Wall clock time and date at job start Wed Apr 1 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34416 * 124.35149 * 2 1 4 4 O 1.21290 * 124.94380 * 0.39916 * 3 2 1 5 5 C 1.51280 * 110.11654 * 180.38601 * 3 2 1 6 6 C 1.54626 * 104.19633 * 16.24485 * 5 3 2 7 7 C 1.46761 * 124.34480 * 179.97438 * 2 1 3 8 8 H 1.09004 * 110.24419 * 282.08964 * 7 2 1 9 9 C 1.50696 * 110.24808 * 44.00856 * 7 2 1 10 10 O 1.21276 * 120.00216 * 18.54266 * 9 7 2 11 11 N 1.34773 * 119.99804 * 198.54316 * 9 7 2 12 12 C 1.46504 * 119.99833 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47095 * 179.97438 * 12 11 9 14 14 C 1.40066 * 126.12420 * 260.02071 * 13 12 11 15 15 N 1.31017 * 108.25528 * 180.02562 * 14 13 12 16 16 N 1.39750 * 108.17432 * 0.14520 * 15 14 13 17 17 C 1.34643 * 126.12209 * 79.99801 * 13 12 11 18 18 C 1.51036 * 127.91418 * 359.46398 * 17 13 12 19 19 N 1.47496 * 107.03367 * 169.70381 * 18 17 13 20 20 C 1.36942 * 120.99987 * 222.89965 * 19 18 17 21 21 H 1.08002 * 119.99477 * 155.15817 * 20 19 18 22 22 C 1.38806 * 120.00372 * 335.15401 * 20 19 18 23 23 N 1.31618 * 120.00186 * 159.86258 * 22 20 19 24 24 Si 1.86803 * 120.00188 * 339.87032 * 22 20 19 25 25 H 1.48500 * 109.46917 * 88.37889 * 24 22 20 26 26 H 1.48492 * 109.47210 * 208.38152 * 24 22 20 27 27 H 1.48502 * 109.46862 * 328.38416 * 24 22 20 28 28 C 1.47082 * 117.98979 * 42.84059 * 19 18 17 29 29 C 1.46556 * 127.32229 * 179.54402 * 16 15 14 30 30 H 1.09002 * 109.47542 * 270.03090 * 1 2 3 31 31 H 1.09003 * 109.46735 * 30.02722 * 1 2 3 32 32 H 1.08993 * 109.47270 * 150.03021 * 1 2 3 33 33 H 1.09001 * 110.49057 * 134.92703 * 5 3 2 34 34 H 1.09004 * 110.48080 * 257.56984 * 5 3 2 35 35 H 1.09001 * 110.97284 * 217.08338 * 6 5 3 36 36 H 1.09003 * 110.96816 * 93.32221 * 6 5 3 37 37 H 0.97000 * 120.00585 * 0.02562 * 11 9 7 38 38 H 1.08996 * 109.47043 * 59.99840 * 12 11 9 39 39 H 1.09001 * 109.46702 * 299.99418 * 12 11 9 40 40 H 1.08001 * 125.87573 * 0.02562 * 14 13 12 41 41 H 1.09001 * 109.94620 * 289.03313 * 18 17 13 42 42 H 1.08996 * 109.94950 * 50.20278 * 18 17 13 43 43 H 0.96997 * 120.00356 * 179.97438 * 23 22 20 44 44 H 1.08992 * 109.51825 * 176.57499 * 28 19 18 45 45 H 1.09005 * 109.51119 * 56.47246 * 28 19 18 46 46 H 1.08998 * 109.50623 * 41.43374 * 29 16 15 47 47 H 1.08996 * 109.51209 * 281.28806 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2443 0.0069 5 6 3.6898 0.7378 -0.0096 6 6 3.7011 -0.7489 -0.4346 7 6 2.2930 -1.2117 0.0005 8 1 2.3289 -1.6436 1.0008 9 6 1.7476 -2.2165 -0.9813 10 8 0.9881 -1.8586 -1.8564 11 7 2.1040 -3.5128 -0.8869 12 6 1.5743 -4.4895 -1.8417 13 6 2.1235 -5.8555 -1.5200 14 6 3.1905 -6.4902 -2.1685 15 7 3.3724 -7.6611 -1.6096 16 7 2.4266 -7.8099 -0.5915 17 6 1.6768 -6.6841 -0.5573 18 6 0.5498 -6.4487 0.4203 19 7 0.2874 -7.7339 1.0947 20 6 -0.9931 -8.1677 1.3124 21 1 -1.1944 -9.2231 1.4222 22 6 -2.0324 -7.2510 1.3919 23 7 -3.2738 -7.6456 1.2033 24 14 -1.6692 -5.4573 1.7664 25 1 -1.4092 -4.7297 0.4982 26 1 -2.8356 -4.8495 2.4556 27 1 -0.4739 -5.3669 2.6429 28 6 1.4426 -8.5361 1.5252 29 6 2.2487 -8.9637 0.2943 30 1 -0.3634 0.0006 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5133 33 1 4.2329 1.3456 -0.7332 34 1 4.1191 0.8532 0.9857 35 1 4.4753 -1.3011 0.0981 36 1 3.8273 -0.8453 -1.5130 37 1 2.7112 -3.7992 -0.1868 38 1 1.8709 -4.2077 -2.8520 39 1 0.4865 -4.5099 -1.7748 40 1 3.7645 -6.0843 -2.9884 41 1 0.8445 -5.6983 1.1539 42 1 -0.3416 -6.1177 -0.1124 43 1 -4.0001 -7.0051 1.2592 44 1 1.0936 -9.4208 2.0576 45 1 2.0743 -7.9403 2.1841 46 1 3.2240 -9.3355 0.6082 47 1 1.7119 -9.7504 -0.2359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069870864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:43 Heat of formation + Delta-G solvation = 51.494206 kcal Electronic energy + Delta-G solvation = -31344.873246 eV Core-core repulsion = 27144.719079 eV Total energy + Delta-G solvation = -4200.154167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.37334 -41.04540 -39.15687 -36.74211 -36.41994 -35.14638 -33.25363 -32.94066 -31.83314 -30.63612 -29.79682 -28.31588 -26.80230 -26.21140 -25.17136 -23.87699 -22.80192 -21.91840 -20.83323 -20.33931 -19.64177 -18.95686 -17.91281 -17.16754 -16.93605 -16.47411 -16.09156 -15.98006 -15.50189 -15.44780 -15.03545 -14.90472 -14.28384 -14.13529 -14.10029 -13.92710 -13.74236 -13.65375 -13.31121 -13.00034 -12.95717 -12.78193 -12.73624 -12.37495 -12.19114 -12.09679 -11.91855 -11.74188 -11.52377 -11.51048 -10.89451 -10.63440 -10.54916 -10.40729 -10.24296 -10.00552 -9.78431 -9.14522 -8.98871 -8.94378 -8.91417 -8.27005 -7.43873 -6.19755 -3.61393 2.06636 2.29770 2.35501 2.58064 2.71294 2.82121 3.11153 3.23979 3.31335 3.36620 3.96063 4.03634 4.26762 4.37968 4.46405 4.57164 4.66099 4.71753 4.86767 4.97219 5.12182 5.19529 5.20386 5.26827 5.30305 5.35992 5.43324 5.45979 5.46140 5.51347 5.52578 5.76728 5.81368 5.85667 5.91498 6.05617 6.10656 6.17808 6.25034 6.32407 6.33320 6.79260 6.84592 7.22141 7.37859 7.51853 7.91011 7.93727 8.04046 8.05590 8.56360 9.39818 9.68932 10.95208 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.003644 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.958155 B = 7682.391332 C = 9407.901730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.599 5.599 3 C 0.518 3.482 4 O -0.532 6.532 5 C -0.153 4.153 6 C -0.119 4.119 7 C 0.110 3.890 8 H 0.105 0.895 9 C 0.504 3.496 10 O -0.527 6.527 11 N -0.716 5.716 12 C 0.206 3.794 13 C -0.283 4.283 14 C 0.060 3.940 15 N -0.307 5.307 16 N -0.352 5.352 17 C 0.122 3.878 18 C 0.176 3.824 19 N -0.605 5.605 20 C -0.274 4.274 21 H 0.094 0.906 22 C 0.032 3.968 23 N -0.897 5.897 24 Si 0.874 3.126 25 H -0.281 1.281 26 H -0.296 1.296 27 H -0.271 1.271 28 C 0.132 3.868 29 C 0.112 3.888 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.402 0.598 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.179 0.821 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.267 0.733 44 H 0.095 0.905 45 H 0.041 0.959 46 H 0.086 0.914 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.487 8.248 -1.192 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.332 5.332 3 C 0.306 3.694 4 O -0.408 6.408 5 C -0.193 4.193 6 C -0.157 4.157 7 C 0.002 3.998 8 H 0.123 0.877 9 C 0.288 3.712 10 O -0.403 6.403 11 N -0.368 5.368 12 C 0.082 3.918 13 C -0.295 4.295 14 C -0.127 4.127 15 N -0.127 5.127 16 N -0.133 5.133 17 C -0.010 4.010 18 C 0.049 3.951 19 N -0.329 5.329 20 C -0.402 4.402 21 H 0.111 0.889 22 C -0.169 4.169 23 N -0.538 5.538 24 Si 0.703 3.297 25 H -0.208 1.208 26 H -0.224 1.224 27 H -0.196 1.196 28 C 0.004 3.996 29 C -0.011 4.011 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.236 0.764 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.196 0.804 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.059 0.941 46 H 0.104 0.896 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.054 7.866 -1.722 17.960 hybrid contribution -0.183 1.283 0.477 1.381 sum 15.871 9.148 -1.245 18.361 Atomic orbital electron populations 1.21728 0.77115 1.04608 1.01643 1.47843 1.06915 1.05612 1.72871 1.20838 0.89208 0.84183 0.75157 1.90732 1.78730 1.20816 1.50536 1.22357 0.94877 0.96994 1.05052 1.22597 0.93988 0.95591 1.03525 1.21684 0.91958 0.86510 0.99687 0.87737 1.20575 0.81752 0.83119 0.85800 1.90726 1.35002 1.79282 1.35308 1.46252 1.49244 1.07121 1.34195 1.19398 0.98067 0.82416 0.91888 1.19411 1.05633 0.99501 1.04995 1.23702 0.97038 0.92152 0.99807 1.77247 1.12784 1.19500 1.03175 1.48538 1.24175 1.14025 1.26530 1.21834 0.94528 0.87174 0.97484 1.20524 0.93467 0.89863 0.91205 1.44489 1.02982 1.19611 1.65793 1.18869 0.80484 0.93966 1.46848 0.88871 1.25210 0.94937 0.97806 0.98944 1.69800 0.98960 1.35188 1.49823 0.87152 0.77368 0.86549 0.78610 1.20813 1.22371 1.19626 1.21325 0.88884 0.97373 0.91998 1.22574 1.01333 0.85805 0.91432 0.92685 0.90522 0.89531 0.87558 0.87353 0.88007 0.89200 0.76427 0.90581 0.90850 0.80370 0.92835 0.88157 0.92249 0.88687 0.94141 0.89581 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 10.43 59.85 0.62 1.77 16 2 N -0.60 -7.17 3.00 -174.02 -0.52 -7.70 16 3 C 0.52 6.38 8.02 -10.86 -0.09 6.30 16 4 O -0.53 -8.63 17.60 5.55 0.10 -8.54 16 5 C -0.15 -1.11 6.86 -26.74 -0.18 -1.29 16 6 C -0.12 -0.74 6.68 -25.10 -0.17 -0.91 16 7 C 0.11 1.02 3.71 -68.16 -0.25 0.77 16 8 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 9 C 0.50 6.09 6.53 -10.99 -0.07 6.02 16 10 O -0.53 -8.39 14.59 5.56 0.08 -8.31 16 11 N -0.72 -7.99 5.55 -61.47 -0.34 -8.33 16 12 C 0.21 2.73 5.95 -5.19 -0.03 2.70 16 13 C -0.28 -4.12 5.46 -105.21 -0.57 -4.69 16 14 C 0.06 0.82 11.97 -17.21 -0.21 0.61 16 15 N -0.31 -4.93 12.61 30.70 0.39 -4.54 16 16 N -0.35 -5.90 4.03 -56.95 -0.23 -6.13 16 17 C 0.12 2.09 6.71 -82.17 -0.55 1.54 16 18 C 0.18 3.44 4.24 -4.48 -0.02 3.42 16 19 N -0.61 -12.76 2.81 -173.00 -0.49 -13.25 16 20 C -0.27 -6.96 10.10 -15.06 -0.15 -7.11 16 21 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 22 C 0.03 0.84 5.26 -17.43 -0.09 0.75 16 23 N -0.90 -25.81 13.97 55.49 0.78 -25.03 16 24 Si 0.87 20.24 24.15 -169.99 -4.11 16.14 16 25 H -0.28 -6.27 6.47 56.52 0.37 -5.90 16 26 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.27 -6.00 6.61 56.52 0.37 -5.62 16 28 C 0.13 2.15 6.49 -3.61 -0.02 2.13 16 29 C 0.11 1.66 7.44 -3.90 -0.03 1.63 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 32 H 0.09 1.20 5.98 -51.93 -0.31 0.89 16 33 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 37 H 0.40 3.64 8.46 -40.82 -0.35 3.29 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.05 1.01 6.41 -51.93 -0.33 0.68 16 42 H 0.10 2.19 5.13 -51.93 -0.27 1.93 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.09 1.45 7.94 -51.93 -0.41 1.03 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -34.58 379.94 -7.20 -41.78 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.76 Total: 4.56 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: -1.82 Total: 13.63 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.42 Total: -64.98 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.84 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.11 Total: 16.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.58 -7.20 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069870864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.272 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds