Wall clock time and date at job start Wed Apr 1 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35051 * 126.39553 * 2 1 4 4 N 1.30500 * 108.69683 * 179.76386 * 3 2 1 5 5 C 1.34118 * 109.25818 * 0.38389 * 4 3 2 6 6 C 1.50703 * 125.98988 * 179.88440 * 5 4 3 7 7 H 1.08997 * 110.77714 * 336.46953 * 6 5 4 8 8 C 1.54328 * 110.71951 * 213.23498 * 6 5 4 9 9 N 1.47021 * 107.40273 * 219.51936 * 8 6 5 10 10 C 1.34771 * 125.64955 * 178.82891 * 9 8 6 11 11 O 1.21282 * 120.00171 * 174.98208 * 10 9 8 12 12 C 1.50696 * 120.00048 * 354.98256 * 10 9 8 13 13 H 1.08999 * 110.43572 * 337.22035 * 12 10 9 14 14 C 1.54625 * 110.48866 * 214.67520 * 12 10 9 15 15 C 1.54486 * 101.76496 * 216.52595 * 14 12 10 16 16 N 1.46760 * 105.47307 * 25.41523 * 15 14 12 17 17 C 1.34652 * 111.33849 * 342.86631 * 16 15 14 18 18 O 1.21281 * 125.07378 * 180.51168 * 17 16 15 19 19 C 1.47427 * 108.70160 * 358.85973 * 9 8 6 20 20 C 1.54912 * 104.82962 * 24.13090 * 19 9 8 21 21 H 1.09011 * 111.00481 * 81.06372 * 20 19 9 22 22 N 1.46502 * 111.00527 * 204.87274 * 20 19 9 23 23 C 1.36933 * 119.99992 * 273.55209 * 22 20 19 24 24 H 1.07996 * 120.00462 * 359.97438 * 23 22 20 25 25 C 1.38821 * 119.99985 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99580 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00184 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47389 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47234 * 119.99842 * 27 25 23 30 30 H 1.48503 * 109.47322 * 239.99949 * 27 25 23 31 31 C 1.34668 * 108.02384 * 359.61684 * 5 4 3 32 32 H 1.08995 * 109.47186 * 269.99569 * 1 2 3 33 33 H 1.09002 * 109.47338 * 30.00106 * 1 2 3 34 34 H 1.09000 * 109.46750 * 150.00134 * 1 2 3 35 35 H 1.08002 * 125.64735 * 359.97438 * 3 2 1 36 36 H 1.08998 * 109.88139 * 100.02543 * 8 6 5 37 37 H 1.09003 * 109.88462 * 339.01603 * 8 6 5 38 38 H 1.09003 * 110.97078 * 334.64152 * 14 12 10 39 39 H 1.08991 * 110.97411 * 98.40521 * 14 12 10 40 40 H 1.09000 * 110.24559 * 144.41542 * 15 14 12 41 41 H 1.09004 * 110.24254 * 266.32113 * 15 14 12 42 42 H 0.97005 * 124.35007 * 162.98355 * 16 15 14 43 43 H 1.09002 * 110.36270 * 142.96704 * 19 9 8 44 44 H 1.08995 * 110.37209 * 265.28982 * 19 9 8 45 45 H 0.97003 * 119.99759 * 93.54486 * 22 20 19 46 46 H 0.97002 * 120.00050 * 180.02562 * 26 25 23 47 47 H 1.08004 * 126.59331 * 180.24852 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5096 0.6903 0.0051 5 6 3.5461 -0.6503 0.0000 6 6 4.7891 -1.5024 0.0009 7 1 5.6377 -0.9488 -0.4010 8 6 4.5595 -2.8039 -0.7961 9 7 5.2302 -3.8901 -0.0669 10 6 5.2425 -5.1884 -0.4285 11 8 5.9050 -5.9866 0.1998 12 6 4.4331 -5.6482 -1.6135 13 1 3.6181 -4.9518 -1.8111 14 6 3.8814 -7.0724 -1.3723 15 6 3.9759 -7.6903 -2.7851 16 7 5.0427 -6.9477 -3.4666 17 6 5.3153 -5.7906 -2.8343 18 8 6.1464 -4.9816 -3.1889 19 6 5.8865 -3.3241 1.1257 20 6 5.1013 -2.0241 1.4309 21 1 4.1819 -2.2414 1.9747 22 7 5.9320 -1.0701 2.1699 23 6 6.0021 -1.1377 3.5358 24 1 5.4447 -1.8940 4.0683 25 6 6.7897 -0.2341 4.2360 26 7 7.4694 0.6873 3.5869 27 14 6.8847 -0.3258 6.0992 28 1 6.0333 -1.4419 6.5840 29 1 8.2917 -0.5605 6.5122 30 1 6.4042 0.9523 6.6830 31 6 2.2773 -1.1017 0.0000 32 1 -0.3633 -0.0001 1.0276 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 1.9334 2.1145 -0.0004 36 1 4.9873 -2.7078 -1.7940 37 1 3.4917 -3.0104 -0.8691 38 1 4.5062 -7.6182 -0.6653 39 1 2.8472 -7.0374 -1.0303 40 1 4.2353 -8.7468 -2.7182 41 1 3.0311 -7.5672 -3.3145 42 1 5.4927 -7.2505 -4.2708 43 1 5.8132 -4.0172 1.9638 44 1 6.9305 -3.0954 0.9117 45 1 6.4325 -0.3906 1.6916 46 1 8.0200 1.3185 4.0761 47 1 1.9614 -2.1345 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070520897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:25 Heat of formation + Delta-G solvation = -5.679899 kcal Electronic energy + Delta-G solvation = -31137.226026 eV Core-core repulsion = 26934.592604 eV Total energy + Delta-G solvation = -4202.633422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.93540 -41.97125 -40.39777 -38.80184 -37.40835 -35.95515 -34.96329 -33.52674 -32.49439 -32.18680 -29.86271 -29.10040 -28.44362 -27.46682 -25.97500 -24.52119 -23.13817 -22.63798 -22.01071 -21.84596 -20.70163 -19.98016 -19.16624 -18.66213 -18.40218 -17.84081 -17.42033 -16.89045 -16.60352 -16.42263 -16.27344 -15.54843 -15.41059 -15.25628 -14.96244 -14.88009 -14.79051 -14.59045 -14.46498 -14.31777 -13.90431 -13.69213 -13.51713 -13.45657 -13.28786 -13.12387 -12.94997 -12.80974 -12.62600 -12.50042 -12.13336 -12.08481 -11.79038 -11.76518 -11.19325 -11.08393 -10.98361 -10.69335 -10.32898 -10.10298 -9.74936 -9.26396 -8.95966 -7.93329 -5.23815 1.17673 1.22464 1.44951 1.46943 1.49443 1.56659 1.90910 2.10902 2.26670 2.44890 2.55551 3.18694 3.33743 3.39198 3.41023 3.61271 3.83551 3.95169 4.02587 4.05000 4.09840 4.12294 4.16301 4.28383 4.34000 4.41052 4.50525 4.55824 4.59181 4.63896 4.80394 4.81838 4.82425 4.91439 4.98787 5.00462 5.11533 5.23007 5.33366 5.42236 5.51112 5.76416 5.89620 5.92212 6.25898 6.43974 6.46855 6.98213 7.13457 7.32550 7.34953 8.04934 8.29494 9.29914 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008445 B = 0.003708 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.895623 B = 7548.536133 C = 9863.222658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C 0.173 3.827 4 N -0.536 5.536 5 C -0.003 4.003 6 C -0.016 4.016 7 H 0.065 0.935 8 C 0.122 3.878 9 N -0.604 5.604 10 C 0.539 3.461 11 O -0.580 6.580 12 C -0.142 4.142 13 H 0.160 0.840 14 C -0.117 4.117 15 C 0.103 3.897 16 N -0.717 5.717 17 C 0.523 3.477 18 O -0.573 6.573 19 C 0.093 3.907 20 C 0.190 3.810 21 H 0.066 0.934 22 N -0.718 5.718 23 C -0.242 4.242 24 H 0.077 0.923 25 C -0.072 4.072 26 N -0.966 5.966 27 Si 0.972 3.028 28 H -0.264 1.264 29 H -0.295 1.295 30 H -0.293 1.293 31 C -0.044 4.044 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.230 0.770 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.134 0.866 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.421 0.579 43 H 0.060 0.940 44 H 0.039 0.961 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.691 -14.024 -16.458 32.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.141 5.141 3 C -0.109 4.109 4 N -0.254 5.254 5 C -0.132 4.132 6 C -0.037 4.037 7 H 0.083 0.917 8 C -0.001 4.001 9 N -0.335 5.335 10 C 0.328 3.672 11 O -0.461 6.461 12 C -0.166 4.166 13 H 0.177 0.823 14 C -0.155 4.155 15 C -0.020 4.020 16 N -0.373 5.373 17 C 0.308 3.692 18 O -0.453 6.453 19 C -0.034 4.034 20 C 0.078 3.922 21 H 0.083 0.917 22 N -0.356 5.356 23 C -0.373 4.373 24 H 0.095 0.905 25 C -0.264 4.264 26 N -0.616 5.616 27 Si 0.801 3.199 28 H -0.189 1.189 29 H -0.222 1.222 30 H -0.220 1.220 31 C -0.178 4.178 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.261 0.739 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -22.536 -13.599 -16.045 30.826 hybrid contribution 0.905 0.281 0.789 1.233 sum -21.631 -13.319 -15.256 29.632 Atomic orbital electron populations 1.22372 0.73614 1.06666 1.04614 1.45632 1.09212 1.05826 1.53459 1.25466 0.84806 0.95191 1.05466 1.70081 1.22011 1.12889 1.20417 1.20081 0.93590 0.90268 1.09301 1.20452 0.94512 0.93275 0.95421 0.91677 1.22127 0.99101 0.83937 0.94888 1.48456 1.52317 1.06796 1.25978 1.20185 0.81518 0.80278 0.85245 1.90677 1.44635 1.53814 1.56938 1.22209 0.99443 1.03756 0.91207 0.82304 1.22802 1.04723 0.89696 0.98268 1.22434 0.91171 0.97269 0.91084 1.46227 1.40097 1.20638 1.30302 1.20623 0.82083 0.81840 0.84629 1.90792 1.36539 1.46867 1.71063 1.23018 0.96640 0.96839 0.86879 1.21421 0.92525 0.87403 0.90816 0.91657 1.42367 1.54462 1.35368 1.03375 1.19620 1.22124 1.11637 0.83956 0.90547 1.25570 1.00264 0.98260 1.02336 1.69859 1.34713 1.21266 1.35748 0.85099 0.77076 0.77306 0.80425 1.18850 1.22185 1.21973 1.22668 0.89727 0.94015 1.11361 0.90051 0.87473 0.87483 0.75428 0.90653 0.87021 0.90518 0.84732 0.87637 0.86889 0.73851 0.92126 0.94301 0.79361 0.94089 0.77774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 11.18 127.77 1.43 1.97 16 2 N -0.46 -9.13 3.15 -552.52 -1.74 -10.87 16 3 C 0.17 4.58 12.56 180.26 2.26 6.85 16 4 N -0.54 -19.99 11.25 -188.31 -2.12 -22.11 16 5 C 0.00 -0.12 6.11 41.39 0.25 0.14 16 6 C -0.02 -0.57 3.11 -10.27 -0.03 -0.60 16 7 H 0.06 2.74 8.00 -2.39 -0.02 2.72 16 8 C 0.12 3.38 5.73 86.73 0.50 3.87 16 9 N -0.60 -20.08 3.33 -811.79 -2.70 -22.78 16 10 C 0.54 17.18 6.81 87.66 0.60 17.77 16 11 O -0.58 -23.19 16.19 -3.04 -0.05 -23.24 16 12 C -0.14 -2.80 2.96 -11.55 -0.03 -2.84 16 13 H 0.16 1.98 6.91 -2.39 -0.02 1.97 16 14 C -0.12 -1.34 6.66 31.65 0.21 -1.13 16 15 C 0.10 0.64 7.78 86.84 0.68 1.31 16 16 N -0.72 -10.25 6.25 -459.47 -2.87 -13.12 16 17 C 0.52 12.75 7.87 87.86 0.69 13.44 16 18 O -0.57 -20.15 17.86 -3.03 -0.05 -20.20 16 19 C 0.09 3.85 6.59 86.86 0.57 4.43 16 20 C 0.19 8.02 3.13 46.47 0.15 8.16 16 21 H 0.07 2.72 8.03 -2.38 -0.02 2.70 16 22 N -0.72 -38.70 5.28 -315.96 -1.67 -40.37 16 23 C -0.24 -14.02 9.98 84.04 0.84 -13.18 16 24 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 25 C -0.07 -4.31 5.50 84.87 0.47 -3.84 16 26 N -0.97 -62.21 13.06 21.65 0.28 -61.93 16 27 Si 0.97 48.13 29.55 68.60 2.03 50.16 16 28 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 29 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 30 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 31 C -0.04 -1.02 10.53 83.09 0.87 -0.15 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.11 0.36 8.14 -2.39 -0.02 0.35 16 35 H 0.23 4.21 8.06 -2.91 -0.02 4.19 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.11 2.05 5.62 -2.39 -0.01 2.03 16 38 H 0.08 1.34 7.06 -2.39 -0.02 1.32 16 39 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 42 H 0.42 4.73 8.96 -92.70 -0.83 3.90 16 43 H 0.06 2.64 8.09 -2.39 -0.02 2.62 16 44 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.37 22.29 7.72 -92.71 -0.72 21.58 16 46 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.21 3.06 7.10 -2.91 -0.02 3.04 16 Total: -1.00 -96.29 390.55 0.04 -96.26 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.52 Total: 32.01 kcal Atomic # 6 Polarization: 26.75 SS G_CDS: 9.45 Total: 36.20 kcal Atomic # 7 Polarization: -160.36 SS G_CDS: -10.82 Total: -171.18 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -0.10 Total: -43.44 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -96.29 0.04 -96.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070520897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.578 kcal (2) G-P(sol) polarization free energy of solvation -96.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds