Wall clock time and date at job start Wed Apr 1 2020 05:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35044 * 126.39451 * 2 1 4 4 N 1.30502 * 108.69573 * 180.02562 * 3 2 1 5 5 C 1.34126 * 109.25722 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.98696 * 180.02562 * 5 4 3 7 7 H 1.09005 * 110.30698 * 335.74693 * 6 5 4 8 8 C 1.54392 * 110.34273 * 213.57742 * 6 5 4 9 9 N 1.48149 * 104.71916 * 217.20494 * 8 6 5 10 10 C 1.34777 * 127.83552 * 219.64164 * 9 8 6 11 11 O 1.21274 * 120.00286 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99766 * 180.02562 * 10 9 8 13 13 H 1.09001 * 115.55378 * 42.81710 * 12 10 9 14 14 C 1.53002 * 117.49874 * 188.52855 * 12 10 9 15 15 C 1.53002 * 60.00165 * 107.48765 * 14 12 10 16 16 H 1.09000 * 117.51754 * 107.48108 * 15 14 12 17 17 C 1.50702 * 117.49675 * 252.51142 * 15 14 12 18 18 N 1.34781 * 119.99642 * 153.23591 * 17 15 14 19 19 O 1.21279 * 120.00009 * 333.23123 * 17 15 14 20 20 C 1.48441 * 104.17923 * 39.57119 * 9 8 6 21 21 C 1.54282 * 110.34262 * 98.03945 * 6 5 4 22 22 H 1.09001 * 110.34241 * 359.97438 * 21 6 5 23 23 N 1.46505 * 110.34152 * 237.73964 * 21 6 5 24 24 C 1.36935 * 119.99891 * 154.99969 * 23 21 6 25 25 H 1.08003 * 120.00341 * 359.97438 * 24 23 21 26 26 C 1.38816 * 120.00042 * 180.02562 * 24 23 21 27 27 N 1.31627 * 119.99842 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00168 * 180.02562 * 26 24 23 29 29 H 1.48492 * 109.46996 * 59.99762 * 28 26 24 30 30 H 1.48497 * 109.46951 * 179.97438 * 28 26 24 31 31 H 1.48499 * 109.46992 * 299.99669 * 28 26 24 32 32 C 1.34664 * 108.02360 * 0.26673 * 5 4 3 33 33 H 1.09007 * 109.47439 * 89.97321 * 1 2 3 34 34 H 1.09007 * 109.47307 * 209.97163 * 1 2 3 35 35 H 1.08995 * 109.47283 * 329.96975 * 1 2 3 36 36 H 1.07997 * 125.65360 * 0.02562 * 3 2 1 37 37 H 1.08997 * 110.40114 * 336.04304 * 8 6 5 38 38 H 1.08996 * 110.40851 * 98.35743 * 8 6 5 39 39 H 1.09004 * 117.49630 * 214.98146 * 14 12 10 40 40 H 1.08998 * 117.49635 * 359.97438 * 14 12 10 41 41 H 0.96995 * 119.99905 * 359.97438 * 18 17 15 42 42 H 0.96993 * 119.99608 * 180.02562 * 18 17 15 43 43 H 1.09003 * 110.38466 * 201.65132 * 20 9 8 44 44 H 1.08993 * 110.49444 * 79.28684 * 20 9 8 45 45 H 0.96996 * 119.99993 * 334.99936 * 23 21 6 46 46 H 0.96991 * 119.99494 * 180.02562 * 27 26 24 47 47 H 1.07996 * 126.59400 * 179.69399 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5460 -0.6505 -0.0004 6 6 4.7890 -1.5025 -0.0003 7 1 5.6280 -0.9476 -0.4203 8 6 4.5498 -2.8009 -0.8007 9 7 5.2901 -3.8449 -0.0545 10 6 6.0182 -4.8613 -0.5577 11 8 6.1216 -4.9970 -1.7584 12 6 6.7029 -5.8300 0.3718 13 1 6.1116 -6.1598 1.2260 14 6 7.6730 -6.8380 -0.2479 15 6 8.2104 -5.6666 0.5769 16 1 8.6107 -5.8890 1.5660 17 6 8.8967 -4.5495 -0.1661 18 7 8.9087 -3.3045 0.3502 19 8 9.4382 -4.7707 -1.2285 20 6 5.0473 -3.5135 1.3719 21 6 5.1171 -1.9724 1.4321 22 1 4.3794 -1.5866 2.1358 23 7 6.4629 -1.5381 1.8149 24 6 6.7799 -1.3762 3.1372 25 1 6.0377 -1.5682 3.8979 26 6 8.0549 -0.9641 3.4999 27 7 8.9593 -0.7296 2.5727 28 14 8.4876 -0.7439 5.3037 29 1 8.3115 -2.0349 6.0161 30 1 9.9001 -0.3016 5.4234 31 1 7.5953 0.2793 5.9054 32 6 2.2772 -1.1018 -0.0056 33 1 -0.3634 0.0005 -1.0277 34 1 -0.3634 -0.8903 0.5134 35 1 -0.3633 0.8897 0.5143 36 1 1.9334 2.1144 0.0004 37 1 3.4863 -3.0377 -0.8316 38 1 4.9460 -2.7028 -1.8113 39 1 7.7198 -7.8313 0.1986 40 1 7.8155 -6.8007 -1.3279 41 1 8.4753 -3.1276 1.1997 42 1 9.3501 -2.5854 -0.1282 43 1 5.8210 -3.9538 2.0010 44 1 4.0622 -3.8618 1.6823 45 1 7.1294 -1.3652 1.1317 46 1 9.8503 -0.4420 2.8262 47 1 1.9613 -2.1345 -0.0115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070535718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:14 Heat of formation + Delta-G solvation = 44.284646 kcal Electronic energy + Delta-G solvation = -31982.619192 eV Core-core repulsion = 27782.152395 eV Total energy + Delta-G solvation = -4200.466797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.01982 -40.17940 -38.75539 -37.48367 -35.46785 -34.12280 -33.99465 -32.75551 -31.76862 -30.69393 -28.44269 -27.46672 -26.94321 -25.19114 -24.18738 -23.59694 -22.32647 -21.08933 -20.80327 -19.81217 -19.35655 -18.57100 -17.67581 -17.12178 -16.82125 -16.33308 -15.92114 -15.74658 -15.60313 -15.14038 -14.82108 -14.65761 -14.25581 -14.11043 -13.55295 -13.45022 -13.39989 -13.28216 -13.07921 -12.93960 -12.82859 -12.69785 -12.16686 -11.90590 -11.71203 -11.51748 -11.13753 -10.89503 -10.79761 -10.63410 -10.50830 -10.46044 -10.20728 -9.85401 -9.69000 -9.62502 -9.45497 -9.39209 -9.12840 -8.86533 -8.40247 -8.22411 -7.07523 -5.90229 -3.19116 2.10331 2.68824 2.79406 3.11463 3.17561 3.29827 3.36316 3.42541 3.44096 3.84150 4.19452 4.45930 4.50748 4.64252 4.72071 4.85401 4.86046 4.86498 4.99562 5.08030 5.10381 5.22565 5.29250 5.33283 5.50967 5.55458 5.62740 5.66581 5.77439 5.79691 5.81944 5.89355 6.00725 6.19257 6.23651 6.28994 6.33981 6.44041 6.49509 6.82005 6.91242 7.23814 7.52311 7.59856 7.88035 8.18436 8.26080 8.28612 8.47561 8.94421 9.40544 9.93118 10.30291 11.31141 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007628 B = 0.005000 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.872894 B = 5598.910736 C = 8327.631936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.468 5.468 3 C 0.177 3.823 4 N -0.477 5.477 5 C 0.034 3.966 6 C -0.029 4.029 7 H 0.096 0.904 8 C 0.117 3.883 9 N -0.609 5.609 10 C 0.561 3.439 11 O -0.539 6.539 12 C -0.165 4.165 13 H 0.130 0.870 14 C -0.119 4.119 15 C -0.159 4.159 16 H 0.136 0.864 17 C 0.539 3.461 18 N -0.825 5.825 19 O -0.554 6.554 20 C 0.071 3.929 21 C 0.181 3.819 22 H 0.069 0.931 23 N -0.711 5.711 24 C -0.245 4.245 25 H 0.071 0.929 26 C -0.006 4.006 27 N -0.927 5.927 28 Si 0.905 3.095 29 H -0.287 1.287 30 H -0.292 1.292 31 H -0.288 1.288 32 C -0.063 4.063 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.202 0.798 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.421 0.579 42 H 0.403 0.597 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.385 0.615 46 H 0.258 0.742 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.310 -4.551 -1.749 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.152 5.152 3 C -0.105 4.105 4 N -0.194 5.194 5 C -0.096 4.096 6 C -0.050 4.050 7 H 0.115 0.885 8 C -0.007 4.007 9 N -0.342 5.342 10 C 0.349 3.651 11 O -0.417 6.417 12 C -0.187 4.187 13 H 0.148 0.852 14 C -0.157 4.157 15 C -0.181 4.181 16 H 0.153 0.847 17 C 0.322 3.678 18 N -0.389 5.389 19 O -0.433 6.433 20 C -0.054 4.054 21 C 0.068 3.932 22 H 0.087 0.913 23 N -0.352 5.352 24 C -0.376 4.376 25 H 0.089 0.911 26 C -0.202 4.202 27 N -0.574 5.574 28 Si 0.737 3.263 29 H -0.214 1.214 30 H -0.218 1.218 31 H -0.214 1.214 32 C -0.195 4.195 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.218 0.782 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.254 0.746 42 H 0.233 0.767 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.220 0.780 46 H 0.068 0.932 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.341 -4.455 -2.868 16.230 hybrid contribution -0.496 0.338 1.398 1.521 sum -15.837 -4.117 -1.471 16.429 Atomic orbital electron populations 1.21981 0.77042 1.04476 1.03255 1.45370 1.07330 1.07118 1.55354 1.24989 0.85515 0.93501 1.06534 1.70230 1.18992 1.11668 1.18509 1.20318 0.93037 0.90346 1.05878 1.20696 0.94051 0.92661 0.97636 0.88547 1.22291 0.95721 0.86086 0.96595 1.48811 1.49407 1.26964 1.09010 1.19108 0.77902 0.80168 0.87913 1.90705 1.61851 1.73670 1.15430 1.22210 0.91922 1.01977 1.02562 0.85176 1.22986 0.97940 0.93132 1.01593 1.22294 0.94036 0.99233 1.02541 0.84661 1.19462 0.79680 0.83855 0.84833 1.43980 1.58173 1.09196 1.27545 1.90692 1.46535 1.83554 1.22535 1.23652 1.00483 1.00191 0.81120 1.21108 0.89965 0.89883 0.92229 0.91307 1.42478 1.07515 1.79666 1.05511 1.19188 0.95779 1.38936 0.83699 0.91137 1.24681 0.96443 1.01852 0.97268 1.69569 1.04458 1.52159 1.31222 0.86308 0.77210 0.77796 0.85022 1.21381 1.21785 1.21436 1.22363 0.90874 0.92357 1.13873 0.90820 0.89845 0.89629 0.78166 0.91444 0.90240 0.87259 0.86585 0.74624 0.76691 0.89341 0.92186 0.77968 0.93200 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.18 59.84 0.67 1.07 16 2 N -0.47 -4.85 3.15 -126.00 -0.40 -5.24 16 3 C 0.18 2.19 12.56 -90.37 -1.14 1.05 16 4 N -0.48 -8.02 11.25 -10.87 -0.12 -8.15 16 5 C 0.03 0.53 5.87 -82.85 -0.49 0.04 16 6 C -0.03 -0.48 3.34 -90.37 -0.30 -0.78 16 7 H 0.10 1.88 7.68 -51.93 -0.40 1.48 16 8 C 0.12 1.76 6.53 -2.41 -0.02 1.74 16 9 N -0.61 -9.59 3.33 -169.07 -0.56 -10.15 16 10 C 0.56 9.80 6.70 -10.99 -0.07 9.72 16 11 O -0.54 -11.35 16.56 5.56 0.09 -11.26 16 12 C -0.17 -2.39 5.14 -91.77 -0.47 -2.86 16 13 H 0.13 1.49 8.07 -51.93 -0.42 1.07 16 14 C -0.12 -1.66 9.56 -26.73 -0.26 -1.91 16 15 C -0.16 -2.45 6.18 -91.77 -0.57 -3.02 16 16 H 0.14 1.75 8.14 -51.93 -0.42 1.33 16 17 C 0.54 10.45 6.79 -10.98 -0.07 10.38 16 18 N -0.83 -15.85 8.87 31.22 0.28 -15.57 16 19 O -0.55 -12.65 17.43 5.56 0.10 -12.55 16 20 C 0.07 1.06 6.63 -2.24 -0.01 1.05 16 21 C 0.18 3.15 3.36 -66.53 -0.22 2.93 16 22 H 0.07 1.26 7.65 -51.93 -0.40 0.86 16 23 N -0.71 -15.20 4.79 -52.07 -0.25 -15.45 16 24 C -0.25 -5.85 9.96 -15.06 -0.15 -6.00 16 25 H 0.07 1.65 7.83 -52.48 -0.41 1.24 16 26 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 27 N -0.93 -24.07 13.06 55.49 0.72 -23.35 16 28 Si 0.91 20.49 29.55 -169.99 -5.02 15.47 16 29 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 30 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 31 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 32 C -0.06 -0.76 10.55 -16.56 -0.17 -0.94 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.07 0.85 6.13 -51.93 -0.32 0.53 16 38 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 39 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.12 1.94 7.47 -51.93 -0.39 1.55 16 41 H 0.42 8.40 7.89 -40.82 -0.32 8.08 16 42 H 0.40 7.94 8.93 -40.82 -0.36 7.57 16 43 H 0.09 1.39 7.33 -51.93 -0.38 1.01 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.39 8.92 6.96 -40.82 -0.28 8.64 16 46 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 47 H 0.17 1.64 7.05 -52.49 -0.37 1.27 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -33.60 395.25 -9.14 -42.73 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -6.56 Total: 25.33 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -3.37 Total: 12.23 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -0.33 Total: -77.91 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.19 Total: -23.81 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.60 -9.14 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070535718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.019 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds