Wall clock time and date at job start Wed Apr 1 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35043 * 126.39526 * 2 1 4 4 N 1.30501 * 108.69743 * 179.76847 * 3 2 1 5 5 C 1.34132 * 109.25380 * 0.37322 * 4 3 2 6 6 C 1.50697 * 125.98543 * 179.88165 * 5 4 3 7 7 H 1.08997 * 110.78257 * 331.46029 * 6 5 4 8 8 C 1.54329 * 110.72032 * 208.21733 * 6 5 4 9 9 N 1.47021 * 107.26916 * 219.44769 * 8 6 5 10 10 C 1.34780 * 125.64563 * 178.98738 * 9 8 6 11 11 O 1.21280 * 119.99978 * 354.47323 * 10 9 8 12 12 C 1.50703 * 120.00090 * 174.48001 * 10 9 8 13 13 C 1.50699 * 115.54567 * 297.32900 * 12 10 9 14 14 N 1.34774 * 119.99883 * 293.87620 * 13 12 10 15 15 O 1.21279 * 119.99978 * 113.88491 * 13 12 10 16 16 C 1.52995 * 117.49742 * 151.65728 * 12 10 9 17 17 C 1.53001 * 117.49895 * 82.99585 * 12 10 9 18 18 C 1.47426 * 108.70799 * 358.94237 * 9 8 6 19 19 C 1.54908 * 104.82967 * 24.12441 * 18 9 8 20 20 H 1.09006 * 111.03425 * 81.08100 * 19 18 9 21 21 N 1.46499 * 111.00729 * 204.91720 * 19 18 9 22 22 C 1.36935 * 120.00317 * 267.20717 * 21 19 18 23 23 H 1.08003 * 119.99615 * 359.97438 * 22 21 19 24 24 C 1.38803 * 120.00291 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00009 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00344 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47561 * 270.00491 * 26 24 22 28 28 H 1.48507 * 109.46859 * 30.00132 * 26 24 22 29 29 H 1.48500 * 109.47024 * 150.00040 * 26 24 22 30 30 C 1.34664 * 108.02003 * 359.62487 * 5 4 3 31 31 H 1.09007 * 109.47217 * 270.00254 * 1 2 3 32 32 H 1.08995 * 109.47461 * 29.99894 * 1 2 3 33 33 H 1.09000 * 109.47377 * 150.00634 * 1 2 3 34 34 H 1.08004 * 125.65039 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.87758 * 338.86163 * 8 6 5 36 36 H 1.08994 * 109.87873 * 99.87213 * 8 6 5 37 37 H 0.97004 * 120.00386 * 355.02129 * 14 13 12 38 38 H 0.96998 * 120.00018 * 175.01271 * 14 13 12 39 39 H 1.08992 * 117.50422 * 359.97438 * 16 12 10 40 40 H 1.08999 * 117.49593 * 145.02241 * 16 12 10 41 41 H 1.08995 * 117.49575 * 214.97959 * 17 12 10 42 42 H 1.08995 * 117.49986 * 0.02562 * 17 12 10 43 43 H 1.09002 * 110.36237 * 265.29041 * 18 9 8 44 44 H 1.09001 * 110.36874 * 142.96710 * 18 9 8 45 45 H 0.96998 * 120.00102 * 87.19505 * 21 19 18 46 46 H 0.97006 * 120.00080 * 180.02562 * 25 24 22 47 47 H 1.08005 * 126.59195 * 180.23967 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0050 5 6 3.5460 -0.6505 0.0001 6 6 4.7890 -1.5025 0.0008 7 1 5.6157 -0.9810 -0.4815 8 6 4.5224 -2.8578 -0.6876 9 7 5.2330 -3.8871 0.0851 10 6 5.2343 -5.2083 -0.1815 11 8 4.5325 -5.6489 -1.0670 12 6 6.1077 -6.1380 0.6209 13 6 7.5907 -5.8941 0.5098 14 7 8.2207 -6.0958 -0.6644 15 8 8.2173 -5.5165 1.4771 16 6 5.6397 -7.5860 0.7792 17 6 5.5708 -6.6246 1.9684 18 6 5.9447 -3.2347 1.1993 19 6 5.1700 -1.9163 1.4469 20 1 4.2794 -2.0932 2.0501 21 7 6.0322 -0.9098 2.0711 22 6 6.0704 -0.7917 3.4349 23 1 5.4645 -1.4403 4.0502 24 6 6.8877 0.1616 4.0264 25 7 7.6265 0.9517 3.2765 26 14 6.9392 0.3232 5.8866 27 1 5.9067 1.2950 6.3280 28 1 6.6708 -0.9995 6.5060 29 1 8.2811 0.8026 6.3049 30 6 2.2772 -1.1017 0.0001 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8900 -0.5137 34 1 1.9334 2.1145 -0.0004 35 1 3.4530 -3.0683 -0.6899 36 1 4.8976 -2.8339 -1.7107 37 1 7.7351 -6.4664 -1.4180 38 1 9.1596 -5.8703 -0.7561 39 1 4.7000 -7.8661 0.3035 40 1 6.4045 -8.3623 0.8035 41 1 6.2902 -6.7688 2.7744 42 1 4.5857 -6.2726 2.2744 43 1 6.9759 -3.0216 0.9176 44 1 5.9159 -3.8645 2.0885 45 1 6.5763 -0.3272 1.5185 46 1 8.1980 1.6177 3.6899 47 1 1.9612 -2.1345 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070529635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:00 Heat of formation + Delta-G solvation = 19.725702 kcal Electronic energy + Delta-G solvation = -31475.132033 eV Core-core repulsion = 27273.600280 eV Total energy + Delta-G solvation = -4201.531753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.97287 -41.84053 -40.25206 -38.98524 -36.93901 -35.86968 -35.01727 -34.66580 -33.36431 -32.31378 -29.65748 -28.95397 -27.82572 -26.61808 -25.71371 -24.44621 -23.46523 -22.57519 -22.19088 -21.93784 -20.61675 -20.08770 -19.19980 -18.94516 -18.13214 -17.93482 -17.22969 -17.03806 -16.83303 -16.45109 -16.29108 -15.86953 -15.51824 -15.31187 -15.17884 -14.93589 -14.82877 -14.63641 -14.49488 -14.14698 -13.95631 -13.74902 -13.48952 -13.34086 -13.08269 -12.92095 -12.65415 -12.60031 -12.49010 -12.22023 -12.14575 -11.86449 -11.76653 -11.65343 -11.29225 -11.03824 -10.84666 -10.76498 -10.72038 -10.36378 -9.79196 -9.30693 -8.93489 -7.90987 -5.20429 1.17436 1.18610 1.44974 1.46465 1.48587 1.56557 1.75022 2.06151 2.24307 2.32873 2.56564 2.71020 3.19728 3.38209 3.50332 3.66950 3.72052 3.81658 3.86617 3.91732 4.02073 4.08883 4.10511 4.26142 4.31588 4.39373 4.50112 4.53756 4.58989 4.64851 4.66910 4.75731 4.76851 4.85547 4.92127 5.00707 5.10509 5.10710 5.31061 5.38444 5.52012 5.77812 5.85367 6.27710 6.27892 6.34255 6.41781 6.92125 7.19862 7.30821 7.35302 8.06944 8.31556 9.32079 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006910 B = 0.004810 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4051.406976 B = 5819.574456 C = 8833.099270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C 0.175 3.825 4 N -0.530 5.530 5 C 0.000 4.000 6 C -0.017 4.017 7 H 0.072 0.928 8 C 0.129 3.871 9 N -0.601 5.601 10 C 0.575 3.425 11 O -0.554 6.554 12 C -0.214 4.214 13 C 0.559 3.441 14 N -0.830 5.830 15 O -0.566 6.566 16 C -0.099 4.099 17 C -0.132 4.132 18 C 0.097 3.903 19 C 0.187 3.813 20 H 0.061 0.939 21 N -0.712 5.712 22 C -0.239 4.239 23 H 0.075 0.925 24 C -0.070 4.070 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.288 1.288 28 H -0.268 1.268 29 H -0.296 1.296 30 C -0.051 4.051 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.231 0.769 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.416 0.584 38 H 0.412 0.588 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 -13.911 -11.093 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.108 4.108 4 N -0.249 5.249 5 C -0.129 4.129 6 C -0.038 4.038 7 H 0.090 0.910 8 C 0.006 3.994 9 N -0.333 5.333 10 C 0.363 3.637 11 O -0.433 6.433 12 C -0.220 4.220 13 C 0.342 3.658 14 N -0.394 5.394 15 O -0.444 6.444 16 C -0.136 4.136 17 C -0.169 4.169 18 C -0.029 4.029 19 C 0.075 3.925 20 H 0.079 0.921 21 N -0.350 5.350 22 C -0.370 4.370 23 H 0.093 0.907 24 C -0.262 4.262 25 N -0.615 5.615 26 Si 0.797 3.203 27 H -0.215 1.215 28 H -0.193 1.193 29 H -0.223 1.223 30 C -0.185 4.185 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.248 0.752 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.247 0.753 38 H 0.244 0.756 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.709 -13.461 -10.683 21.983 hybrid contribution 0.412 0.490 0.511 0.819 sum -13.297 -12.971 -10.172 21.178 Atomic orbital electron populations 1.22362 0.73730 1.06517 1.04655 1.45621 1.09188 1.05844 1.53595 1.25513 0.84835 0.95120 1.05331 1.70112 1.21791 1.12631 1.20317 1.20144 0.93580 0.90372 1.08831 1.20510 0.94204 0.92696 0.96409 0.90988 1.21921 0.98027 0.84673 0.94799 1.48395 1.49294 1.05665 1.29975 1.18833 0.81646 0.80466 0.82786 1.90673 1.43417 1.75838 1.33389 1.21366 0.92350 1.01572 1.06751 1.19240 0.87398 0.75913 0.83262 1.43616 1.15785 1.66687 1.13353 1.90809 1.67898 1.46940 1.38705 1.23247 1.04406 0.87613 0.98356 1.23164 1.03073 1.00676 0.90035 1.23076 0.95697 0.95780 0.88359 1.21357 0.92137 0.87335 0.91621 0.92073 1.42275 1.50191 1.39004 1.03502 1.19547 1.19668 1.13837 0.83981 0.90725 1.25505 0.99924 0.98926 1.01891 1.69839 1.31701 1.24630 1.35339 0.85222 0.76365 0.77944 0.80743 1.21537 1.19305 1.22283 1.22595 0.90165 0.93687 1.12040 0.89888 0.87223 0.88036 0.75238 0.89358 0.90505 0.75329 0.75575 0.85839 0.85360 0.87166 0.86852 0.93499 0.91025 0.79355 0.94150 0.78892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 11.18 127.77 1.43 2.15 16 2 N -0.46 -10.35 3.15 -552.52 -1.74 -12.09 16 3 C 0.17 4.90 12.56 180.26 2.26 7.16 16 4 N -0.53 -20.44 11.25 -188.32 -2.12 -22.56 16 5 C 0.00 -0.01 6.15 41.39 0.25 0.25 16 6 C -0.02 -0.62 3.12 -10.35 -0.03 -0.65 16 7 H 0.07 2.91 8.00 -2.39 -0.02 2.89 16 8 C 0.13 3.78 6.41 86.73 0.56 4.34 16 9 N -0.60 -18.71 3.33 -811.79 -2.70 -21.41 16 10 C 0.57 16.59 7.11 87.66 0.62 17.21 16 11 O -0.55 -17.19 16.96 -3.03 -0.05 -17.24 16 12 C -0.21 -5.34 1.48 -53.67 -0.08 -5.42 16 13 C 0.56 15.53 6.69 87.66 0.59 16.11 16 14 N -0.83 -16.22 8.87 -173.54 -1.54 -17.76 16 15 O -0.57 -20.97 17.55 -3.03 -0.05 -21.02 16 16 C -0.10 -1.71 9.75 30.62 0.30 -1.41 16 17 C -0.13 -2.90 9.33 30.62 0.29 -2.61 16 18 C 0.10 3.66 5.80 86.85 0.50 4.17 16 19 C 0.19 7.75 3.15 46.38 0.15 7.90 16 20 H 0.06 2.58 7.99 -2.38 -0.02 2.56 16 21 N -0.71 -37.48 5.24 -316.38 -1.66 -39.14 16 22 C -0.24 -13.66 9.96 84.03 0.84 -12.83 16 23 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 25 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 26 Si 0.97 47.84 29.55 68.60 2.03 49.86 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 29 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 30 C -0.05 -1.37 10.56 83.09 0.88 -0.49 16 31 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.23 4.54 8.06 -2.91 -0.02 4.51 16 35 H 0.09 2.29 5.93 -2.39 -0.01 2.27 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.42 6.03 8.83 -92.71 -0.82 5.21 16 38 H 0.41 7.13 8.93 -92.71 -0.83 6.30 16 39 H 0.12 1.96 7.95 -2.39 -0.02 1.94 16 40 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.11 2.55 8.01 -2.39 -0.02 2.53 16 42 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 2.77 7.39 -2.39 -0.02 2.75 16 45 H 0.37 21.72 7.76 -92.71 -0.72 21.00 16 46 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 47 H 0.19 4.04 6.88 -2.91 -0.02 4.02 16 Total: -1.00 -84.63 397.90 0.14 -84.49 By element: Atomic # 1 Polarization: 47.15 SS G_CDS: -1.33 Total: 45.83 kcal Atomic # 6 Polarization: 23.17 SS G_CDS: 9.02 Total: 32.18 kcal Atomic # 7 Polarization: -164.63 SS G_CDS: -9.48 Total: -174.11 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.10 Total: -38.26 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -84.63 0.14 -84.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070529635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.219 kcal (2) G-P(sol) polarization free energy of solvation -84.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds