1.86800 * 120.00015 * 167.89342 * 20 18 17 23 23 H 1.48502 * 109.47298 * 60.00082 * 22 20 18 24 24 H 1.48505 * 109.46926 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47388 * 300.00245 * 22 20 18 26 26 C 1.47087 * 117.97442 * 42.62728 * 17 16 15 27 27 C 1.46550 * 127.32722 * 179.53882 * 14 13 12 28 28 C 1.34418 * 124.35261 * 180.02562 * 2 1 3 29 29 O 1.21284 * 124.93908 * 0.44287 * 28 2 1 30 30 H 1.09004 * 109.47568 * 90.00136 * 1 2 3 31 31 H 1.09009 * 109.47066 * 209.99834 * 1 2 3 32 32 H 1.09002 * 109.47261 * 329.99534 * 1 2 3 33 33 H 1.08995 * 110.24826 * 43.98832 * 3 2 1 34 34 H 1.09003 * 110.32282 * 282.02249 * 3 2 1 35 35 H 1.09003 * 110.96475 * 267.29772 * 4 3 2 36 36 H 1.08994 * 110.97509 * 143.53592 * 4 3 2 37 37 H 0.96999 * 120.00275 * 0.02562 * 9 7 5 38 38 H 1.09003 * 109.47135 * 59.99865 * 10 9 7 39 39 H 1.09006 * 109.47387 * 300.00367 * 10 9 7 40 40 H 1.08007 * 125.86995 * 0.09745 * 12 11 10 41 41 H 1.09005 * 109.91702 * 50.19849 * 16 15 11 42 42 H 1.08999 * 109.78441 * 289.06469 * 16 15 11 43 43 H 0.96994 * 119.99875 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.51177 * 56.59770 * 26 17 16 45 45 H 1.08999 * 109.51899 * 176.69914 * 26 17 16 46 46 H 1.09001 * 109.50809 * 41.53380 * 27 14 13 47 47 H 1.09001 * 109.50979 * 281.40354 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7010 0.7488 0.4356 5 6 3.6898 -0.7377 0.0100 6 1 4.1215 -0.8532 -0.9842 7 6 4.4403 -1.5785 1.0104 8 8 4.9463 -1.0577 1.9819 9 7 4.5501 -2.9089 0.8251 10 6 5.2802 -3.7261 1.7973 11 6 5.2560 -5.1682 1.3604 12 6 4.4063 -6.1664 1.8539 13 7 4.6839 -7.2858 1.2323 14 7 5.7193 -7.0369 0.3275 15 6 6.0475 -5.7279 0.4260 16 6 7.1218 -5.0642 -0.3959 17 7 7.8661 -6.1343 -1.0861 18 6 9.2330 -6.1056 -1.1644 19 1 9.7861 -7.0247 -1.2890 20 6 9.9072 -4.8945 -1.0891 21 7 9.2407 -3.7633 -1.1825 22 14 11.7603 -4.8702 -0.8552 23 1 12.4117 -5.5735 -1.9893 24 1 12.2347 -3.4638 -0.8073 25 1 12.1078 -5.5539 0.4164 26 6 7.0960 -7.2363 -1.6826 27 6 6.3604 -7.9969 -0.5754 28 6 2.2234 -1.1097 -0.0005 29 8 1.7946 -2.2442 -0.0087 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.8983 1.9383 0.7102 34 1 2.3308 1.6444 -0.9998 35 1 3.8269 0.8448 1.5140 36 1 4.4753 1.3011 -0.0967 37 1 4.1464 -3.3252 0.0475 38 1 4.8087 -3.6346 2.7758 39 1 6.3129 -3.3826 1.8582 40 1 3.6513 -6.0355 2.6150 41 1 7.7936 -4.5036 0.2541 42 1 6.6669 -4.3962 -1.1273 43 1 9.7118 -2.9171 -1.1295 44 1 6.3701 -6.8328 -2.3886 45 1 7.7729 -7.9134 -2.2036 46 1 5.6021 -8.6433 -1.0173 47 1 7.0742 -8.6018 -0.0162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069870439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:41 Heat of formation + Delta-G solvation = 42.516376 kcal Electronic energy + Delta-G solvation = -31165.857439 eV Core-core repulsion = 26965.313964 eV Total energy + Delta-G solvation = -4200.543475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.06364 -40.82408 -38.76242 -36.62249 -36.27346 -34.70747 -33.08198 -32.89429 -31.24071 -30.17957 -29.12475 -27.92960 -27.01403 -25.99041 -24.76026 -23.47563 -22.38965 -21.69496 -20.68671 -20.10374 -19.53177 -18.36210 -17.48829 -17.05508 -16.69949 -16.41224 -16.00055 -15.65452 -15.28602 -15.03345 -14.78667 -14.45167 -14.02639 -13.86451 -13.73285 -13.69696 -13.47082 -13.29812 -13.12812 -12.95654 -12.73750 -12.56334 -12.41008 -12.30782 -11.93990 -11.66008 -11.55542 -11.27248 -11.24579 -10.96993 -10.85487 -10.71301 -10.19886 -10.14481 -10.09004 -10.03331 -9.74495 -9.00510 -8.89075 -8.67697 -8.49057 -7.86212 -7.04853 -5.99608 -3.44185 2.25541 2.49246 2.61163 2.91888 3.04827 3.08956 3.30048 3.36833 3.37326 3.75876 4.07191 4.23858 4.32474 4.71207 4.73222 4.94617 5.00928 5.04518 5.08877 5.09921 5.24088 5.26394 5.28009 5.42481 5.43540 5.59464 5.61583 5.65800 5.66200 5.77052 5.90083 5.91998 6.17848 6.19989 6.25745 6.43335 6.45432 6.60421 6.76523 6.77265 6.96011 7.15727 7.20058 7.58619 7.66207 7.82104 7.92089 8.12300 8.30154 8.43987 8.94290 9.55657 10.09067 11.11221 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011245 B = 0.003271 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.426353 B = 8559.098123 C =10110.083480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.624 5.624 3 C 0.101 3.899 4 C -0.116 4.116 5 C -0.151 4.151 6 H 0.136 0.864 7 C 0.531 3.469 8 O -0.542 6.542 9 N -0.703 5.703 10 C 0.210 3.790 11 C -0.287 4.287 12 C 0.059 3.941 13 N -0.319 5.319 14 N -0.359 5.359 15 C 0.119 3.881 16 C 0.231 3.769 17 N -0.597 5.597 18 C -0.263 4.263 19 H 0.073 0.927 20 C 0.008 3.992 21 N -0.905 5.905 22 Si 0.911 3.089 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.282 1.282 26 C 0.129 3.871 27 C 0.114 3.886 28 C 0.528 3.472 29 O -0.515 6.515 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.406 0.594 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.175 0.825 41 H 0.111 0.889 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.036 0.964 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 8.670 0.648 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.359 5.359 3 C -0.021 4.021 4 C -0.154 4.154 5 C -0.175 4.175 6 H 0.154 0.846 7 C 0.315 3.685 8 O -0.421 6.421 9 N -0.353 5.353 10 C 0.087 3.913 11 C -0.299 4.299 12 C -0.128 4.128 13 N -0.138 5.138 14 N -0.140 5.140 15 C -0.012 4.012 16 C 0.104 3.896 17 N -0.319 5.319 18 C -0.391 4.391 19 H 0.090 0.910 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.740 3.260 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.010 4.010 28 C 0.314 3.686 29 O -0.390 6.390 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.241 0.759 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.192 0.808 41 H 0.129 0.871 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.427 7.202 1.115 16.163 hybrid contribution 0.810 0.659 -0.261 1.076 sum -13.617 7.861 0.854 15.746 Atomic orbital electron populations 1.21554 0.77747 1.03232 1.01935 1.48088 1.06584 1.07345 1.73868 1.22199 0.90675 0.87219 1.02050 1.22603 0.96069 0.92025 1.04741 1.22183 0.94667 0.97816 1.02851 0.84608 1.19592 0.80328 0.82639 0.85933 1.90685 1.48602 1.72304 1.30465 1.46150 1.54686 1.06645 1.27781 1.19336 0.96692 0.84627 0.90681 1.19402 1.06160 0.96660 1.07699 1.23665 0.99242 0.90228 0.99622 1.77157 1.06260 1.23539 1.06888 1.48479 1.27065 1.07729 1.30718 1.22498 0.97026 0.85202 0.96507 1.19863 0.88005 0.89018 0.92711 1.44164 1.02966 1.22993 1.61790 1.19128 0.80530 0.92633 1.46855 0.90977 1.25070 0.98508 0.95427 1.00089 1.69902 1.35152 0.96924 1.52924 0.86239 0.84511 0.76880 0.78343 1.20756 1.21335 1.20832 1.21255 0.94857 0.91903 0.91921 1.22509 0.95934 0.91091 0.91450 1.20370 0.88042 0.84627 0.75574 1.90773 1.78075 1.20682 1.49434 0.92495 0.90598 0.90957 0.90015 0.90747 0.87977 0.88391 0.75947 0.91388 0.90648 0.80806 0.87115 0.92678 0.93023 0.94625 0.89740 0.90203 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 10.96 59.84 0.66 1.37 16 2 N -0.62 -6.03 3.33 -180.28 -0.60 -6.64 16 3 C 0.10 0.69 7.35 -3.12 -0.02 0.67 16 4 C -0.12 -1.04 6.48 -25.10 -0.16 -1.20 16 5 C -0.15 -1.79 3.32 -91.78 -0.31 -2.10 16 6 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 7 C 0.53 8.34 7.12 -10.99 -0.08 8.26 16 8 O -0.54 -9.87 15.49 5.55 0.09 -9.78 16 9 N -0.70 -11.39 5.28 -61.47 -0.32 -11.71 16 10 C 0.21 3.61 5.95 -5.20 -0.03 3.58 16 11 C -0.29 -5.31 5.46 -105.21 -0.57 -5.89 16 12 C 0.06 1.05 11.97 -17.21 -0.21 0.84 16 13 N -0.32 -6.24 12.61 30.70 0.39 -5.85 16 14 N -0.36 -7.19 4.03 -57.11 -0.23 -7.42 16 15 C 0.12 2.46 6.70 -82.35 -0.55 1.91 16 16 C 0.23 5.28 5.06 -4.67 -0.02 5.26 16 17 N -0.60 -14.05 3.02 -173.24 -0.52 -14.57 16 18 C -0.26 -6.74 9.67 -15.06 -0.15 -6.88 16 19 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 20 C 0.01 0.22 5.08 -17.43 -0.09 0.13 16 21 N -0.91 -24.45 10.95 55.49 0.61 -23.84 16 22 Si 0.91 20.77 29.57 -169.99 -5.03 15.74 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.13 2.47 6.49 -3.64 -0.02 2.44 16 27 C 0.11 2.01 7.44 -3.93 -0.03 1.98 16 28 C 0.53 6.82 7.44 -10.86 -0.08 6.74 16 29 O -0.51 -8.39 16.74 5.55 0.09 -8.30 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.66 7.93 -51.92 -0.41 0.24 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 1.08 7.00 -51.93 -0.36 0.71 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.41 6.55 7.99 -40.82 -0.33 6.22 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.17 2.50 8.06 -52.48 -0.42 2.08 16 41 H 0.11 2.83 6.44 -51.93 -0.33 2.50 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.48 7.94 -51.93 -0.41 1.06 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -33.06 388.07 -8.24 -41.30 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.89 Total: 8.11 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: -1.67 Total: 17.11 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -0.68 Total: -70.03 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.18 Total: -18.08 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.06 -8.24 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069870439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.817 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds