Wall clock time and date at job start Wed Apr 1 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35044 * 126.39451 * 2 1 4 4 N 1.30502 * 108.69573 * 180.02562 * 3 2 1 5 5 C 1.34126 * 109.25722 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.98696 * 180.02562 * 5 4 3 7 7 H 1.09005 * 110.30698 * 335.74693 * 6 5 4 8 8 C 1.54392 * 110.34273 * 213.57742 * 6 5 4 9 9 N 1.48149 * 104.71916 * 217.20494 * 8 6 5 10 10 C 1.34777 * 127.83552 * 219.64164 * 9 8 6 11 11 O 1.21274 * 120.00286 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99766 * 180.02562 * 10 9 8 13 13 H 1.09001 * 115.55378 * 42.81710 * 12 10 9 14 14 C 1.53002 * 117.49874 * 188.52855 * 12 10 9 15 15 C 1.53002 * 60.00165 * 107.48765 * 14 12 10 16 16 H 1.09000 * 117.51754 * 107.48108 * 15 14 12 17 17 C 1.50702 * 117.49675 * 252.51142 * 15 14 12 18 18 N 1.34781 * 119.99642 * 153.23591 * 17 15 14 19 19 O 1.21279 * 120.00009 * 333.23123 * 17 15 14 20 20 C 1.48441 * 104.17923 * 39.57119 * 9 8 6 21 21 C 1.54282 * 110.34262 * 98.03945 * 6 5 4 22 22 H 1.09001 * 110.34241 * 359.97438 * 21 6 5 23 23 N 1.46505 * 110.34152 * 237.73964 * 21 6 5 24 24 C 1.36935 * 119.99891 * 154.99969 * 23 21 6 25 25 H 1.08003 * 120.00341 * 359.97438 * 24 23 21 26 26 C 1.38816 * 120.00042 * 180.02562 * 24 23 21 27 27 N 1.31627 * 119.99842 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00168 * 180.02562 * 26 24 23 29 29 H 1.48492 * 109.46996 * 59.99762 * 28 26 24 30 30 H 1.48497 * 109.46951 * 179.97438 * 28 26 24 31 31 H 1.48499 * 109.46992 * 299.99669 * 28 26 24 32 32 C 1.34664 * 108.02360 * 0.26673 * 5 4 3 33 33 H 1.09007 * 109.47439 * 89.97321 * 1 2 3 34 34 H 1.09007 * 109.47307 * 209.97163 * 1 2 3 35 35 H 1.08995 * 109.47283 * 329.96975 * 1 2 3 36 36 H 1.07997 * 125.65360 * 0.02562 * 3 2 1 37 37 H 1.08997 * 110.40114 * 336.04304 * 8 6 5 38 38 H 1.08996 * 110.40851 * 98.35743 * 8 6 5 39 39 H 1.09004 * 117.49630 * 214.98146 * 14 12 10 40 40 H 1.08998 * 117.49635 * 359.97438 * 14 12 10 41 41 H 0.96995 * 119.99905 * 359.97438 * 18 17 15 42 42 H 0.96993 * 119.99608 * 180.02562 * 18 17 15 43 43 H 1.09003 * 110.38466 * 201.65132 * 20 9 8 44 44 H 1.08993 * 110.49444 * 79.28684 * 20 9 8 45 45 H 0.96996 * 119.99993 * 334.99936 * 23 21 6 46 46 H 0.96991 * 119.99494 * 180.02562 * 27 26 24 47 47 H 1.07996 * 126.59400 * 179.69399 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5460 -0.6505 -0.0004 6 6 4.7890 -1.5025 -0.0003 7 1 5.6280 -0.9476 -0.4203 8 6 4.5498 -2.8009 -0.8007 9 7 5.2901 -3.8449 -0.0545 10 6 6.0182 -4.8613 -0.5577 11 8 6.1216 -4.9970 -1.7584 12 6 6.7029 -5.8300 0.3718 13 1 6.1116 -6.1598 1.2260 14 6 7.6730 -6.8380 -0.2479 15 6 8.2104 -5.6666 0.5769 16 1 8.6107 -5.8890 1.5660 17 6 8.8967 -4.5495 -0.1661 18 7 8.9087 -3.3045 0.3502 19 8 9.4382 -4.7707 -1.2285 20 6 5.0473 -3.5135 1.3719 21 6 5.1171 -1.9724 1.4321 22 1 4.3794 -1.5866 2.1358 23 7 6.4629 -1.5381 1.8149 24 6 6.7799 -1.3762 3.1372 25 1 6.0377 -1.5682 3.8979 26 6 8.0549 -0.9641 3.4999 27 7 8.9593 -0.7296 2.5727 28 14 8.4876 -0.7439 5.3037 29 1 8.3115 -2.0349 6.0161 30 1 9.9001 -0.3016 5.4234 31 1 7.5953 0.2793 5.9054 32 6 2.2772 -1.1018 -0.0056 33 1 -0.3634 0.0005 -1.0277 34 1 -0.3634 -0.8903 0.5134 35 1 -0.3633 0.8897 0.5143 36 1 1.9334 2.1144 0.0004 37 1 3.4863 -3.0377 -0.8316 38 1 4.9460 -2.7028 -1.8113 39 1 7.7198 -7.8313 0.1986 40 1 7.8155 -6.8007 -1.3279 41 1 8.4753 -3.1276 1.1997 42 1 9.3501 -2.5854 -0.1282 43 1 5.8210 -3.9538 2.0010 44 1 4.0622 -3.8618 1.6823 45 1 7.1294 -1.3652 1.1317 46 1 9.8503 -0.4420 2.8262 47 1 1.9613 -2.1345 -0.0115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070535718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:13 Heat of formation + Delta-G solvation = 19.603597 kcal Electronic energy + Delta-G solvation = -31983.689442 eV Core-core repulsion = 27782.152395 eV Total energy + Delta-G solvation = -4201.537048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.97751 -41.52015 -40.19693 -38.90784 -36.79007 -35.68580 -34.99378 -34.34859 -33.18551 -32.19142 -29.49931 -28.85402 -27.76411 -26.45712 -25.62620 -25.10194 -23.48733 -22.14343 -21.97279 -21.18092 -20.60013 -19.89640 -19.08798 -18.58745 -17.91582 -17.81648 -17.35338 -17.03585 -16.68222 -16.36254 -16.18354 -16.03309 -15.53235 -15.24120 -14.99281 -14.82743 -14.77470 -14.68835 -14.28898 -14.12062 -13.72861 -13.48059 -13.31241 -13.23015 -13.12102 -12.84862 -12.72437 -12.46367 -12.33816 -12.10464 -11.90506 -11.72318 -11.60795 -11.57321 -11.08652 -10.99114 -10.80693 -10.75459 -10.49005 -10.38060 -9.76213 -9.27446 -8.79036 -7.80485 -5.07572 1.19315 1.35381 1.56207 1.59023 1.63092 1.67046 1.89649 2.07394 2.23107 2.54860 2.65704 2.90016 3.47769 3.50380 3.54119 3.70835 3.77606 3.87750 3.98838 4.04974 4.11317 4.14527 4.16328 4.35741 4.37237 4.42546 4.53820 4.54734 4.65664 4.72917 4.76665 4.80383 4.85864 4.88091 4.99103 5.09970 5.19386 5.23068 5.38881 5.46633 5.69204 5.87055 5.90320 6.37857 6.42041 6.58578 6.62144 7.14187 7.29571 7.37142 7.47727 8.17356 8.44722 9.40097 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007628 B = 0.005000 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.872894 B = 5598.910736 C = 8327.631936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C 0.176 3.824 4 N -0.541 5.541 5 C -0.008 4.008 6 C -0.016 4.016 7 H 0.050 0.950 8 C 0.122 3.878 9 N -0.605 5.605 10 C 0.550 3.450 11 O -0.585 6.585 12 C -0.158 4.158 13 H 0.174 0.826 14 C -0.108 4.108 15 C -0.170 4.170 16 H 0.168 0.832 17 C 0.531 3.469 18 N -0.822 5.822 19 O -0.598 6.598 20 C 0.083 3.917 21 C 0.179 3.821 22 H 0.066 0.934 23 N -0.720 5.720 24 C -0.232 4.232 25 H 0.078 0.922 26 C -0.057 4.057 27 N -0.951 5.951 28 Si 0.957 3.043 29 H -0.275 1.275 30 H -0.308 1.308 31 H -0.293 1.293 32 C -0.043 4.043 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.232 0.768 37 H 0.103 0.897 38 H 0.054 0.946 39 H 0.157 0.843 40 H 0.081 0.919 41 H 0.419 0.581 42 H 0.394 0.606 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.373 0.627 46 H 0.247 0.753 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.017 -6.385 0.169 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.106 4.106 4 N -0.260 5.260 5 C -0.136 4.136 6 C -0.038 4.038 7 H 0.069 0.931 8 C -0.001 4.001 9 N -0.336 5.336 10 C 0.339 3.661 11 O -0.466 6.466 12 C -0.178 4.178 13 H 0.191 0.809 14 C -0.145 4.145 15 C -0.191 4.191 16 H 0.186 0.814 17 C 0.316 3.684 18 N -0.383 5.383 19 O -0.480 6.480 20 C -0.042 4.042 21 C 0.068 3.932 22 H 0.083 0.917 23 N -0.360 5.360 24 C -0.364 4.364 25 H 0.096 0.904 26 C -0.250 4.250 27 N -0.601 5.601 28 Si 0.789 3.211 29 H -0.201 1.201 30 H -0.235 1.235 31 H -0.220 1.220 32 C -0.177 4.177 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.248 0.752 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.175 0.825 40 H 0.100 0.900 41 H 0.252 0.748 42 H 0.223 0.777 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.206 0.794 46 H 0.056 0.944 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -19.149 -6.296 -0.909 20.178 hybrid contribution 0.510 1.051 0.724 1.375 sum -18.639 -5.245 -0.185 19.364 Atomic orbital electron populations 1.22371 0.73640 1.06418 1.04874 1.45647 1.09226 1.05911 1.53410 1.25512 0.84736 0.95211 1.05189 1.70112 1.22033 1.12866 1.20982 1.20233 0.93806 0.90268 1.09342 1.20395 0.93570 0.93026 0.96780 0.93149 1.22306 0.97369 0.85412 0.95027 1.48865 1.48806 1.26419 1.09554 1.19741 0.77646 0.80804 0.87867 1.90687 1.63348 1.74992 1.17559 1.22396 0.91294 1.01052 1.03103 0.80909 1.23106 0.96679 0.94894 0.99844 1.22378 0.94603 0.98355 1.03752 0.81442 1.20251 0.79111 0.84562 0.84498 1.44009 1.57760 1.09325 1.27189 1.90661 1.48540 1.84214 1.24573 1.23554 1.02741 0.97577 0.80328 1.21260 0.87696 0.91708 0.92548 0.91656 1.42595 1.08848 1.80082 1.04426 1.19472 0.95461 1.36676 0.84809 0.90400 1.25222 0.96911 1.03185 0.99706 1.69712 1.04169 1.53994 1.32198 0.85473 0.75688 0.77788 0.82172 1.20087 1.23464 1.22038 1.22668 0.89774 0.93949 1.11262 0.89308 0.88097 0.87643 0.75151 0.87883 0.92687 0.82518 0.90000 0.74802 0.77676 0.89536 0.87896 0.79426 0.94367 0.78103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.18 127.77 1.43 1.86 16 2 N -0.46 -8.12 3.15 -552.54 -1.74 -9.86 16 3 C 0.18 4.09 12.56 180.26 2.26 6.36 16 4 N -0.54 -18.41 11.25 -188.32 -2.12 -20.53 16 5 C -0.01 -0.23 5.87 41.39 0.24 0.01 16 6 C -0.02 -0.55 3.34 -10.63 -0.04 -0.58 16 7 H 0.05 2.13 7.68 -2.38 -0.02 2.11 16 8 C 0.12 3.63 6.53 86.54 0.56 4.19 16 9 N -0.60 -18.23 3.33 -807.20 -2.69 -20.91 16 10 C 0.55 18.71 6.70 87.66 0.59 19.30 16 11 O -0.59 -25.08 16.56 -3.01 -0.05 -25.13 16 12 C -0.16 -4.12 5.14 -11.54 -0.06 -4.18 16 13 H 0.17 3.04 8.07 -2.39 -0.02 3.02 16 14 C -0.11 -2.76 9.56 30.60 0.29 -2.47 16 15 C -0.17 -4.93 6.18 -11.54 -0.07 -5.00 16 16 H 0.17 3.77 8.14 -2.39 -0.02 3.75 16 17 C 0.53 21.05 6.79 87.66 0.60 21.64 16 18 N -0.82 -32.90 8.87 -173.53 -1.54 -34.44 16 19 O -0.60 -28.50 17.43 -3.03 -0.05 -28.55 16 20 C 0.08 2.23 6.63 86.48 0.57 2.80 16 21 C 0.18 6.10 3.36 45.90 0.15 6.26 16 22 H 0.07 2.30 7.65 -2.39 -0.02 2.28 16 23 N -0.72 -31.17 4.79 -318.64 -1.53 -32.70 16 24 C -0.23 -11.03 9.96 84.03 0.84 -10.20 16 25 H 0.08 3.54 7.83 -2.91 -0.02 3.51 16 26 C -0.06 -2.85 5.50 84.86 0.47 -2.38 16 27 N -0.95 -50.92 13.06 21.65 0.28 -50.63 16 28 Si 0.96 42.27 29.55 68.60 2.03 44.30 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H -0.31 -14.27 7.11 99.48 0.71 -13.57 16 31 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 32 C -0.04 -0.92 10.55 83.08 0.88 -0.04 16 33 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.10 0.35 8.14 -2.38 -0.02 0.34 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.23 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.10 2.32 6.13 -2.39 -0.01 2.30 16 38 H 0.05 1.90 7.88 -2.39 -0.02 1.89 16 39 H 0.16 2.49 8.14 -2.38 -0.02 2.48 16 40 H 0.08 2.73 7.47 -2.39 -0.02 2.72 16 41 H 0.42 17.16 7.89 -92.71 -0.73 16.43 16 42 H 0.39 16.70 8.93 -92.71 -0.83 15.87 16 43 H 0.09 2.44 7.33 -2.39 -0.02 2.42 16 44 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.37 18.03 6.96 -92.71 -0.65 17.39 16 46 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 47 H 0.20 2.90 7.05 -2.91 -0.02 2.88 16 Total: -1.00 -79.66 395.25 0.15 -79.51 By element: Atomic # 1 Polarization: 62.55 SS G_CDS: -1.16 Total: 61.38 kcal Atomic # 6 Polarization: 28.85 SS G_CDS: 8.72 Total: 37.57 kcal Atomic # 7 Polarization: -159.75 SS G_CDS: -9.33 Total: -169.08 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.10 Total: -53.68 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -79.66 0.15 -79.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070535718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.110 kcal (2) G-P(sol) polarization free energy of solvation -79.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds