Wall clock time and date at job start Wed Apr 1 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35036 * 126.40048 * 2 1 4 4 N 1.30501 * 108.70072 * 179.97438 * 3 2 1 5 5 C 1.34123 * 109.25576 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.98937 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.65575 * 331.83335 * 6 5 4 8 8 C 1.54600 * 110.98833 * 208.67664 * 6 5 4 9 9 N 1.48117 * 103.42358 * 204.37278 * 8 6 5 10 10 C 1.34770 * 127.03280 * 219.29212 * 9 8 6 11 11 O 1.21284 * 120.00108 * 184.72622 * 10 9 8 12 12 C 1.50707 * 120.00382 * 4.71891 * 10 9 8 13 13 H 1.09003 * 110.42833 * 29.84590 * 12 10 9 14 14 C 1.54855 * 110.60109 * 152.44128 * 12 10 9 15 15 C 1.54477 * 101.65744 * 93.94242 * 14 12 10 16 16 N 1.46764 * 105.55294 * 25.43155 * 15 14 12 17 17 C 1.34416 * 111.29684 * 342.93779 * 16 15 14 18 18 O 1.21284 * 124.93895 * 180.38597 * 17 16 15 19 19 C 1.47491 * 105.93070 * 39.02407 * 9 8 6 20 20 C 1.53996 * 107.08392 * 334.78022 * 19 9 8 21 21 H 1.09000 * 110.32648 * 120.29908 * 20 19 9 22 22 N 1.46501 * 110.32548 * 242.41301 * 20 19 9 23 23 C 1.36938 * 120.00180 * 273.54425 * 22 20 19 24 24 H 1.08003 * 119.99363 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00585 * 179.97438 * 23 22 20 26 26 N 1.31610 * 120.00554 * 180.02562 * 25 23 22 27 27 Si 1.86807 * 119.99526 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47143 * 90.00074 * 27 25 23 29 29 H 1.48510 * 109.46806 * 210.00032 * 27 25 23 30 30 H 1.48502 * 109.47274 * 329.99577 * 27 25 23 31 31 C 1.34671 * 108.02108 * 0.26018 * 5 4 3 32 32 H 1.09003 * 109.46434 * 90.02266 * 1 2 3 33 33 H 1.09000 * 109.47363 * 210.02226 * 1 2 3 34 34 H 1.08999 * 109.46904 * 330.02863 * 1 2 3 35 35 H 1.08006 * 125.64947 * 359.94621 * 3 2 1 36 36 H 1.09007 * 110.61383 * 85.86103 * 8 6 5 37 37 H 1.08995 * 110.54797 * 322.85523 * 8 6 5 38 38 H 1.08993 * 111.04599 * 335.84591 * 14 12 10 39 39 H 1.09001 * 110.99307 * 212.00969 * 14 12 10 40 40 H 1.09004 * 110.24500 * 266.38550 * 15 14 12 41 41 H 1.09007 * 110.24704 * 144.47462 * 15 14 12 42 42 H 0.97002 * 124.35015 * 162.96320 * 16 15 14 43 43 H 1.09001 * 109.90766 * 94.14126 * 19 9 8 44 44 H 1.09001 * 109.90838 * 215.22852 * 19 9 8 45 45 H 0.96997 * 120.00102 * 93.54851 * 22 20 19 46 46 H 0.97006 * 120.00579 * 180.02562 * 26 25 23 47 47 H 1.08000 * 126.58980 * 179.69309 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5096 0.6901 0.0006 5 6 3.5461 -0.6506 0.0004 6 6 4.7890 -1.5027 0.0014 7 1 5.6150 -0.9785 -0.4792 8 6 4.5303 -2.8602 -0.6918 9 7 5.5545 -3.7503 -0.0978 10 6 6.2704 -4.7001 -0.7315 11 8 7.0185 -5.4172 -0.1013 12 6 6.1414 -4.8714 -2.2233 13 1 5.8997 -3.9194 -2.6960 14 6 7.4454 -5.4564 -2.8193 15 6 7.1334 -6.9693 -2.8280 16 7 5.6704 -7.0690 -2.8884 17 6 5.0874 -5.9067 -2.5481 18 8 3.8903 -5.7156 -2.5079 19 6 5.6352 -3.3799 1.3276 20 6 5.1676 -1.9171 1.4421 21 1 4.3000 -1.8472 2.0982 22 7 6.2544 -1.0734 1.9453 23 6 6.4486 -0.9390 3.2941 24 1 5.8006 -1.4553 3.9870 25 6 7.4786 -0.1400 3.7710 26 7 7.6655 -0.0112 5.0673 27 14 8.5997 0.7525 2.5725 28 1 8.0344 2.0919 2.2696 29 1 9.9468 0.9089 3.1776 30 1 8.7091 -0.0340 1.3176 31 6 2.2772 -1.1019 -0.0062 32 1 -0.3632 -0.0004 -1.0277 33 1 -0.3634 -0.8898 0.5142 34 1 -0.3633 0.8902 0.5134 35 1 1.9335 2.1144 -0.0008 36 1 4.6733 -2.7745 -1.7690 37 1 3.5277 -3.2215 -0.4633 38 1 8.3005 -5.2381 -2.1797 39 1 7.6125 -5.0868 -3.8311 40 1 7.5060 -7.4365 -1.9163 41 1 7.5801 -7.4416 -3.7030 42 1 5.1864 -7.8708 -3.1410 43 1 4.9832 -4.0253 1.9162 44 1 6.6634 -3.4725 1.6775 45 1 6.8365 -0.6099 1.3230 46 1 8.3851 0.5475 5.4006 47 1 1.9612 -2.1346 -0.0127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070520896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:17 Heat of formation + Delta-G solvation = 1.917248 kcal Electronic energy + Delta-G solvation = -31316.369294 eV Core-core repulsion = 27114.065308 eV Total energy + Delta-G solvation = -4202.303985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.97449 -42.03884 -40.40923 -38.90541 -37.30168 -36.02328 -34.99619 -33.64328 -32.61956 -32.35916 -30.06317 -29.13839 -28.54664 -27.50388 -25.92809 -24.45407 -23.33427 -22.54082 -22.03492 -21.75750 -20.85934 -20.15281 -19.51043 -18.76457 -18.41147 -18.03852 -17.32857 -16.78363 -16.63776 -16.41336 -16.06916 -15.80655 -15.65926 -15.19469 -15.06085 -14.87751 -14.75191 -14.71841 -14.45132 -14.24705 -13.93570 -13.70105 -13.66980 -13.58052 -13.37599 -13.24773 -13.00262 -12.64676 -12.53016 -12.43591 -12.38161 -12.17685 -11.85803 -11.73532 -11.27824 -11.11898 -10.93949 -10.77361 -10.37121 -10.11577 -9.87959 -9.43424 -9.10445 -8.02982 -5.36082 1.10880 1.19445 1.36454 1.40684 1.45491 1.46887 1.92525 2.07198 2.21421 2.40084 2.47898 3.21669 3.26174 3.32791 3.36848 3.45187 3.70697 3.80913 3.87977 3.97405 4.06351 4.13335 4.16136 4.25822 4.36240 4.38636 4.47006 4.53018 4.59458 4.66038 4.74103 4.75846 4.78865 4.82075 4.96639 5.01757 5.07668 5.12292 5.32960 5.39184 5.71094 5.74745 5.84599 5.90867 6.20470 6.40798 6.44390 6.95356 7.05595 7.11380 7.28159 7.80784 7.99286 9.18449 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007534 B = 0.004397 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.739717 B = 6366.697678 C = 9279.232737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.461 5.461 3 C 0.177 3.823 4 N -0.533 5.533 5 C -0.005 4.005 6 C -0.016 4.016 7 H 0.080 0.920 8 C 0.123 3.877 9 N -0.609 5.609 10 C 0.540 3.460 11 O -0.569 6.569 12 C -0.146 4.146 13 H 0.145 0.855 14 C -0.112 4.112 15 C 0.100 3.900 16 N -0.713 5.713 17 C 0.531 3.469 18 O -0.558 6.558 19 C 0.092 3.908 20 C 0.187 3.813 21 H 0.062 0.938 22 N -0.737 5.737 23 C -0.227 4.227 24 H 0.059 0.941 25 C -0.057 4.057 26 N -0.981 5.981 27 Si 0.950 3.050 28 H -0.280 1.280 29 H -0.294 1.294 30 H -0.258 1.258 31 C -0.047 4.047 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.067 0.933 41 H 0.123 0.877 42 H 0.423 0.577 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.364 0.636 46 H 0.257 0.743 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.657 -8.779 -23.789 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.106 4.106 4 N -0.251 5.251 5 C -0.134 4.134 6 C -0.037 4.037 7 H 0.098 0.902 8 C 0.001 3.999 9 N -0.341 5.341 10 C 0.329 3.671 11 O -0.449 6.449 12 C -0.171 4.171 13 H 0.162 0.838 14 C -0.150 4.150 15 C -0.024 4.024 16 N -0.368 5.368 17 C 0.315 3.685 18 O -0.437 6.437 19 C -0.034 4.034 20 C 0.076 3.924 21 H 0.080 0.920 22 N -0.379 5.379 23 C -0.358 4.358 24 H 0.077 0.923 25 C -0.248 4.248 26 N -0.632 5.632 27 Si 0.778 3.222 28 H -0.207 1.207 29 H -0.221 1.221 30 H -0.183 1.183 31 C -0.181 4.181 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.249 0.751 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.141 0.859 42 H 0.263 0.737 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.198 0.802 46 H 0.066 0.934 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.297 -8.551 -23.210 27.624 hybrid contribution 0.108 0.003 0.382 0.397 sum -12.189 -8.549 -22.829 27.254 Atomic orbital electron populations 1.22364 0.73776 1.06157 1.05032 1.45633 1.09219 1.05984 1.53417 1.25517 0.84800 0.95138 1.05118 1.70082 1.21817 1.12493 1.20736 1.20107 0.93538 0.90382 1.09385 1.20512 0.94396 0.93615 0.95162 0.90178 1.22584 0.91933 0.86342 0.99073 1.48804 1.39078 1.35498 1.10754 1.20027 0.78950 0.78932 0.89219 1.90697 1.40195 1.45441 1.68532 1.22231 0.99611 1.02775 0.92466 0.83756 1.22721 0.94392 0.94306 1.03565 1.22305 0.78621 0.97152 1.04281 1.46140 1.09359 1.13308 1.67979 1.20325 0.87739 0.84725 0.75720 1.90746 1.16022 1.82253 1.54666 1.22912 1.01552 0.97587 0.81350 1.21174 0.90033 0.87496 0.93678 0.92009 1.42727 1.35731 1.56334 1.03082 1.18995 1.11039 1.22725 0.83046 0.92302 1.25371 1.00849 1.01509 0.97095 1.69864 1.35128 1.44966 1.13240 0.85481 0.78274 0.79167 0.79284 1.20660 1.22069 1.18256 1.22687 0.90149 0.93855 1.11394 0.88813 0.88649 0.87725 0.75103 0.87511 0.88790 0.89114 0.85558 0.91423 0.85922 0.73667 0.91881 0.92700 0.80208 0.93363 0.78716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 11.18 127.77 1.43 2.03 16 2 N -0.46 -9.15 3.15 -552.51 -1.74 -10.89 16 3 C 0.18 4.34 12.56 180.26 2.26 6.60 16 4 N -0.53 -18.19 11.25 -188.32 -2.12 -20.31 16 5 C -0.01 -0.16 6.04 41.39 0.25 0.09 16 6 C -0.02 -0.51 3.27 -10.44 -0.03 -0.54 16 7 H 0.08 2.78 7.74 -2.39 -0.02 2.77 16 8 C 0.12 3.17 6.25 86.61 0.54 3.72 16 9 N -0.61 -19.27 3.29 -810.06 -2.67 -21.93 16 10 C 0.54 16.64 6.98 87.66 0.61 17.25 16 11 O -0.57 -21.40 16.33 -3.04 -0.05 -21.45 16 12 C -0.15 -3.06 2.87 -11.47 -0.03 -3.09 16 13 H 0.14 2.42 6.62 -2.39 -0.02 2.40 16 14 C -0.11 -1.58 6.41 31.73 0.20 -1.38 16 15 C 0.10 1.22 7.62 86.83 0.66 1.88 16 16 N -0.71 -11.19 6.24 -459.80 -2.87 -14.06 16 17 C 0.53 11.97 7.74 87.90 0.68 12.65 16 18 O -0.56 -16.13 18.03 -3.04 -0.05 -16.19 16 19 C 0.09 3.52 6.74 86.53 0.58 4.10 16 20 C 0.19 7.45 3.21 45.88 0.15 7.60 16 21 H 0.06 2.61 7.81 -2.39 -0.02 2.59 16 22 N -0.74 -36.43 4.88 -318.74 -1.56 -37.98 16 23 C -0.23 -13.46 10.45 84.03 0.88 -12.58 16 24 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 25 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 26 N -0.98 -64.90 13.97 21.65 0.30 -64.60 16 27 Si 0.95 48.41 27.74 68.60 1.90 50.31 16 28 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 30 H -0.26 -12.13 6.52 99.48 0.65 -11.48 16 31 C -0.05 -1.12 10.69 83.09 0.89 -0.23 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.23 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.11 2.21 6.49 -2.38 -0.02 2.20 16 37 H 0.09 2.17 6.41 -2.39 -0.02 2.15 16 38 H 0.09 1.58 7.53 -2.39 -0.02 1.56 16 39 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.42 4.95 8.96 -92.71 -0.83 4.12 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.05 2.50 7.89 -2.39 -0.02 2.48 16 45 H 0.36 17.85 5.40 -92.71 -0.50 17.35 16 46 H 0.26 16.23 8.31 -92.70 -0.77 15.46 16 47 H 0.20 3.56 6.92 -2.91 -0.02 3.54 16 Total: -1.00 -90.81 386.31 0.32 -90.49 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.36 Total: 31.51 kcal Atomic # 6 Polarization: 25.56 SS G_CDS: 9.54 Total: 35.09 kcal Atomic # 7 Polarization: -159.13 SS G_CDS: -10.65 Total: -169.78 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.10 Total: -37.63 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.90 Total: 50.31 kcal Total: -90.81 0.32 -90.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070520896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.409 kcal (2) G-P(sol) polarization free energy of solvation -90.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds