Wall clock time and date at job start Wed Apr 1 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35051 * 126.39553 * 2 1 4 4 N 1.30500 * 108.69683 * 179.76386 * 3 2 1 5 5 C 1.34118 * 109.25818 * 0.38389 * 4 3 2 6 6 C 1.50703 * 125.98988 * 179.88440 * 5 4 3 7 7 H 1.08997 * 110.77714 * 336.46953 * 6 5 4 8 8 C 1.54328 * 110.71951 * 213.23498 * 6 5 4 9 9 N 1.47021 * 107.40273 * 219.51936 * 8 6 5 10 10 C 1.34771 * 125.64955 * 178.82891 * 9 8 6 11 11 O 1.21282 * 120.00171 * 174.98208 * 10 9 8 12 12 C 1.50696 * 120.00048 * 354.98256 * 10 9 8 13 13 H 1.08999 * 110.43572 * 337.22035 * 12 10 9 14 14 C 1.54625 * 110.48866 * 214.67520 * 12 10 9 15 15 C 1.54486 * 101.76496 * 216.52595 * 14 12 10 16 16 N 1.46760 * 105.47307 * 25.41523 * 15 14 12 17 17 C 1.34652 * 111.33849 * 342.86631 * 16 15 14 18 18 O 1.21281 * 125.07378 * 180.51168 * 17 16 15 19 19 C 1.47427 * 108.70160 * 358.85973 * 9 8 6 20 20 C 1.54912 * 104.82962 * 24.13090 * 19 9 8 21 21 H 1.09011 * 111.00481 * 81.06372 * 20 19 9 22 22 N 1.46502 * 111.00527 * 204.87274 * 20 19 9 23 23 C 1.36933 * 119.99992 * 273.55209 * 22 20 19 24 24 H 1.07996 * 120.00462 * 359.97438 * 23 22 20 25 25 C 1.38821 * 119.99985 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99580 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00184 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47389 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47234 * 119.99842 * 27 25 23 30 30 H 1.48503 * 109.47322 * 239.99949 * 27 25 23 31 31 C 1.34668 * 108.02384 * 359.61684 * 5 4 3 32 32 H 1.08995 * 109.47186 * 269.99569 * 1 2 3 33 33 H 1.09002 * 109.47338 * 30.00106 * 1 2 3 34 34 H 1.09000 * 109.46750 * 150.00134 * 1 2 3 35 35 H 1.08002 * 125.64735 * 359.97438 * 3 2 1 36 36 H 1.08998 * 109.88139 * 100.02543 * 8 6 5 37 37 H 1.09003 * 109.88462 * 339.01603 * 8 6 5 38 38 H 1.09003 * 110.97078 * 334.64152 * 14 12 10 39 39 H 1.08991 * 110.97411 * 98.40521 * 14 12 10 40 40 H 1.09000 * 110.24559 * 144.41542 * 15 14 12 41 41 H 1.09004 * 110.24254 * 266.32113 * 15 14 12 42 42 H 0.97005 * 124.35007 * 162.98355 * 16 15 14 43 43 H 1.09002 * 110.36270 * 142.96704 * 19 9 8 44 44 H 1.08995 * 110.37209 * 265.28982 * 19 9 8 45 45 H 0.97003 * 119.99759 * 93.54486 * 22 20 19 46 46 H 0.97002 * 120.00050 * 180.02562 * 26 25 23 47 47 H 1.08004 * 126.59331 * 180.24852 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5096 0.6903 0.0051 5 6 3.5461 -0.6503 0.0000 6 6 4.7891 -1.5024 0.0009 7 1 5.6377 -0.9488 -0.4010 8 6 4.5595 -2.8039 -0.7961 9 7 5.2302 -3.8901 -0.0669 10 6 5.2425 -5.1884 -0.4285 11 8 5.9050 -5.9866 0.1998 12 6 4.4331 -5.6482 -1.6135 13 1 3.6181 -4.9518 -1.8111 14 6 3.8814 -7.0724 -1.3723 15 6 3.9759 -7.6903 -2.7851 16 7 5.0427 -6.9477 -3.4666 17 6 5.3153 -5.7906 -2.8343 18 8 6.1464 -4.9816 -3.1889 19 6 5.8865 -3.3241 1.1257 20 6 5.1013 -2.0241 1.4309 21 1 4.1819 -2.2414 1.9747 22 7 5.9320 -1.0701 2.1699 23 6 6.0021 -1.1377 3.5358 24 1 5.4447 -1.8940 4.0683 25 6 6.7897 -0.2341 4.2360 26 7 7.4694 0.6873 3.5869 27 14 6.8847 -0.3258 6.0992 28 1 6.0333 -1.4419 6.5840 29 1 8.2917 -0.5605 6.5122 30 1 6.4042 0.9523 6.6830 31 6 2.2773 -1.1017 0.0000 32 1 -0.3633 -0.0001 1.0276 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 1.9334 2.1145 -0.0004 36 1 4.9873 -2.7078 -1.7940 37 1 3.4917 -3.0104 -0.8691 38 1 4.5062 -7.6182 -0.6653 39 1 2.8472 -7.0374 -1.0303 40 1 4.2353 -8.7468 -2.7182 41 1 3.0311 -7.5672 -3.3145 42 1 5.4927 -7.2505 -4.2708 43 1 5.8132 -4.0172 1.9638 44 1 6.9305 -3.0954 0.9117 45 1 6.4325 -0.3906 1.6916 46 1 8.0200 1.3185 4.0761 47 1 1.9614 -2.1345 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070520897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:27 Heat of formation + Delta-G solvation = 25.794429 kcal Electronic energy + Delta-G solvation = -31135.861197 eV Core-core repulsion = 26934.592604 eV Total energy + Delta-G solvation = -4201.268593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.88905 -40.97145 -39.16083 -37.39974 -36.48616 -34.11437 -33.93565 -32.06229 -31.45530 -30.55506 -28.63744 -28.14030 -27.15008 -26.62562 -24.19709 -23.03712 -22.34011 -21.65013 -21.01600 -20.39528 -19.42492 -18.75825 -17.71811 -17.56569 -17.14121 -16.75594 -16.25098 -15.64729 -15.53205 -15.39004 -14.54042 -14.46151 -14.18519 -14.01607 -14.00510 -13.73002 -13.48808 -13.34846 -13.14015 -13.00228 -12.84128 -12.78459 -12.75147 -12.36204 -12.12306 -12.01361 -11.53174 -11.33000 -11.23672 -10.78425 -10.73927 -10.37519 -10.11377 -9.99229 -9.79491 -9.65343 -9.57750 -9.41745 -9.29550 -8.92574 -8.34591 -8.06423 -6.92554 -5.70562 -3.00517 2.21961 2.23222 2.62227 2.90518 3.03573 3.28642 3.43224 3.47817 3.53160 3.55391 4.04233 4.17554 4.44225 4.56044 4.58618 4.66713 4.70751 4.79658 4.94704 4.96075 4.98266 5.14874 5.15544 5.18971 5.31896 5.34476 5.46854 5.50412 5.67663 5.75618 5.81566 5.85083 5.97934 6.01949 6.32188 6.41449 6.45739 6.45917 6.50748 6.62703 6.66976 6.96427 6.99346 7.36351 7.75488 7.75660 7.96527 8.28429 8.40341 8.46225 9.58364 10.13143 10.48631 11.51231 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008445 B = 0.003708 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.895623 B = 7548.536133 C = 9863.222658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.468 5.468 3 C 0.178 3.822 4 N -0.469 5.469 5 C 0.041 3.959 6 C -0.027 4.027 7 H 0.100 0.900 8 C 0.111 3.889 9 N -0.602 5.602 10 C 0.546 3.454 11 O -0.539 6.539 12 C -0.149 4.149 13 H 0.125 0.875 14 C -0.121 4.121 15 C 0.103 3.897 16 N -0.732 5.732 17 C 0.537 3.463 18 O -0.514 6.514 19 C 0.081 3.919 20 C 0.188 3.812 21 H 0.062 0.938 22 N -0.704 5.704 23 C -0.244 4.244 24 H 0.070 0.930 25 C -0.007 4.007 26 N -0.925 5.925 27 Si 0.905 3.095 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 C -0.067 4.067 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.201 0.799 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.413 0.587 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.390 0.610 46 H 0.255 0.745 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.898 -11.758 -15.413 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.152 5.152 3 C -0.104 4.104 4 N -0.186 5.186 5 C -0.089 4.089 6 C -0.048 4.048 7 H 0.118 0.882 8 C -0.013 4.013 9 N -0.335 5.335 10 C 0.332 3.668 11 O -0.416 6.416 12 C -0.174 4.174 13 H 0.143 0.857 14 C -0.159 4.159 15 C -0.021 4.021 16 N -0.389 5.389 17 C 0.321 3.679 18 O -0.388 6.388 19 C -0.044 4.044 20 C 0.075 3.925 21 H 0.080 0.920 22 N -0.343 5.343 23 C -0.375 4.375 24 H 0.088 0.912 25 C -0.204 4.204 26 N -0.572 5.572 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.219 1.219 31 C -0.198 4.198 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.218 0.782 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.252 0.748 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.225 0.775 46 H 0.065 0.935 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.633 -11.241 -14.956 25.709 hybrid contribution -0.503 -0.350 0.539 0.817 sum -18.137 -11.591 -14.416 25.906 Atomic orbital electron populations 1.21960 0.77194 1.04160 1.03367 1.45344 1.07222 1.07106 1.55539 1.24979 0.85489 0.93443 1.06471 1.70205 1.18922 1.11481 1.18031 1.20138 0.92701 0.90422 1.05604 1.20718 0.94520 0.91892 0.97678 0.88206 1.22087 0.96786 0.86390 0.96086 1.48411 1.52366 1.05784 1.26913 1.19228 0.81856 0.81253 0.84442 1.90703 1.42829 1.52845 1.55221 1.22119 0.99850 1.00794 0.94601 0.85677 1.22674 1.03329 0.92656 0.97260 1.22093 0.90643 0.96831 0.92582 1.46150 1.40118 1.22063 1.30521 1.20250 0.82436 0.81286 0.83946 1.90819 1.33960 1.44609 1.69414 1.23546 0.98152 0.97152 0.85580 1.21337 0.93615 0.88242 0.89307 0.91977 1.42234 1.53737 1.34604 1.03774 1.19237 1.23236 1.12373 0.82650 0.91155 1.24737 0.99831 0.98058 0.97778 1.69685 1.33290 1.20062 1.34163 0.86156 0.77315 0.77094 0.85825 1.20577 1.21812 1.21944 1.22266 0.90930 0.92226 1.14410 0.90776 0.89722 0.90032 0.78214 0.90755 0.91649 0.87975 0.88592 0.89804 0.90757 0.74823 0.90783 0.90985 0.77479 0.93517 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 11.18 59.85 0.67 1.15 16 2 N -0.47 -5.40 3.15 -125.99 -0.40 -5.80 16 3 C 0.18 2.47 12.56 -90.37 -1.14 1.33 16 4 N -0.47 -8.60 11.25 -10.87 -0.12 -8.72 16 5 C 0.04 0.69 6.11 -82.86 -0.51 0.19 16 6 C -0.03 -0.47 3.11 -89.80 -0.28 -0.75 16 7 H 0.10 1.92 8.00 -51.93 -0.42 1.50 16 8 C 0.11 1.57 5.73 -3.06 -0.02 1.56 16 9 N -0.60 -9.95 3.33 -170.52 -0.57 -10.52 16 10 C 0.55 8.81 6.81 -10.99 -0.07 8.73 16 11 O -0.54 -10.52 16.19 5.56 0.09 -10.43 16 12 C -0.15 -1.67 2.96 -91.78 -0.27 -1.94 16 13 H 0.13 1.08 6.91 -51.93 -0.36 0.72 16 14 C -0.12 -0.93 6.66 -25.10 -0.17 -1.10 16 15 C 0.10 0.56 7.78 -3.12 -0.02 0.54 16 16 N -0.73 -6.25 6.25 -59.14 -0.37 -6.62 16 17 C 0.54 6.92 7.87 -10.75 -0.08 6.83 16 18 O -0.51 -8.90 17.86 5.56 0.10 -8.80 16 19 C 0.08 1.59 6.59 -2.53 -0.02 1.57 16 20 C 0.19 3.82 3.13 -65.65 -0.21 3.62 16 21 H 0.06 1.28 8.03 -51.92 -0.42 0.87 16 22 N -0.70 -17.96 5.28 -51.22 -0.27 -18.23 16 23 C -0.24 -6.85 9.98 -15.06 -0.15 -7.00 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.92 -28.47 13.06 55.49 0.72 -27.75 16 27 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 31 C -0.07 -0.88 10.53 -16.56 -0.17 -1.05 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.73 5.62 -51.93 -0.29 0.43 16 38 H 0.10 1.00 7.06 -51.93 -0.37 0.64 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.41 2.81 8.96 -40.82 -0.37 2.44 16 43 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 44 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 45 H 0.39 10.79 7.72 -40.82 -0.32 10.48 16 46 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.17 1.71 7.10 -52.48 -0.37 1.34 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -39.76 390.55 -9.16 -48.92 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.67 Total: 10.89 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -2.53 Total: 13.36 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -1.00 Total: -77.63 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.19 Total: -19.23 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.76 -9.16 -48.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070520897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.711 kcal (2) G-P(sol) polarization free energy of solvation -39.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds