Wall clock time and date at job start Wed Apr 1 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35040 * 126.39610 * 2 1 4 4 N 1.30504 * 108.69947 * 179.97438 * 3 2 1 5 5 C 1.34127 * 109.25188 * 359.97438 * 4 3 2 6 6 C 1.50709 * 125.98486 * 180.02562 * 5 4 3 7 7 H 1.08996 * 110.91141 * 331.12168 * 6 5 4 8 8 C 1.54908 * 111.00381 * 207.21899 * 6 5 4 9 9 N 1.47415 * 104.83313 * 204.91348 * 8 6 5 10 10 C 1.34772 * 125.65206 * 204.09193 * 9 8 6 11 11 O 1.21286 * 120.00036 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00510 * 180.02562 * 10 9 8 13 13 H 1.09005 * 110.21217 * 318.07202 * 12 10 9 14 14 C 1.54484 * 110.24784 * 79.99622 * 12 10 9 15 15 C 1.54626 * 101.76053 * 93.58631 * 14 12 10 16 16 C 1.51288 * 104.19788 * 24.79858 * 15 14 12 17 17 O 1.21286 * 124.94144 * 163.70458 * 16 15 14 18 18 N 1.34414 * 110.11452 * 343.75058 * 16 15 14 19 19 C 1.47026 * 108.70097 * 24.12967 * 9 8 6 20 20 C 1.54319 * 107.27305 * 358.93997 * 19 9 8 21 21 H 1.09004 * 110.71894 * 96.34703 * 20 19 9 22 22 N 1.46498 * 110.71865 * 219.44531 * 20 19 9 23 23 C 1.36943 * 119.99752 * 273.26644 * 22 20 19 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 20 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 20 26 26 N 1.31624 * 119.99698 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00072 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47159 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47290 * 120.00044 * 27 25 23 30 30 H 1.48503 * 109.47163 * 240.00049 * 27 25 23 31 31 C 1.34664 * 108.02844 * 0.26169 * 5 4 3 32 32 H 1.09003 * 109.46927 * 90.03098 * 1 2 3 33 33 H 1.09006 * 109.47143 * 210.02057 * 1 2 3 34 34 H 1.08990 * 109.47317 * 330.02279 * 1 2 3 35 35 H 1.08003 * 125.64900 * 359.93876 * 3 2 1 36 36 H 1.09001 * 110.36461 * 86.07636 * 8 6 5 37 37 H 1.08999 * 110.45904 * 323.80842 * 8 6 5 38 38 H 1.08993 * 110.97334 * 211.70784 * 14 12 10 39 39 H 1.09001 * 110.96593 * 335.43725 * 14 12 10 40 40 H 1.08998 * 110.48723 * 143.47906 * 15 14 12 41 41 H 1.08995 * 110.49084 * 266.11968 * 15 14 12 42 42 H 0.97003 * 124.34870 * 179.59419 * 18 16 15 43 43 H 1.09003 * 109.88485 * 239.51672 * 19 9 8 44 44 H 1.09005 * 110.00952 * 118.43219 * 19 9 8 45 45 H 0.97001 * 120.00384 * 93.55000 * 22 20 19 46 46 H 0.96999 * 119.99739 * 180.02562 * 26 25 23 47 47 H 1.07991 * 126.59697 * 179.69615 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0006 5 6 3.5460 -0.6505 0.0015 6 6 4.7891 -1.5026 0.0029 7 1 5.6144 -0.9875 -0.4886 8 6 4.5204 -2.8777 -0.6578 9 7 5.5273 -3.7811 -0.0720 10 6 5.9876 -4.9154 -0.6356 11 8 5.5695 -5.2676 -1.7183 12 6 7.0219 -5.7463 0.0792 13 1 7.7789 -5.1022 0.5266 14 6 6.3511 -6.6167 1.1651 15 6 6.1050 -7.9387 0.4017 16 6 7.1447 -7.9317 -0.6973 17 8 7.4789 -8.9021 -1.3436 18 7 7.6449 -6.6938 -0.8525 19 6 5.9455 -3.2401 1.2296 20 6 5.1751 -1.9206 1.4463 21 1 4.2853 -2.0888 2.0531 22 7 6.0388 -0.9117 2.0647 23 6 6.1592 -0.8560 3.4277 24 1 5.6209 -1.5586 4.0465 25 6 6.9731 0.1037 4.0139 26 7 7.6287 0.9603 3.2596 27 14 7.1378 0.1793 5.8730 28 1 6.3054 -0.8859 6.4874 29 1 8.5592 -0.0231 6.2527 30 1 6.6804 1.5066 6.3569 31 6 2.2773 -1.1019 -0.0043 32 1 -0.3633 -0.0006 -1.0277 33 1 -0.3634 -0.8898 0.5142 34 1 -0.3633 0.8901 0.5134 35 1 1.9334 2.1144 -0.0009 36 1 4.6524 -2.8119 -1.7378 37 1 3.5149 -3.2248 -0.4198 38 1 7.0223 -6.7729 2.0095 39 1 5.4106 -6.1744 1.4935 40 1 6.2532 -8.7935 1.0616 41 1 5.1013 -7.9529 -0.0229 42 1 8.3296 -6.4570 -1.4976 43 1 7.0182 -3.0464 1.2232 44 1 5.7014 -3.9465 2.0230 45 1 6.5222 -0.2806 1.5089 46 1 8.1977 1.6306 3.6692 47 1 1.9613 -2.1345 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070475413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:04 Heat of formation + Delta-G solvation = -2.469383 kcal Electronic energy + Delta-G solvation = -30948.277295 eV Core-core repulsion = 26745.783091 eV Total energy + Delta-G solvation = -4202.494204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.92810 -41.94211 -40.43869 -38.81034 -37.17285 -35.78636 -34.99794 -33.38978 -32.39864 -32.16501 -29.89950 -29.11558 -28.63598 -27.36314 -25.84886 -24.65568 -23.26282 -22.20093 -22.01799 -21.60927 -20.64306 -20.40067 -19.04971 -18.62169 -18.34955 -17.98882 -17.16276 -16.84484 -16.42511 -16.32764 -16.19218 -15.65672 -15.41632 -15.33134 -14.96529 -14.83506 -14.76985 -14.63305 -14.23731 -14.13817 -13.82697 -13.75345 -13.59561 -13.33603 -13.28680 -13.09509 -12.88009 -12.57712 -12.48877 -12.42392 -12.21365 -12.03909 -11.71282 -11.66383 -11.38736 -11.03309 -10.94947 -10.70002 -10.33800 -10.15148 -9.64432 -9.24649 -8.88988 -7.84138 -5.13271 1.21642 1.38592 1.50990 1.53433 1.54451 1.63449 1.87125 2.09120 2.27249 2.39987 2.63237 3.28518 3.36530 3.46389 3.48339 3.59415 3.85920 3.90932 3.98819 4.06590 4.10470 4.14022 4.22055 4.36060 4.42952 4.45693 4.46964 4.52606 4.66504 4.74424 4.78063 4.78878 4.83732 4.92088 5.02762 5.06208 5.11787 5.21859 5.41596 5.43089 5.62663 5.66489 5.89864 5.92039 6.34505 6.43312 6.48906 7.02771 7.15935 7.33775 7.42635 8.16177 8.39517 9.39224 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007440 B = 0.003791 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.543386 B = 7383.243205 C =10352.418652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.461 5.461 3 C 0.172 3.828 4 N -0.533 5.533 5 C -0.001 4.001 6 C -0.017 4.017 7 H 0.064 0.936 8 C 0.128 3.872 9 N -0.602 5.602 10 C 0.515 3.485 11 O -0.577 6.577 12 C 0.115 3.885 13 H 0.135 0.865 14 C -0.110 4.110 15 C -0.150 4.150 16 C 0.517 3.483 17 O -0.585 6.585 18 N -0.706 5.706 19 C 0.082 3.918 20 C 0.183 3.817 21 H 0.066 0.934 22 N -0.718 5.718 23 C -0.230 4.230 24 H 0.085 0.915 25 C -0.072 4.072 26 N -0.968 5.968 27 Si 0.964 3.036 28 H -0.259 1.259 29 H -0.297 1.297 30 H -0.305 1.305 31 C -0.050 4.050 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.228 0.772 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.107 0.893 42 H 0.414 0.586 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.372 0.628 46 H 0.247 0.753 47 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 -9.526 -3.353 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.111 4.111 4 N -0.251 5.251 5 C -0.131 4.131 6 C -0.038 4.038 7 H 0.082 0.918 8 C 0.005 3.995 9 N -0.335 5.335 10 C 0.303 3.697 11 O -0.457 6.457 12 C 0.006 3.994 13 H 0.152 0.848 14 C -0.148 4.148 15 C -0.190 4.190 16 C 0.306 3.694 17 O -0.466 6.466 18 N -0.359 5.359 19 C -0.043 4.043 20 C 0.073 3.927 21 H 0.084 0.916 22 N -0.356 5.356 23 C -0.362 4.362 24 H 0.103 0.897 25 C -0.264 4.264 26 N -0.619 5.619 27 Si 0.795 3.205 28 H -0.183 1.183 29 H -0.224 1.224 30 H -0.233 1.233 31 C -0.184 4.184 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.125 0.875 42 H 0.253 0.747 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.204 0.796 46 H 0.056 0.944 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.101 -9.830 -3.995 17.647 hybrid contribution 0.383 0.840 0.112 0.930 sum -13.717 -8.990 -3.883 16.854 Atomic orbital electron populations 1.22351 0.73810 1.06231 1.04872 1.45636 1.09165 1.05953 1.53549 1.25459 0.84933 0.95105 1.05609 1.70119 1.21736 1.12903 1.20362 1.20186 0.93812 0.90259 1.08806 1.20609 0.93714 0.92665 0.96856 0.91761 1.22106 0.92684 0.86902 0.97822 1.48462 1.41526 1.22227 1.21253 1.21086 0.82876 0.80341 0.85386 1.90706 1.60870 1.71227 1.22870 1.21749 0.95406 0.92136 0.90113 0.84754 1.22708 1.03654 0.92211 0.96215 1.22401 0.98780 1.01348 0.96461 1.21517 0.81769 0.81956 0.84165 1.90712 1.64929 1.38258 1.52664 1.46012 1.41155 1.08845 1.39859 1.23155 1.00404 0.97233 0.83548 1.21308 0.92421 0.87758 0.91259 0.91581 1.42454 1.53297 1.36275 1.03580 1.19651 1.20821 1.11641 0.84043 0.89745 1.25469 1.00901 0.98680 1.01355 1.69854 1.34889 1.21964 1.35160 0.85206 0.77018 0.77021 0.81300 1.18334 1.22430 1.23269 1.22690 0.90032 0.93828 1.11842 0.89125 0.88263 0.87886 0.75558 0.91369 0.88978 0.85613 0.87231 0.85356 0.87475 0.74747 0.91415 0.88645 0.79566 0.94442 0.78333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 11.18 127.77 1.43 2.04 16 2 N -0.46 -9.42 3.15 -552.53 -1.74 -11.16 16 3 C 0.17 4.53 12.56 180.26 2.26 6.80 16 4 N -0.53 -19.45 11.25 -188.31 -2.12 -21.57 16 5 C 0.00 -0.05 6.19 41.39 0.26 0.21 16 6 C -0.02 -0.56 3.18 -10.15 -0.03 -0.59 16 7 H 0.06 2.44 8.00 -2.39 -0.02 2.42 16 8 C 0.13 3.31 6.22 86.86 0.54 3.85 16 9 N -0.60 -15.08 3.33 -811.81 -2.70 -17.78 16 10 C 0.52 13.20 7.03 87.66 0.62 13.82 16 11 O -0.58 -19.17 16.81 -3.05 -0.05 -19.22 16 12 C 0.12 2.19 3.29 44.70 0.15 2.34 16 13 H 0.13 2.16 7.60 -2.38 -0.02 2.15 16 14 C -0.11 -1.43 6.61 31.65 0.21 -1.22 16 15 C -0.15 -2.46 6.85 30.59 0.21 -2.25 16 16 C 0.52 13.20 8.43 87.90 0.74 13.95 16 17 O -0.59 -20.09 18.03 -3.05 -0.05 -20.14 16 18 N -0.71 -15.83 5.45 -442.95 -2.41 -18.25 16 19 C 0.08 2.17 6.08 86.73 0.53 2.70 16 20 C 0.18 6.23 3.05 46.18 0.14 6.37 16 21 H 0.07 2.24 8.01 -2.39 -0.02 2.22 16 22 N -0.72 -33.07 5.18 -317.33 -1.64 -34.71 16 23 C -0.23 -11.56 9.98 84.03 0.84 -10.72 16 24 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 25 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 26 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 27 Si 0.96 43.73 29.55 68.60 2.03 45.76 16 28 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 29 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 30 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 31 C -0.05 -1.19 10.68 83.08 0.89 -0.30 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.23 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 37 H 0.09 1.94 6.35 -2.39 -0.02 1.92 16 38 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.21 7.54 -2.39 -0.02 1.20 16 40 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.41 8.92 8.96 -92.71 -0.83 8.09 16 43 H 0.07 2.00 7.78 -2.39 -0.02 1.98 16 44 H 0.10 2.01 7.71 -2.38 -0.02 1.99 16 45 H 0.37 19.69 7.71 -92.71 -0.72 18.98 16 46 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 47 H 0.20 3.30 6.87 -2.92 -0.02 3.28 16 Total: -1.00 -83.82 391.58 0.30 -83.52 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.52 Total: 37.48 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: 9.24 Total: 33.58 kcal Atomic # 7 Polarization: -150.64 SS G_CDS: -10.33 Total: -160.97 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.11 Total: -39.37 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -83.82 0.30 -83.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070475413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.049 kcal (2) G-P(sol) polarization free energy of solvation -83.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds