Wall clock time and date at job start Wed Apr 1 2020 05:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46763 * 124.34659 * 2 1 4 4 C 1.54487 * 105.47467 * 162.98917 * 3 2 1 5 5 C 1.54626 * 101.76254 * 25.41291 * 4 3 2 6 6 H 1.08995 * 110.48947 * 94.01667 * 5 4 3 7 7 C 1.50704 * 110.48919 * 216.52873 * 5 4 3 8 8 O 1.21287 * 119.99537 * 359.97438 * 7 5 4 9 9 N 1.34768 * 120.00276 * 180.02562 * 7 5 4 10 10 C 1.46498 * 120.00131 * 179.97438 * 9 7 5 11 11 C 1.50695 * 109.47546 * 180.02562 * 10 9 7 12 12 C 1.40075 * 126.12631 * 259.97802 * 11 10 9 13 13 N 1.31010 * 108.25576 * 180.02562 * 12 11 10 14 14 N 1.39740 * 108.18048 * 0.14442 * 13 12 11 15 15 C 1.34641 * 126.12582 * 79.99769 * 11 10 9 16 16 C 1.50664 * 127.92541 * 359.73594 * 15 11 10 17 17 N 1.47495 * 107.19261 * 169.66614 * 16 15 11 18 18 C 1.36935 * 121.01629 * 222.89591 * 17 16 15 19 19 H 1.08000 * 120.00022 * 154.93188 * 18 17 16 20 20 C 1.38814 * 120.00008 * 334.66628 * 18 17 16 21 21 N 1.31621 * 119.99974 * 347.89444 * 20 18 17 22 22 Si 1.86800 * 120.00015 * 167.89342 * 20 18 17 23 23 H 1.48502 * 109.47298 * 60.00082 * 22 20 18 24 24 H 1.48505 * 109.46926 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47388 * 300.00245 * 22 20 18 26 26 C 1.47087 * 117.97442 * 42.62728 * 17 16 15 27 27 C 1.46550 * 127.32722 * 179.53882 * 14 13 12 28 28 C 1.34418 * 124.35261 * 180.02562 * 2 1 3 29 29 O 1.21284 * 124.93908 * 0.44287 * 28 2 1 30 30 H 1.09004 * 109.47568 * 90.00136 * 1 2 3 31 31 H 1.09009 * 109.47066 * 209.99834 * 1 2 3 32 32 H 1.09002 * 109.47261 * 329.99534 * 1 2 3 33 33 H 1.08995 * 110.24826 * 43.98832 * 3 2 1 34 34 H 1.09003 * 110.32282 * 282.02249 * 3 2 1 35 35 H 1.09003 * 110.96475 * 267.29772 * 4 3 2 36 36 H 1.08994 * 110.97509 * 143.53592 * 4 3 2 37 37 H 0.96999 * 120.00275 * 0.02562 * 9 7 5 38 38 H 1.09003 * 109.47135 * 59.99865 * 10 9 7 39 39 H 1.09006 * 109.47387 * 300.00367 * 10 9 7 40 40 H 1.08007 * 125.86995 * 0.09745 * 12 11 10 41 41 H 1.09005 * 109.91702 * 50.19849 * 16 15 11 42 42 H 1.08999 * 109.78441 * 289.06469 * 16 15 11 43 43 H 0.96994 * 119.99875 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.51177 * 56.59770 * 26 17 16 45 45 H 1.08999 * 109.51899 * 176.69914 * 26 17 16 46 46 H 1.09001 * 109.50809 * 41.53380 * 27 14 13 47 47 H 1.09001 * 109.50979 * 281.40354 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7010 0.7488 0.4356 5 6 3.6898 -0.7377 0.0100 6 1 4.1215 -0.8532 -0.9842 7 6 4.4403 -1.5785 1.0104 8 8 4.9463 -1.0577 1.9819 9 7 4.5501 -2.9089 0.8251 10 6 5.2802 -3.7261 1.7973 11 6 5.2560 -5.1682 1.3604 12 6 4.4063 -6.1664 1.8539 13 7 4.6839 -7.2858 1.2323 14 7 5.7193 -7.0369 0.3275 15 6 6.0475 -5.7279 0.4260 16 6 7.1218 -5.0642 -0.3959 17 7 7.8661 -6.1343 -1.0861 18 6 9.2330 -6.1056 -1.1644 19 1 9.7861 -7.0247 -1.2890 20 6 9.9072 -4.8945 -1.0891 21 7 9.2407 -3.7633 -1.1825 22 14 11.7603 -4.8702 -0.8552 23 1 12.4117 -5.5735 -1.9893 24 1 12.2347 -3.4638 -0.8073 25 1 12.1078 -5.5539 0.4164 26 6 7.0960 -7.2363 -1.6826 27 6 6.3604 -7.9969 -0.5754 28 6 2.2234 -1.1097 -0.0005 29 8 1.7946 -2.2442 -0.0087 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.8983 1.9383 0.7102 34 1 2.3308 1.6444 -0.9998 35 1 3.8269 0.8448 1.5140 36 1 4.4753 1.3011 -0.0967 37 1 4.1464 -3.3252 0.0475 38 1 4.8087 -3.6346 2.7758 39 1 6.3129 -3.3826 1.8582 40 1 3.6513 -6.0355 2.6150 41 1 7.7936 -4.5036 0.2541 42 1 6.6669 -4.3962 -1.1273 43 1 9.7118 -2.9171 -1.1295 44 1 6.3701 -6.8328 -2.3886 45 1 7.7729 -7.9134 -2.2036 46 1 5.6021 -8.6433 -1.0173 47 1 7.0742 -8.6018 -0.0162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069870439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:39 Heat of formation + Delta-G solvation = 19.259502 kcal Electronic energy + Delta-G solvation = -31166.865932 eV Core-core repulsion = 26965.313964 eV Total energy + Delta-G solvation = -4201.551969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.47440 -41.90811 -39.96820 -37.98414 -37.54973 -36.11126 -34.64521 -33.86905 -32.87926 -31.84662 -30.49696 -28.95725 -27.83619 -27.62935 -26.20878 -25.13495 -23.49058 -23.12496 -21.73672 -21.60248 -20.60032 -19.94755 -18.60114 -18.54112 -17.95928 -17.57672 -17.34050 -16.93872 -16.69060 -16.37570 -16.17787 -15.73519 -15.48783 -15.26984 -15.05141 -14.85419 -14.75709 -14.70177 -14.52491 -14.01027 -13.87387 -13.71528 -13.41803 -13.33536 -13.14862 -13.08152 -12.94320 -12.73713 -12.66689 -12.59908 -12.36854 -12.04835 -12.00087 -11.91297 -11.65339 -11.19550 -10.91142 -10.77591 -10.08015 -10.04376 -9.74256 -9.41049 -8.93594 -7.96842 -5.43144 0.90644 1.24211 1.47541 1.50189 1.53973 1.55760 1.59857 1.64894 2.07819 2.45717 2.52895 3.22082 3.23059 3.39172 3.42637 3.58312 3.81530 3.84452 3.98657 4.11328 4.17401 4.19983 4.22253 4.35825 4.38420 4.43506 4.44901 4.66069 4.70558 4.74673 4.76457 4.87157 4.87770 4.91379 5.00932 5.02406 5.17946 5.21855 5.36672 5.43228 5.51646 5.58482 5.71611 5.96687 6.08362 6.21836 6.52158 6.77258 6.99970 7.00510 7.16023 7.65223 8.17470 9.12392 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011245 B = 0.003271 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.426353 B = 8559.098123 C =10110.083480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.619 5.619 3 C 0.104 3.896 4 C -0.113 4.113 5 C -0.149 4.149 6 H 0.150 0.850 7 C 0.525 3.475 8 O -0.572 6.572 9 N -0.704 5.704 10 C 0.216 3.784 11 C -0.277 4.277 12 C 0.064 3.936 13 N -0.327 5.327 14 N -0.367 5.367 15 C 0.097 3.903 16 C 0.250 3.750 17 N -0.615 5.615 18 C -0.271 4.271 19 H 0.079 0.921 20 C -0.042 4.042 21 N -0.931 5.931 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.294 1.294 25 H -0.282 1.282 26 C 0.128 3.872 27 C 0.116 3.884 28 C 0.518 3.482 29 O -0.559 6.559 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.406 0.594 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.209 0.791 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.254 0.746 44 H 0.038 0.962 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 9.189 0.440 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.352 5.352 3 C -0.018 4.018 4 C -0.150 4.150 5 C -0.174 4.174 6 H 0.167 0.833 7 C 0.311 3.689 8 O -0.452 6.452 9 N -0.353 5.353 10 C 0.092 3.908 11 C -0.289 4.289 12 C -0.122 4.122 13 N -0.147 5.147 14 N -0.148 5.148 15 C -0.035 4.035 16 C 0.124 3.876 17 N -0.339 5.339 18 C -0.400 4.400 19 H 0.097 0.903 20 C -0.238 4.238 21 N -0.576 5.576 22 Si 0.798 3.202 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.209 1.209 26 C 0.002 3.998 27 C -0.006 4.006 28 C 0.305 3.695 29 O -0.438 6.438 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.241 0.759 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.226 0.774 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.120 0.880 46 H 0.129 0.871 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.689 7.730 0.885 17.512 hybrid contribution 1.124 0.506 -0.181 1.246 sum -14.565 8.236 0.704 16.747 Atomic orbital electron populations 1.21755 0.76312 1.03952 1.02933 1.48280 1.07661 1.07309 1.71930 1.22440 0.88636 0.86327 1.04351 1.22656 0.98445 0.90005 1.03944 1.22240 0.93909 0.98915 1.02297 0.83289 1.20259 0.79906 0.82471 0.86246 1.90661 1.49891 1.72715 1.31909 1.46141 1.54475 1.07110 1.27558 1.19194 0.95789 0.84223 0.91557 1.19551 1.05449 0.97265 1.06661 1.24190 0.99254 0.89112 0.99630 1.77138 1.06201 1.24240 1.07103 1.48697 1.27326 1.07600 1.31224 1.22194 0.97525 0.86105 0.97653 1.19300 0.87738 0.88777 0.91832 1.44394 1.02915 1.23990 1.62568 1.19471 0.81840 0.92837 1.45827 0.90340 1.25777 1.02121 0.95296 1.00594 1.70057 1.36219 0.97066 1.54273 0.85311 0.80304 0.76350 0.78261 1.19753 1.21968 1.20869 1.21413 0.94938 0.90990 0.92508 1.22542 0.96699 0.90654 0.90744 1.20529 0.88589 0.84812 0.75589 1.90738 1.78746 1.22460 1.51879 0.91358 0.92366 0.87758 0.87388 0.88001 0.89706 0.86367 0.75913 0.90220 0.92911 0.77399 0.90497 0.94823 0.93711 0.94384 0.88024 0.87111 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 10.96 127.77 1.40 2.56 16 2 N -0.62 -10.74 3.33 -842.88 -2.81 -13.55 16 3 C 0.10 1.09 7.35 86.83 0.64 1.73 16 4 C -0.11 -1.83 6.48 31.65 0.21 -1.63 16 5 C -0.15 -3.50 3.32 -11.55 -0.04 -3.54 16 6 H 0.15 3.04 8.14 -2.39 -0.02 3.02 16 7 C 0.53 16.92 7.12 87.66 0.62 17.54 16 8 O -0.57 -21.37 15.49 -3.05 -0.05 -21.42 16 9 N -0.70 -23.60 5.28 -466.79 -2.47 -26.07 16 10 C 0.22 7.66 5.95 85.63 0.51 8.17 16 11 C -0.28 -10.32 5.46 -20.24 -0.11 -10.43 16 12 C 0.06 2.20 11.97 85.26 1.02 3.22 16 13 N -0.33 -12.32 12.61 -56.79 -0.72 -13.04 16 14 N -0.37 -14.44 4.03 -334.61 -1.35 -15.79 16 15 C 0.10 4.05 6.70 41.19 0.28 4.33 16 16 C 0.25 11.94 5.06 85.43 0.43 12.37 16 17 N -0.62 -29.40 3.02 -702.02 -2.12 -31.52 16 18 C -0.27 -14.00 9.67 84.03 0.81 -13.18 16 19 H 0.08 3.87 7.86 -2.91 -0.02 3.85 16 20 C -0.04 -2.21 5.08 84.86 0.43 -1.78 16 21 N -0.93 -52.00 10.95 21.65 0.24 -51.76 16 22 Si 0.97 43.22 29.57 68.60 2.03 45.25 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.13 4.82 6.49 86.32 0.56 5.38 16 27 C 0.12 3.93 7.44 86.42 0.64 4.58 16 28 C 0.52 13.17 7.44 87.90 0.65 13.83 16 29 O -0.56 -18.52 16.74 -3.04 -0.05 -18.57 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.96 7.93 -2.38 -0.02 0.94 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 1.72 7.00 -2.39 -0.02 1.70 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.41 13.62 7.99 -92.71 -0.74 12.88 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.21 5.47 8.06 -2.91 -0.02 5.45 16 41 H 0.08 4.17 6.44 -2.38 -0.02 4.15 16 42 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.25 13.90 8.31 -92.71 -0.77 13.12 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.10 3.42 7.94 -2.39 -0.02 3.40 16 46 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 47 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -73.65 388.07 1.03 -72.63 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.26 Total: 30.70 kcal Atomic # 6 Polarization: 35.08 SS G_CDS: 8.06 Total: 43.14 kcal Atomic # 7 Polarization: -142.50 SS G_CDS: -9.22 Total: -151.72 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.10 Total: -39.99 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -73.65 1.03 -72.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069870439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.888 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds