Wall clock time and date at job start Wed Apr 1 2020 05:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35040 * 126.39610 * 2 1 4 4 N 1.30504 * 108.69947 * 179.97438 * 3 2 1 5 5 C 1.34127 * 109.25188 * 359.97438 * 4 3 2 6 6 C 1.50709 * 125.98486 * 180.02562 * 5 4 3 7 7 H 1.08996 * 110.91141 * 331.12168 * 6 5 4 8 8 C 1.54908 * 111.00381 * 207.21899 * 6 5 4 9 9 N 1.47415 * 104.83313 * 204.91348 * 8 6 5 10 10 C 1.34772 * 125.65206 * 204.09193 * 9 8 6 11 11 O 1.21286 * 120.00036 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00510 * 180.02562 * 10 9 8 13 13 H 1.09005 * 110.21217 * 318.07202 * 12 10 9 14 14 C 1.54484 * 110.24784 * 79.99622 * 12 10 9 15 15 C 1.54626 * 101.76053 * 93.58631 * 14 12 10 16 16 C 1.51288 * 104.19788 * 24.79858 * 15 14 12 17 17 O 1.21286 * 124.94144 * 163.70458 * 16 15 14 18 18 N 1.34414 * 110.11452 * 343.75058 * 16 15 14 19 19 C 1.47026 * 108.70097 * 24.12967 * 9 8 6 20 20 C 1.54319 * 107.27305 * 358.93997 * 19 9 8 21 21 H 1.09004 * 110.71894 * 96.34703 * 20 19 9 22 22 N 1.46498 * 110.71865 * 219.44531 * 20 19 9 23 23 C 1.36943 * 119.99752 * 273.26644 * 22 20 19 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 20 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 20 26 26 N 1.31624 * 119.99698 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00072 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47159 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47290 * 120.00044 * 27 25 23 30 30 H 1.48503 * 109.47163 * 240.00049 * 27 25 23 31 31 C 1.34664 * 108.02844 * 0.26169 * 5 4 3 32 32 H 1.09003 * 109.46927 * 90.03098 * 1 2 3 33 33 H 1.09006 * 109.47143 * 210.02057 * 1 2 3 34 34 H 1.08990 * 109.47317 * 330.02279 * 1 2 3 35 35 H 1.08003 * 125.64900 * 359.93876 * 3 2 1 36 36 H 1.09001 * 110.36461 * 86.07636 * 8 6 5 37 37 H 1.08999 * 110.45904 * 323.80842 * 8 6 5 38 38 H 1.08993 * 110.97334 * 211.70784 * 14 12 10 39 39 H 1.09001 * 110.96593 * 335.43725 * 14 12 10 40 40 H 1.08998 * 110.48723 * 143.47906 * 15 14 12 41 41 H 1.08995 * 110.49084 * 266.11968 * 15 14 12 42 42 H 0.97003 * 124.34870 * 179.59419 * 18 16 15 43 43 H 1.09003 * 109.88485 * 239.51672 * 19 9 8 44 44 H 1.09005 * 110.00952 * 118.43219 * 19 9 8 45 45 H 0.97001 * 120.00384 * 93.55000 * 22 20 19 46 46 H 0.96999 * 119.99739 * 180.02562 * 26 25 23 47 47 H 1.07991 * 126.59697 * 179.69615 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0006 5 6 3.5460 -0.6505 0.0015 6 6 4.7891 -1.5026 0.0029 7 1 5.6144 -0.9875 -0.4886 8 6 4.5204 -2.8777 -0.6578 9 7 5.5273 -3.7811 -0.0720 10 6 5.9876 -4.9154 -0.6356 11 8 5.5695 -5.2676 -1.7183 12 6 7.0219 -5.7463 0.0792 13 1 7.7789 -5.1022 0.5266 14 6 6.3511 -6.6167 1.1651 15 6 6.1050 -7.9387 0.4017 16 6 7.1447 -7.9317 -0.6973 17 8 7.4789 -8.9021 -1.3436 18 7 7.6449 -6.6938 -0.8525 19 6 5.9455 -3.2401 1.2296 20 6 5.1751 -1.9206 1.4463 21 1 4.2853 -2.0888 2.0531 22 7 6.0388 -0.9117 2.0647 23 6 6.1592 -0.8560 3.4277 24 1 5.6209 -1.5586 4.0465 25 6 6.9731 0.1037 4.0139 26 7 7.6287 0.9603 3.2596 27 14 7.1378 0.1793 5.8730 28 1 6.3054 -0.8859 6.4874 29 1 8.5592 -0.0231 6.2527 30 1 6.6804 1.5066 6.3569 31 6 2.2773 -1.1019 -0.0043 32 1 -0.3633 -0.0006 -1.0277 33 1 -0.3634 -0.8898 0.5142 34 1 -0.3633 0.8901 0.5134 35 1 1.9334 2.1144 -0.0009 36 1 4.6524 -2.8119 -1.7378 37 1 3.5149 -3.2248 -0.4198 38 1 7.0223 -6.7729 2.0095 39 1 5.4106 -6.1744 1.4935 40 1 6.2532 -8.7935 1.0616 41 1 5.1013 -7.9529 -0.0229 42 1 8.3296 -6.4570 -1.4976 43 1 7.0182 -3.0464 1.2232 44 1 5.7014 -3.9465 2.0230 45 1 6.5222 -0.2806 1.5089 46 1 8.1977 1.6306 3.6692 47 1 1.9613 -2.1345 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070475413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:05 Heat of formation + Delta-G solvation = 24.449631 kcal Electronic energy + Delta-G solvation = -30947.109999 eV Core-core repulsion = 26745.783091 eV Total energy + Delta-G solvation = -4201.326908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.90858 -40.93935 -39.30366 -37.56352 -36.10254 -34.17530 -33.97100 -32.04607 -31.42283 -30.72555 -28.87310 -27.91219 -27.49216 -26.51482 -24.30617 -23.33872 -22.35160 -21.09804 -20.78455 -20.68075 -19.45103 -19.33479 -17.64627 -17.41776 -17.22514 -16.83575 -16.08557 -15.60650 -15.50932 -15.31212 -14.68546 -14.58308 -14.23045 -14.11278 -13.87966 -13.73540 -13.46040 -13.39846 -13.16557 -13.00725 -12.95216 -12.79451 -12.69529 -12.54315 -12.08946 -11.69778 -11.55046 -11.52340 -11.32058 -10.89757 -10.82721 -10.52156 -10.27583 -10.08901 -9.98318 -9.78351 -9.60359 -9.32809 -9.16002 -8.99286 -8.48286 -8.12759 -7.05462 -5.81971 -3.12719 2.19946 2.42933 2.56652 2.88018 2.90773 3.35935 3.38250 3.40535 3.43846 3.46699 4.15270 4.24717 4.38393 4.52563 4.58336 4.65297 4.69325 4.93464 4.93910 4.94629 5.03740 5.14306 5.17580 5.22745 5.31839 5.45317 5.51331 5.56663 5.57714 5.65857 5.67280 5.74468 5.79957 5.94513 6.18878 6.25993 6.30154 6.39509 6.42979 6.59121 6.79050 6.87246 6.95045 7.33686 7.60258 7.64539 8.09173 8.19276 8.34332 8.37839 9.46951 10.01429 10.36430 11.39537 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007440 B = 0.003791 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.543386 B = 7383.243205 C =10352.418652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.468 5.468 3 C 0.178 3.822 4 N -0.468 5.468 5 C 0.039 3.961 6 C -0.027 4.027 7 H 0.097 0.903 8 C 0.120 3.880 9 N -0.607 5.607 10 C 0.514 3.486 11 O -0.541 6.541 12 C 0.115 3.885 13 H 0.118 0.882 14 C -0.119 4.119 15 C -0.157 4.157 16 C 0.529 3.471 17 O -0.537 6.537 18 N -0.707 5.707 19 C 0.066 3.934 20 C 0.188 3.812 21 H 0.065 0.935 22 N -0.705 5.705 23 C -0.247 4.247 24 H 0.071 0.929 25 C -0.005 4.005 26 N -0.923 5.923 27 Si 0.904 3.096 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 C -0.066 4.066 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.201 0.799 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.414 0.586 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.390 0.610 46 H 0.255 0.745 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 -7.807 -4.899 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.152 5.152 3 C -0.104 4.104 4 N -0.185 5.185 5 C -0.091 4.091 6 C -0.048 4.048 7 H 0.115 0.885 8 C -0.003 4.003 9 N -0.340 5.340 10 C 0.300 3.700 11 O -0.419 6.419 12 C 0.006 3.994 13 H 0.135 0.865 14 C -0.157 4.157 15 C -0.197 4.197 16 C 0.315 3.685 17 O -0.414 6.414 18 N -0.362 5.362 19 C -0.060 4.060 20 C 0.074 3.926 21 H 0.083 0.917 22 N -0.344 5.344 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.202 4.202 26 N -0.570 5.570 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.219 1.219 31 C -0.198 4.198 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.218 0.782 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.253 0.747 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.225 0.775 46 H 0.066 0.934 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.464 -8.079 -5.554 15.084 hybrid contribution -0.278 0.268 0.722 0.819 sum -11.742 -7.811 -4.832 14.907 Atomic orbital electron populations 1.21966 0.77156 1.04453 1.03129 1.45360 1.07266 1.07113 1.55458 1.24983 0.85501 0.93458 1.06497 1.70222 1.18870 1.11420 1.17968 1.20066 0.92636 0.90446 1.05939 1.20826 0.94231 0.91649 0.98139 0.88489 1.22161 0.91475 0.88171 0.98538 1.48505 1.41606 1.22307 1.21615 1.20575 0.82990 0.80583 0.85879 1.90712 1.59524 1.70389 1.21234 1.21554 0.95735 0.92056 0.90084 0.86472 1.22581 1.02670 0.93831 0.96620 1.22360 1.00262 0.99649 0.97405 1.20804 0.81484 0.82362 0.83826 1.90745 1.63242 1.36725 1.50703 1.45884 1.41563 1.08833 1.39886 1.23541 1.01699 0.98353 0.82411 1.21136 0.93066 0.87702 0.90654 0.91748 1.42314 1.52577 1.35163 1.04357 1.19219 1.22926 1.12948 0.82735 0.91129 1.24738 0.99842 0.98053 0.97577 1.69683 1.33041 1.20604 1.33684 0.86188 0.77345 0.77334 0.85659 1.20567 1.21830 1.21898 1.22333 0.90942 0.92305 1.14194 0.90895 0.89932 0.89647 0.78224 0.90525 0.91462 0.88307 0.88514 0.87602 0.87595 0.74716 0.90320 0.91667 0.77504 0.93449 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 11.18 59.85 0.67 1.15 16 2 N -0.47 -5.34 3.15 -125.99 -0.40 -5.74 16 3 C 0.18 2.42 12.56 -90.37 -1.14 1.29 16 4 N -0.47 -8.36 11.25 -10.87 -0.12 -8.48 16 5 C 0.04 0.63 6.19 -82.85 -0.51 0.12 16 6 C -0.03 -0.44 3.18 -89.62 -0.28 -0.72 16 7 H 0.10 1.72 8.00 -51.93 -0.42 1.31 16 8 C 0.12 1.63 6.22 -2.54 -0.02 1.61 16 9 N -0.61 -8.18 3.33 -170.52 -0.57 -8.75 16 10 C 0.51 7.06 7.03 -10.99 -0.08 6.98 16 11 O -0.54 -9.27 16.81 5.55 0.09 -9.18 16 12 C 0.12 1.24 3.29 -68.16 -0.22 1.02 16 13 H 0.12 1.11 7.60 -51.93 -0.39 0.72 16 14 C -0.12 -1.01 6.61 -25.10 -0.17 -1.17 16 15 C -0.16 -1.50 6.85 -26.74 -0.18 -1.69 16 16 C 0.53 7.03 8.43 -10.86 -0.09 6.94 16 17 O -0.54 -9.20 18.03 5.55 0.10 -9.10 16 18 N -0.71 -8.34 5.45 -53.87 -0.29 -8.63 16 19 C 0.07 0.95 6.08 -3.06 -0.02 0.93 16 20 C 0.19 3.27 3.05 -66.10 -0.20 3.07 16 21 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 22 N -0.70 -16.07 5.18 -51.65 -0.27 -16.34 16 23 C -0.25 -6.29 9.98 -15.06 -0.15 -6.44 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 26 N -0.92 -26.69 13.06 55.49 0.72 -25.97 16 27 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 31 C -0.07 -0.85 10.68 -16.56 -0.18 -1.03 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.20 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 37 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.78 7.54 -51.93 -0.39 0.38 16 40 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.41 4.52 8.96 -40.82 -0.37 4.15 16 43 H 0.08 1.22 7.78 -51.93 -0.40 0.82 16 44 H 0.07 0.83 7.71 -51.93 -0.40 0.43 16 45 H 0.39 9.89 7.71 -40.82 -0.31 9.57 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.17 1.72 6.87 -52.49 -0.36 1.36 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -36.55 391.58 -9.23 -45.78 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.72 Total: 12.49 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -2.66 Total: 11.82 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -0.92 Total: -73.90 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.19 Total: -18.28 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.55 -9.23 -45.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070475413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.231 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds