Wall clock time and date at job start Wed Apr 1 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35036 * 126.40048 * 2 1 4 4 N 1.30501 * 108.70072 * 179.97438 * 3 2 1 5 5 C 1.34123 * 109.25576 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.98937 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.65575 * 331.83335 * 6 5 4 8 8 C 1.54600 * 110.98833 * 208.67664 * 6 5 4 9 9 N 1.48117 * 103.42358 * 204.37278 * 8 6 5 10 10 C 1.34770 * 127.03280 * 219.29212 * 9 8 6 11 11 O 1.21284 * 120.00108 * 184.72622 * 10 9 8 12 12 C 1.50707 * 120.00382 * 4.71891 * 10 9 8 13 13 H 1.09003 * 110.42833 * 29.84590 * 12 10 9 14 14 C 1.54855 * 110.60109 * 152.44128 * 12 10 9 15 15 C 1.54477 * 101.65744 * 93.94242 * 14 12 10 16 16 N 1.46764 * 105.55294 * 25.43155 * 15 14 12 17 17 C 1.34416 * 111.29684 * 342.93779 * 16 15 14 18 18 O 1.21284 * 124.93895 * 180.38597 * 17 16 15 19 19 C 1.47491 * 105.93070 * 39.02407 * 9 8 6 20 20 C 1.53996 * 107.08392 * 334.78022 * 19 9 8 21 21 H 1.09000 * 110.32648 * 120.29908 * 20 19 9 22 22 N 1.46501 * 110.32548 * 242.41301 * 20 19 9 23 23 C 1.36938 * 120.00180 * 273.54425 * 22 20 19 24 24 H 1.08003 * 119.99363 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00585 * 179.97438 * 23 22 20 26 26 N 1.31610 * 120.00554 * 180.02562 * 25 23 22 27 27 Si 1.86807 * 119.99526 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47143 * 90.00074 * 27 25 23 29 29 H 1.48510 * 109.46806 * 210.00032 * 27 25 23 30 30 H 1.48502 * 109.47274 * 329.99577 * 27 25 23 31 31 C 1.34671 * 108.02108 * 0.26018 * 5 4 3 32 32 H 1.09003 * 109.46434 * 90.02266 * 1 2 3 33 33 H 1.09000 * 109.47363 * 210.02226 * 1 2 3 34 34 H 1.08999 * 109.46904 * 330.02863 * 1 2 3 35 35 H 1.08006 * 125.64947 * 359.94621 * 3 2 1 36 36 H 1.09007 * 110.61383 * 85.86103 * 8 6 5 37 37 H 1.08995 * 110.54797 * 322.85523 * 8 6 5 38 38 H 1.08993 * 111.04599 * 335.84591 * 14 12 10 39 39 H 1.09001 * 110.99307 * 212.00969 * 14 12 10 40 40 H 1.09004 * 110.24500 * 266.38550 * 15 14 12 41 41 H 1.09007 * 110.24704 * 144.47462 * 15 14 12 42 42 H 0.97002 * 124.35015 * 162.96320 * 16 15 14 43 43 H 1.09001 * 109.90766 * 94.14126 * 19 9 8 44 44 H 1.09001 * 109.90838 * 215.22852 * 19 9 8 45 45 H 0.96997 * 120.00102 * 93.54851 * 22 20 19 46 46 H 0.97006 * 120.00579 * 180.02562 * 26 25 23 47 47 H 1.08000 * 126.58980 * 179.69309 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5096 0.6901 0.0006 5 6 3.5461 -0.6506 0.0004 6 6 4.7890 -1.5027 0.0014 7 1 5.6150 -0.9785 -0.4792 8 6 4.5303 -2.8602 -0.6918 9 7 5.5545 -3.7503 -0.0978 10 6 6.2704 -4.7001 -0.7315 11 8 7.0185 -5.4172 -0.1013 12 6 6.1414 -4.8714 -2.2233 13 1 5.8997 -3.9194 -2.6960 14 6 7.4454 -5.4564 -2.8193 15 6 7.1334 -6.9693 -2.8280 16 7 5.6704 -7.0690 -2.8884 17 6 5.0874 -5.9067 -2.5481 18 8 3.8903 -5.7156 -2.5079 19 6 5.6352 -3.3799 1.3276 20 6 5.1676 -1.9171 1.4421 21 1 4.3000 -1.8472 2.0982 22 7 6.2544 -1.0734 1.9453 23 6 6.4486 -0.9390 3.2941 24 1 5.8006 -1.4553 3.9870 25 6 7.4786 -0.1400 3.7710 26 7 7.6655 -0.0112 5.0673 27 14 8.5997 0.7525 2.5725 28 1 8.0344 2.0919 2.2696 29 1 9.9468 0.9089 3.1776 30 1 8.7091 -0.0340 1.3176 31 6 2.2772 -1.1019 -0.0062 32 1 -0.3632 -0.0004 -1.0277 33 1 -0.3634 -0.8898 0.5142 34 1 -0.3633 0.8902 0.5134 35 1 1.9335 2.1144 -0.0008 36 1 4.6733 -2.7745 -1.7690 37 1 3.5277 -3.2215 -0.4633 38 1 8.3005 -5.2381 -2.1797 39 1 7.6125 -5.0868 -3.8311 40 1 7.5060 -7.4365 -1.9163 41 1 7.5801 -7.4416 -3.7030 42 1 5.1864 -7.8708 -3.1410 43 1 4.9832 -4.0253 1.9162 44 1 6.6634 -3.4725 1.6775 45 1 6.8365 -0.6099 1.3230 46 1 8.3851 0.5475 5.4006 47 1 1.9612 -2.1346 -0.0127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070520896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:19 Heat of formation + Delta-G solvation = 32.332106 kcal Electronic energy + Delta-G solvation = -31315.050406 eV Core-core repulsion = 27114.065308 eV Total energy + Delta-G solvation = -4200.985098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.96891 -41.04615 -39.20011 -37.57944 -36.36760 -34.18180 -34.03142 -32.05751 -31.50417 -30.82816 -28.78476 -28.18801 -27.34936 -26.67631 -24.36272 -22.84708 -22.42724 -21.56724 -21.06171 -20.37175 -19.50574 -18.98931 -17.90718 -17.67273 -17.18902 -17.00428 -16.17348 -15.61019 -15.56277 -15.16147 -14.82088 -14.56156 -14.27090 -14.04928 -13.95861 -13.88883 -13.65533 -13.40043 -13.04309 -12.97921 -12.93249 -12.79406 -12.61769 -12.32870 -12.06427 -11.94772 -11.77177 -11.62339 -11.27893 -10.79931 -10.70203 -10.56903 -10.22749 -10.04641 -9.79679 -9.69102 -9.54457 -9.38594 -9.34550 -8.97448 -8.47633 -8.17337 -7.21282 -5.71616 -3.07495 2.13804 2.16336 2.61471 2.85380 3.01569 3.25047 3.32295 3.46360 3.50371 3.53152 4.11205 4.14942 4.36406 4.57150 4.59364 4.66549 4.70312 4.83275 4.91301 4.93118 4.97476 5.09385 5.17643 5.22151 5.28006 5.29493 5.53312 5.57911 5.59225 5.65103 5.72663 5.74189 5.78155 5.90961 6.16252 6.27566 6.32404 6.35955 6.46291 6.61243 6.67933 6.83410 6.91283 7.28977 7.68784 7.94125 8.02590 8.21483 8.30241 8.46926 9.24607 9.97382 10.15977 11.46414 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007534 B = 0.004397 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.739717 B = 6366.697678 C = 9279.232737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.467 5.467 3 C 0.178 3.822 4 N -0.475 5.475 5 C 0.032 3.968 6 C -0.030 4.030 7 H 0.094 0.906 8 C 0.113 3.887 9 N -0.606 5.606 10 C 0.547 3.453 11 O -0.533 6.533 12 C -0.150 4.150 13 H 0.126 0.874 14 C -0.115 4.115 15 C 0.101 3.899 16 N -0.726 5.726 17 C 0.537 3.463 18 O -0.523 6.523 19 C 0.080 3.920 20 C 0.189 3.811 21 H 0.074 0.926 22 N -0.733 5.733 23 C -0.245 4.245 24 H 0.090 0.910 25 C 0.010 3.990 26 N -0.933 5.933 27 Si 0.884 3.116 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.277 1.277 31 C -0.060 4.060 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.202 0.798 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.412 0.588 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.364 0.636 46 H 0.259 0.741 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 -8.339 -20.079 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.150 5.150 3 C -0.104 4.104 4 N -0.193 5.193 5 C -0.097 4.097 6 C -0.051 4.051 7 H 0.112 0.888 8 C -0.011 4.011 9 N -0.339 5.339 10 C 0.334 3.666 11 O -0.410 6.410 12 C -0.175 4.175 13 H 0.144 0.856 14 C -0.153 4.153 15 C -0.023 4.023 16 N -0.382 5.382 17 C 0.321 3.679 18 O -0.399 6.399 19 C -0.044 4.044 20 C 0.077 3.923 21 H 0.092 0.908 22 N -0.374 5.374 23 C -0.374 4.374 24 H 0.108 0.892 25 C -0.186 4.186 26 N -0.580 5.580 27 Si 0.714 3.286 28 H -0.209 1.209 29 H -0.219 1.219 30 H -0.203 1.203 31 C -0.192 4.192 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.219 0.781 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.251 0.749 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.198 0.802 46 H 0.069 0.931 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.901 -8.059 -19.427 23.689 hybrid contribution -0.174 -0.053 -0.803 0.824 sum -11.075 -8.112 -20.230 24.448 Atomic orbital electron populations 1.21989 0.76976 1.04583 1.03212 1.45359 1.07380 1.07084 1.55210 1.24962 0.85458 0.93504 1.06452 1.70185 1.19096 1.11498 1.18474 1.20110 0.92770 0.90409 1.06449 1.20737 0.94130 0.92231 0.98045 0.88780 1.22495 0.92025 0.88577 0.98001 1.48729 1.38325 1.34871 1.11968 1.19216 0.80075 0.79920 0.87433 1.90718 1.38861 1.44218 1.67243 1.22182 0.97859 1.01529 0.95932 0.85649 1.22599 0.96603 0.93938 1.02202 1.22140 0.79676 0.97422 1.03045 1.46120 1.08579 1.13819 1.69656 1.20197 0.88168 0.83827 0.75717 1.90768 1.14721 1.81531 1.52866 1.23397 1.03859 0.98078 0.79094 1.21059 0.91970 0.87750 0.91555 0.90787 1.42757 1.34400 1.55429 1.04858 1.19037 1.12444 1.24530 0.81432 0.89185 1.24621 0.98766 0.99815 0.95438 1.69700 1.33953 1.43267 1.11108 0.86558 0.80728 0.80435 0.80889 1.20875 1.21897 1.20304 1.22392 0.90829 0.92468 1.13487 0.90815 0.89783 0.89594 0.78146 0.90225 0.90293 0.87844 0.89171 0.89928 0.90014 0.74879 0.92176 0.89139 0.80225 0.93091 0.81020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 11.18 59.85 0.67 1.14 16 2 N -0.47 -5.24 3.15 -125.99 -0.40 -5.63 16 3 C 0.18 2.34 12.56 -90.38 -1.14 1.21 16 4 N -0.48 -8.24 11.25 -10.87 -0.12 -8.36 16 5 C 0.03 0.52 6.04 -82.85 -0.50 0.02 16 6 C -0.03 -0.49 3.27 -90.08 -0.29 -0.79 16 7 H 0.09 1.64 7.74 -51.93 -0.40 1.24 16 8 C 0.11 1.54 6.25 -2.31 -0.01 1.52 16 9 N -0.61 -9.71 3.29 -169.97 -0.56 -10.27 16 10 C 0.55 8.60 6.98 -10.98 -0.08 8.53 16 11 O -0.53 -9.92 16.33 5.55 0.09 -9.83 16 12 C -0.15 -1.74 2.87 -91.66 -0.26 -2.00 16 13 H 0.13 1.25 6.62 -51.93 -0.34 0.91 16 14 C -0.12 -0.98 6.41 -24.98 -0.16 -1.14 16 15 C 0.10 0.77 7.62 -3.12 -0.02 0.75 16 16 N -0.73 -6.65 6.24 -59.20 -0.37 -7.02 16 17 C 0.54 6.64 7.74 -10.86 -0.08 6.56 16 18 O -0.52 -8.05 18.03 5.55 0.10 -7.95 16 19 C 0.08 1.50 6.74 -2.98 -0.02 1.48 16 20 C 0.19 3.67 3.21 -66.56 -0.21 3.46 16 21 H 0.07 1.50 7.81 -51.93 -0.41 1.10 16 22 N -0.73 -17.62 4.88 -52.10 -0.25 -17.88 16 23 C -0.24 -6.96 10.45 -15.06 -0.16 -7.12 16 24 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 25 C 0.01 0.28 5.50 -17.44 -0.10 0.19 16 26 N -0.93 -29.72 13.97 55.49 0.78 -28.94 16 27 Si 0.88 22.88 27.74 -169.99 -4.71 18.17 16 28 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 30 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 31 C -0.06 -0.77 10.69 -16.56 -0.18 -0.95 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.20 1.87 8.06 -52.48 -0.42 1.44 16 36 H 0.08 0.94 6.49 -51.93 -0.34 0.60 16 37 H 0.08 1.00 6.41 -51.93 -0.33 0.67 16 38 H 0.10 0.99 7.53 -51.93 -0.39 0.60 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.41 2.95 8.96 -40.82 -0.37 2.58 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.96 7.89 -51.93 -0.41 1.55 16 45 H 0.36 8.82 5.40 -40.82 -0.22 8.60 16 46 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 47 H 0.17 1.82 6.92 -52.49 -0.36 1.45 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -39.39 386.31 -8.72 -48.11 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.54 Total: 10.94 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: -2.55 Total: 12.85 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -0.93 Total: -78.10 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.19 Total: -17.78 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.71 Total: 18.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.39 -8.72 -48.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070520896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.442 kcal (2) G-P(sol) polarization free energy of solvation -39.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds