Wall clock time and date at job start Wed Apr 1 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34416 * 124.35149 * 2 1 4 4 O 1.21290 * 124.94380 * 0.39916 * 3 2 1 5 5 C 1.51280 * 110.11654 * 180.38601 * 3 2 1 6 6 C 1.54626 * 104.19633 * 16.24485 * 5 3 2 7 7 C 1.46761 * 124.34480 * 179.97438 * 2 1 3 8 8 H 1.09004 * 110.24419 * 282.08964 * 7 2 1 9 9 C 1.50696 * 110.24808 * 44.00856 * 7 2 1 10 10 O 1.21276 * 120.00216 * 18.54266 * 9 7 2 11 11 N 1.34773 * 119.99804 * 198.54316 * 9 7 2 12 12 C 1.46504 * 119.99833 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47095 * 179.97438 * 12 11 9 14 14 C 1.40066 * 126.12420 * 260.02071 * 13 12 11 15 15 N 1.31017 * 108.25528 * 180.02562 * 14 13 12 16 16 N 1.39750 * 108.17432 * 0.14520 * 15 14 13 17 17 C 1.34643 * 126.12209 * 79.99801 * 13 12 11 18 18 C 1.51036 * 127.91418 * 359.46398 * 17 13 12 19 19 N 1.47496 * 107.03367 * 169.70381 * 18 17 13 20 20 C 1.36942 * 120.99987 * 222.89965 * 19 18 17 21 21 H 1.08002 * 119.99477 * 155.15817 * 20 19 18 22 22 C 1.38806 * 120.00372 * 335.15401 * 20 19 18 23 23 N 1.31618 * 120.00186 * 159.86258 * 22 20 19 24 24 Si 1.86803 * 120.00188 * 339.87032 * 22 20 19 25 25 H 1.48500 * 109.46917 * 88.37889 * 24 22 20 26 26 H 1.48492 * 109.47210 * 208.38152 * 24 22 20 27 27 H 1.48502 * 109.46862 * 328.38416 * 24 22 20 28 28 C 1.47082 * 117.98979 * 42.84059 * 19 18 17 29 29 C 1.46556 * 127.32229 * 179.54402 * 16 15 14 30 30 H 1.09002 * 109.47542 * 270.03090 * 1 2 3 31 31 H 1.09003 * 109.46735 * 30.02722 * 1 2 3 32 32 H 1.08993 * 109.47270 * 150.03021 * 1 2 3 33 33 H 1.09001 * 110.49057 * 134.92703 * 5 3 2 34 34 H 1.09004 * 110.48080 * 257.56984 * 5 3 2 35 35 H 1.09001 * 110.97284 * 217.08338 * 6 5 3 36 36 H 1.09003 * 110.96816 * 93.32221 * 6 5 3 37 37 H 0.97000 * 120.00585 * 0.02562 * 11 9 7 38 38 H 1.08996 * 109.47043 * 59.99840 * 12 11 9 39 39 H 1.09001 * 109.46702 * 299.99418 * 12 11 9 40 40 H 1.08001 * 125.87573 * 0.02562 * 14 13 12 41 41 H 1.09001 * 109.94620 * 289.03313 * 18 17 13 42 42 H 1.08996 * 109.94950 * 50.20278 * 18 17 13 43 43 H 0.96997 * 120.00356 * 179.97438 * 23 22 20 44 44 H 1.08992 * 109.51825 * 176.57499 * 28 19 18 45 45 H 1.09005 * 109.51119 * 56.47246 * 28 19 18 46 46 H 1.08998 * 109.50623 * 41.43374 * 29 16 15 47 47 H 1.08996 * 109.51209 * 281.28806 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2443 0.0069 5 6 3.6898 0.7378 -0.0096 6 6 3.7011 -0.7489 -0.4346 7 6 2.2930 -1.2117 0.0005 8 1 2.3289 -1.6436 1.0008 9 6 1.7476 -2.2165 -0.9813 10 8 0.9881 -1.8586 -1.8564 11 7 2.1040 -3.5128 -0.8869 12 6 1.5743 -4.4895 -1.8417 13 6 2.1235 -5.8555 -1.5200 14 6 3.1905 -6.4902 -2.1685 15 7 3.3724 -7.6611 -1.6096 16 7 2.4266 -7.8099 -0.5915 17 6 1.6768 -6.6841 -0.5573 18 6 0.5498 -6.4487 0.4203 19 7 0.2874 -7.7339 1.0947 20 6 -0.9931 -8.1677 1.3124 21 1 -1.1944 -9.2231 1.4222 22 6 -2.0324 -7.2510 1.3919 23 7 -3.2738 -7.6456 1.2033 24 14 -1.6692 -5.4573 1.7664 25 1 -1.4092 -4.7297 0.4982 26 1 -2.8356 -4.8495 2.4556 27 1 -0.4739 -5.3669 2.6429 28 6 1.4426 -8.5361 1.5252 29 6 2.2487 -8.9637 0.2943 30 1 -0.3634 0.0006 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5133 33 1 4.2329 1.3456 -0.7332 34 1 4.1191 0.8532 0.9857 35 1 4.4753 -1.3011 0.0981 36 1 3.8273 -0.8453 -1.5130 37 1 2.7112 -3.7992 -0.1868 38 1 1.8709 -4.2077 -2.8520 39 1 0.4865 -4.5099 -1.7748 40 1 3.7645 -6.0843 -2.9884 41 1 0.8445 -5.6983 1.1539 42 1 -0.3416 -6.1177 -0.1124 43 1 -4.0001 -7.0051 1.2592 44 1 1.0936 -9.4208 2.0576 45 1 2.0743 -7.9403 2.1841 46 1 3.2240 -9.3355 0.6082 47 1 1.7119 -9.7504 -0.2359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069870864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:40 Heat of formation + Delta-G solvation = 24.574590 kcal Electronic energy + Delta-G solvation = -31346.040568 eV Core-core repulsion = 27144.719079 eV Total energy + Delta-G solvation = -4201.321489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.55656 -41.93413 -40.14737 -38.23486 -37.37932 -36.22542 -34.69901 -33.83457 -33.35236 -32.05273 -30.92481 -29.28232 -27.74930 -27.68730 -26.38109 -25.31780 -23.54745 -23.25840 -21.76286 -21.57265 -20.60880 -20.28462 -18.82218 -18.68481 -18.04604 -17.66621 -17.17448 -16.98915 -16.87568 -16.64299 -16.25671 -16.04453 -15.63569 -15.30978 -15.09323 -14.98716 -14.82042 -14.72781 -14.57224 -14.48627 -14.09808 -13.90360 -13.69007 -13.49359 -13.33198 -13.10736 -13.04481 -12.97706 -12.80795 -12.41253 -12.32722 -12.16660 -12.05465 -11.79946 -11.60230 -11.21573 -10.94643 -10.88897 -10.18586 -10.14384 -9.86767 -9.48572 -9.18771 -8.24415 -5.61426 0.81972 1.24934 1.34356 1.36637 1.42917 1.46778 1.53027 1.61057 1.92350 2.33503 2.41632 2.85560 3.17096 3.26497 3.41258 3.53654 3.57855 3.72073 3.98896 4.05729 4.08863 4.11290 4.17325 4.25104 4.26262 4.37136 4.38735 4.41630 4.46382 4.56687 4.71709 4.74774 4.79792 4.82846 4.89620 4.97696 4.98305 5.05625 5.12703 5.28865 5.36273 5.68160 5.71946 5.96161 5.99296 6.04995 6.50705 6.67943 6.77686 7.00976 7.16668 7.44189 7.80590 8.94206 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.003644 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.958155 B = 7682.391332 C = 9407.901730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.607 5.607 3 C 0.504 3.496 4 O -0.584 6.584 5 C -0.140 4.140 6 C -0.106 4.106 7 C 0.107 3.893 8 H 0.135 0.865 9 C 0.503 3.497 10 O -0.572 6.572 11 N -0.704 5.704 12 C 0.211 3.789 13 C -0.266 4.266 14 C 0.072 3.928 15 N -0.320 5.320 16 N -0.363 5.363 17 C 0.097 3.903 18 C 0.181 3.819 19 N -0.622 5.622 20 C -0.255 4.255 21 H 0.065 0.935 22 C -0.028 4.028 23 N -0.950 5.950 24 Si 0.933 3.067 25 H -0.274 1.274 26 H -0.312 1.312 27 H -0.247 1.247 28 C 0.130 3.870 29 C 0.115 3.885 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.416 0.584 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.263 0.737 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.121 0.879 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.032 8.750 -0.836 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.340 5.340 3 C 0.294 3.706 4 O -0.464 6.464 5 C -0.180 4.180 6 C -0.144 4.144 7 C 0.000 4.000 8 H 0.152 0.848 9 C 0.289 3.711 10 O -0.451 6.451 11 N -0.356 5.356 12 C 0.087 3.913 13 C -0.278 4.278 14 C -0.114 4.114 15 N -0.140 5.140 16 N -0.144 5.144 17 C -0.034 4.034 18 C 0.054 3.946 19 N -0.346 5.346 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.224 4.224 23 N -0.595 5.595 24 Si 0.761 3.239 25 H -0.201 1.201 26 H -0.241 1.241 27 H -0.171 1.171 28 C 0.004 3.996 29 C -0.007 4.007 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.104 0.896 37 H 0.252 0.748 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.235 0.765 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.139 0.861 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.702 8.321 -1.341 22.352 hybrid contribution -1.560 1.013 0.278 1.881 sum 19.141 9.333 -1.063 21.322 Atomic orbital electron populations 1.21610 0.78496 1.03169 1.01888 1.48072 1.06685 1.06936 1.72299 1.21834 0.91498 0.83387 0.73874 1.90696 1.80069 1.22795 1.52843 1.22419 0.90812 0.97655 1.07106 1.22721 0.92777 0.94978 1.03908 1.22009 0.92907 0.84786 1.00269 0.84752 1.21102 0.80892 0.83535 0.85593 1.90720 1.37026 1.80004 1.37331 1.46060 1.49032 1.06495 1.34061 1.19234 0.96377 0.82500 0.93207 1.19500 1.05172 0.99438 1.03698 1.24291 0.96375 0.90969 0.99795 1.77251 1.12909 1.20581 1.03271 1.48687 1.24450 1.14095 1.27181 1.21547 0.94843 0.88604 0.98438 1.20311 0.93338 0.89257 0.91654 1.44581 1.02703 1.20680 1.66643 1.18821 0.82573 0.92783 1.44191 0.91704 1.25822 0.94701 1.01876 0.99953 1.69942 1.00073 1.36490 1.53035 0.86184 0.77221 0.81746 0.78711 1.20097 1.24081 1.17131 1.21536 0.87597 0.97306 0.93178 1.22529 1.02671 0.85124 0.90397 0.91576 0.91885 0.91029 0.86438 0.84510 0.83641 0.89630 0.74756 0.89204 0.93854 0.76522 0.91686 0.91189 0.92797 0.88133 0.91833 0.86142 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.32 10.43 127.77 1.33 3.65 16 2 N -0.61 -13.75 3.00 -823.08 -2.47 -16.22 16 3 C 0.50 11.74 8.02 87.90 0.71 12.44 16 4 O -0.58 -19.10 17.60 -3.06 -0.05 -19.15 16 5 C -0.14 -1.50 6.86 30.59 0.21 -1.29 16 6 C -0.11 -0.82 6.68 31.65 0.21 -0.61 16 7 C 0.11 1.64 3.71 44.70 0.17 1.80 16 8 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 9 C 0.50 11.04 6.53 87.66 0.57 11.61 16 10 O -0.57 -17.89 14.59 -3.02 -0.04 -17.94 16 11 N -0.70 -13.55 5.55 -466.79 -2.59 -16.14 16 12 C 0.21 5.16 5.95 85.63 0.51 5.66 16 13 C -0.27 -6.96 5.46 -20.24 -0.11 -7.07 16 14 C 0.07 1.67 11.97 85.26 1.02 2.69 16 15 N -0.32 -9.14 12.61 -56.80 -0.72 -9.85 16 16 N -0.36 -11.17 4.03 -334.10 -1.35 -12.52 16 17 C 0.10 3.12 6.71 41.30 0.28 3.40 16 18 C 0.18 6.81 4.24 85.55 0.36 7.18 16 19 N -0.62 -25.70 2.81 -701.24 -1.97 -27.67 16 20 C -0.25 -13.16 10.10 84.03 0.85 -12.32 16 21 H 0.07 3.64 8.06 -2.91 -0.02 3.61 16 22 C -0.03 -1.52 5.26 84.86 0.45 -1.07 16 23 N -0.95 -57.15 13.97 21.65 0.30 -56.85 16 24 Si 0.93 42.57 24.15 68.60 1.66 44.23 16 25 H -0.27 -12.06 6.47 99.48 0.64 -11.42 16 26 H -0.31 -14.92 7.11 99.48 0.71 -14.22 16 27 H -0.25 -10.17 6.61 99.48 0.66 -9.52 16 28 C 0.13 3.96 6.49 86.34 0.56 4.53 16 29 C 0.12 3.14 7.44 86.44 0.64 3.78 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.73 7.93 -2.39 -0.02 1.72 16 32 H 0.07 2.04 5.98 -2.39 -0.01 2.03 16 33 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.09 0.80 7.90 -2.39 -0.02 0.78 16 37 H 0.42 5.72 8.46 -92.71 -0.78 4.94 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.22 3.19 8.06 -2.91 -0.02 3.16 16 41 H 0.07 2.28 6.41 -2.39 -0.02 2.27 16 42 H 0.07 3.06 5.13 -2.39 -0.01 3.05 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.10 2.92 7.94 -2.39 -0.02 2.90 16 45 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -80.70 379.94 0.63 -80.07 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.11 Total: 17.65 kcal Atomic # 6 Polarization: 26.64 SS G_CDS: 7.75 Total: 34.39 kcal Atomic # 7 Polarization: -130.46 SS G_CDS: -8.79 Total: -139.25 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.10 Total: -37.09 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.66 Total: 44.23 kcal Total: -80.70 0.63 -80.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069870864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.641 kcal (2) G-P(sol) polarization free energy of solvation -80.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds