Wall clock time and date at job start Wed Apr 1 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35043 * 126.39526 * 2 1 4 4 N 1.30501 * 108.69743 * 179.76847 * 3 2 1 5 5 C 1.34132 * 109.25380 * 0.37322 * 4 3 2 6 6 C 1.50697 * 125.98543 * 179.88165 * 5 4 3 7 7 H 1.08997 * 110.78257 * 331.46029 * 6 5 4 8 8 C 1.54329 * 110.72032 * 208.21733 * 6 5 4 9 9 N 1.47021 * 107.26916 * 219.44769 * 8 6 5 10 10 C 1.34780 * 125.64563 * 178.98738 * 9 8 6 11 11 O 1.21280 * 119.99978 * 354.47323 * 10 9 8 12 12 C 1.50703 * 120.00090 * 174.48001 * 10 9 8 13 13 C 1.50699 * 115.54567 * 297.32900 * 12 10 9 14 14 N 1.34774 * 119.99883 * 293.87620 * 13 12 10 15 15 O 1.21279 * 119.99978 * 113.88491 * 13 12 10 16 16 C 1.52995 * 117.49742 * 151.65728 * 12 10 9 17 17 C 1.53001 * 117.49895 * 82.99585 * 12 10 9 18 18 C 1.47426 * 108.70799 * 358.94237 * 9 8 6 19 19 C 1.54908 * 104.82967 * 24.12441 * 18 9 8 20 20 H 1.09006 * 111.03425 * 81.08100 * 19 18 9 21 21 N 1.46499 * 111.00729 * 204.91720 * 19 18 9 22 22 C 1.36935 * 120.00317 * 267.20717 * 21 19 18 23 23 H 1.08003 * 119.99615 * 359.97438 * 22 21 19 24 24 C 1.38803 * 120.00291 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00009 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00344 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47561 * 270.00491 * 26 24 22 28 28 H 1.48507 * 109.46859 * 30.00132 * 26 24 22 29 29 H 1.48500 * 109.47024 * 150.00040 * 26 24 22 30 30 C 1.34664 * 108.02003 * 359.62487 * 5 4 3 31 31 H 1.09007 * 109.47217 * 270.00254 * 1 2 3 32 32 H 1.08995 * 109.47461 * 29.99894 * 1 2 3 33 33 H 1.09000 * 109.47377 * 150.00634 * 1 2 3 34 34 H 1.08004 * 125.65039 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.87758 * 338.86163 * 8 6 5 36 36 H 1.08994 * 109.87873 * 99.87213 * 8 6 5 37 37 H 0.97004 * 120.00386 * 355.02129 * 14 13 12 38 38 H 0.96998 * 120.00018 * 175.01271 * 14 13 12 39 39 H 1.08992 * 117.50422 * 359.97438 * 16 12 10 40 40 H 1.08999 * 117.49593 * 145.02241 * 16 12 10 41 41 H 1.08995 * 117.49575 * 214.97959 * 17 12 10 42 42 H 1.08995 * 117.49986 * 0.02562 * 17 12 10 43 43 H 1.09002 * 110.36237 * 265.29041 * 18 9 8 44 44 H 1.09001 * 110.36874 * 142.96710 * 18 9 8 45 45 H 0.96998 * 120.00102 * 87.19505 * 21 19 18 46 46 H 0.97006 * 120.00080 * 180.02562 * 25 24 22 47 47 H 1.08005 * 126.59195 * 180.23967 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0050 5 6 3.5460 -0.6505 0.0001 6 6 4.7890 -1.5025 0.0008 7 1 5.6157 -0.9810 -0.4815 8 6 4.5224 -2.8578 -0.6876 9 7 5.2330 -3.8871 0.0851 10 6 5.2343 -5.2083 -0.1815 11 8 4.5325 -5.6489 -1.0670 12 6 6.1077 -6.1380 0.6209 13 6 7.5907 -5.8941 0.5098 14 7 8.2207 -6.0958 -0.6644 15 8 8.2173 -5.5165 1.4771 16 6 5.6397 -7.5860 0.7792 17 6 5.5708 -6.6246 1.9684 18 6 5.9447 -3.2347 1.1993 19 6 5.1700 -1.9163 1.4469 20 1 4.2794 -2.0932 2.0501 21 7 6.0322 -0.9098 2.0711 22 6 6.0704 -0.7917 3.4349 23 1 5.4645 -1.4403 4.0502 24 6 6.8877 0.1616 4.0264 25 7 7.6265 0.9517 3.2765 26 14 6.9392 0.3232 5.8866 27 1 5.9067 1.2950 6.3280 28 1 6.6708 -0.9995 6.5060 29 1 8.2811 0.8026 6.3049 30 6 2.2772 -1.1017 0.0001 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8900 -0.5137 34 1 1.9334 2.1145 -0.0004 35 1 3.4530 -3.0683 -0.6899 36 1 4.8976 -2.8339 -1.7107 37 1 7.7351 -6.4664 -1.4180 38 1 9.1596 -5.8703 -0.7561 39 1 4.7000 -7.8661 0.3035 40 1 6.4045 -8.3623 0.8035 41 1 6.2902 -6.7688 2.7744 42 1 4.5857 -6.2726 2.2744 43 1 6.9759 -3.0216 0.9176 44 1 5.9159 -3.8645 2.0885 45 1 6.5763 -0.3272 1.5185 46 1 8.1980 1.6177 3.6899 47 1 1.9612 -2.1345 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070529635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:01 Heat of formation + Delta-G solvation = 48.022736 kcal Electronic energy + Delta-G solvation = -31473.904981 eV Core-core repulsion = 27273.600280 eV Total energy + Delta-G solvation = -4200.304701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.85094 -40.67934 -39.00059 -37.62280 -35.87276 -34.07960 -33.88466 -33.63453 -31.79669 -30.60867 -28.38352 -27.39750 -26.91470 -25.50483 -23.88270 -23.08741 -22.58203 -21.41247 -20.84354 -20.63623 -19.29061 -18.94881 -17.77887 -17.37826 -17.04523 -16.73776 -15.93648 -15.77209 -15.58630 -15.49214 -14.87409 -14.36562 -14.18316 -14.15448 -13.96620 -13.57230 -13.43897 -13.29268 -13.10524 -12.93114 -12.72109 -12.61365 -12.41608 -12.15227 -11.78037 -11.38452 -11.29965 -11.17202 -10.79196 -10.75609 -10.70316 -10.36667 -10.17746 -10.02616 -9.75093 -9.72176 -9.61448 -9.53181 -9.26380 -8.92570 -8.42592 -8.04664 -6.92538 -5.70269 -2.99925 2.26426 2.35348 2.59524 2.93070 2.97255 3.27986 3.46927 3.48567 3.53188 3.54903 3.71422 4.42527 4.60198 4.61165 4.63283 4.68348 4.73183 4.80142 4.98946 5.00363 5.16771 5.22624 5.23502 5.37168 5.40890 5.51581 5.61654 5.68300 5.70371 5.75327 5.85468 5.94655 5.96119 6.03581 6.31863 6.40544 6.42835 6.48374 6.49663 6.68937 6.90532 7.02327 7.20387 7.40411 7.66232 7.75135 8.16884 8.18721 8.44229 8.46407 9.58525 10.12350 10.47725 11.51556 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006910 B = 0.004810 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4051.406976 B = 5819.574456 C = 8833.099270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.468 5.468 3 C 0.177 3.823 4 N -0.467 5.467 5 C 0.040 3.960 6 C -0.030 4.030 7 H 0.097 0.903 8 C 0.121 3.879 9 N -0.601 5.601 10 C 0.569 3.431 11 O -0.545 6.545 12 C -0.192 4.192 13 C 0.561 3.439 14 N -0.849 5.849 15 O -0.516 6.516 16 C -0.131 4.131 17 C -0.126 4.126 18 C 0.072 3.928 19 C 0.190 3.810 20 H 0.066 0.934 21 N -0.700 5.700 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.006 4.006 25 N -0.925 5.925 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.281 1.281 29 H -0.291 1.291 30 C -0.066 4.066 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.201 0.799 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.403 0.597 38 H 0.405 0.595 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.389 0.611 46 H 0.255 0.745 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 -11.923 -10.570 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.152 5.152 3 C -0.105 4.105 4 N -0.184 5.184 5 C -0.090 4.090 6 C -0.051 4.051 7 H 0.115 0.885 8 C -0.002 4.002 9 N -0.333 5.333 10 C 0.355 3.645 11 O -0.424 6.424 12 C -0.198 4.198 13 C 0.343 3.657 14 N -0.413 5.413 15 O -0.390 6.390 16 C -0.169 4.169 17 C -0.164 4.164 18 C -0.054 4.054 19 C 0.076 3.924 20 H 0.084 0.916 21 N -0.339 5.339 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.203 4.203 25 N -0.573 5.573 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.207 1.207 29 H -0.218 1.218 30 C -0.198 4.198 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.218 0.782 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.231 0.769 38 H 0.236 0.764 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.224 0.776 46 H 0.065 0.935 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.901 -11.400 -10.095 18.726 hybrid contribution -0.319 -0.083 0.467 0.571 sum -11.219 -11.483 -9.628 18.720 Atomic orbital electron populations 1.21961 0.77213 1.04185 1.03329 1.45346 1.07226 1.07106 1.55548 1.24982 0.85513 0.93429 1.06608 1.70218 1.18829 1.11402 1.17905 1.20108 0.92633 0.90447 1.05808 1.20766 0.94259 0.91418 0.98691 0.88486 1.21937 0.97043 0.86311 0.94935 1.48446 1.49283 1.05063 1.30552 1.18605 0.81887 0.80923 0.83046 1.90678 1.42837 1.75899 1.32966 1.21370 0.93339 0.99656 1.05474 1.19029 0.86971 0.76546 0.83110 1.43737 1.15359 1.68198 1.14047 1.90830 1.66818 1.44451 1.36905 1.23092 1.03741 0.89146 1.00924 1.23090 1.03128 0.99946 0.90241 1.23700 0.97241 0.96710 0.87735 1.21253 0.93189 0.87760 0.90218 0.91603 1.42192 1.49467 1.37899 1.04296 1.19175 1.20837 1.14746 0.82611 0.91267 1.24714 0.99433 0.98529 0.97598 1.69671 1.30319 1.23551 1.33725 0.86235 0.76853 0.77614 0.85739 1.21845 1.20707 1.21758 1.22322 0.90984 0.92258 1.14237 0.90806 0.89727 0.90007 0.78241 0.91230 0.91411 0.76872 0.76396 0.86838 0.87603 0.86670 0.87321 0.90997 0.90469 0.77592 0.93498 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 11.18 59.85 0.67 1.21 16 2 N -0.47 -5.82 3.15 -125.99 -0.40 -6.22 16 3 C 0.18 2.57 12.56 -90.37 -1.14 1.44 16 4 N -0.47 -8.83 11.25 -10.87 -0.12 -8.95 16 5 C 0.04 0.70 6.15 -82.85 -0.51 0.19 16 6 C -0.03 -0.53 3.12 -89.94 -0.28 -0.81 16 7 H 0.10 1.83 8.00 -51.93 -0.42 1.41 16 8 C 0.12 1.83 6.41 -3.06 -0.02 1.81 16 9 N -0.60 -9.55 3.33 -170.52 -0.57 -10.11 16 10 C 0.57 8.67 7.11 -10.98 -0.08 8.59 16 11 O -0.55 -9.15 16.96 5.56 0.09 -9.06 16 12 C -0.19 -2.54 1.48 -156.81 -0.23 -2.77 16 13 C 0.56 7.95 6.69 -10.99 -0.07 7.88 16 14 N -0.85 -8.79 8.87 31.22 0.28 -8.51 16 15 O -0.52 -9.40 17.55 5.56 0.10 -9.31 16 16 C -0.13 -1.33 9.75 -26.69 -0.26 -1.59 16 17 C -0.13 -1.48 9.33 -26.69 -0.25 -1.73 16 18 C 0.07 1.32 5.80 -2.53 -0.01 1.31 16 19 C 0.19 3.81 3.15 -65.78 -0.21 3.60 16 20 H 0.07 1.37 7.99 -51.93 -0.41 0.96 16 21 N -0.70 -17.63 5.24 -51.35 -0.27 -17.90 16 22 C -0.24 -6.77 9.96 -15.06 -0.15 -6.92 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 26 Si 0.90 22.81 29.55 -169.99 -5.02 17.79 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 C -0.07 -0.95 10.56 -16.57 -0.17 -1.12 16 31 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.20 2.14 8.06 -52.48 -0.42 1.71 16 35 H 0.07 0.98 5.93 -51.93 -0.31 0.67 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 3.32 8.83 -40.82 -0.36 2.96 16 38 H 0.40 3.67 8.93 -40.82 -0.36 3.30 16 39 H 0.11 1.11 7.95 -51.93 -0.41 0.70 16 40 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.12 1.37 8.01 -51.93 -0.42 0.96 16 42 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.08 1.46 7.39 -51.93 -0.38 1.08 16 45 H 0.39 10.64 7.76 -40.82 -0.32 10.32 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.17 2.03 6.88 -52.48 -0.36 1.67 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -37.43 397.90 -8.68 -46.11 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -6.68 Total: 16.99 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -2.81 Total: 10.81 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -0.35 Total: -79.33 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.19 Total: -18.36 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.43 -8.68 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070529635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.132 kcal (2) G-P(sol) polarization free energy of solvation -37.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds