Wall clock time and date at job start Wed Apr 1 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35040 * 126.39602 * 2 1 4 4 N 1.30496 * 108.70135 * 180.02562 * 3 2 1 5 5 C 1.34126 * 109.25628 * 359.75092 * 4 3 2 6 6 C 1.34675 * 108.02061 * 0.40089 * 5 4 3 7 7 C 1.50689 * 126.59360 * 179.86939 * 6 5 4 8 8 H 1.09000 * 110.80412 * 201.40270 * 7 6 5 9 9 C 1.54600 * 110.83282 * 78.25320 * 7 6 5 10 10 N 1.48117 * 103.42383 * 204.44915 * 9 7 6 11 11 C 1.34779 * 127.03393 * 219.29001 * 10 9 7 12 12 O 1.21285 * 120.00058 * 359.69967 * 11 10 9 13 13 C 1.50697 * 120.00242 * 179.70922 * 11 10 9 14 14 H 1.09001 * 110.21589 * 320.46685 * 13 11 10 15 15 C 1.54831 * 110.33243 * 82.41779 * 13 11 10 16 16 C 1.54631 * 101.60220 * 93.62136 * 15 13 11 17 17 C 1.51281 * 104.31067 * 24.82962 * 16 15 13 18 18 O 1.21284 * 124.93855 * 163.71942 * 17 16 15 19 19 N 1.34418 * 110.11952 * 343.67722 * 17 16 15 20 20 C 1.47486 * 105.93397 * 39.01843 * 10 9 7 21 21 C 1.54003 * 107.08547 * 334.78489 * 20 10 9 22 22 H 1.08995 * 110.33056 * 120.30058 * 21 20 10 23 23 N 1.46500 * 110.32394 * 242.41133 * 21 20 10 24 24 C 1.36938 * 119.99728 * 273.54286 * 23 21 20 25 25 H 1.07996 * 120.00347 * 0.02562 * 24 23 21 26 26 C 1.38819 * 119.99400 * 180.02562 * 24 23 21 27 27 N 1.31624 * 119.99634 * 180.02562 * 26 24 23 28 28 Si 1.86795 * 120.00550 * 0.02562 * 26 24 23 29 29 H 1.48500 * 109.47301 * 89.99668 * 28 26 24 30 30 H 1.48498 * 109.47268 * 209.99984 * 28 26 24 31 31 H 1.48508 * 109.46940 * 329.99733 * 28 26 24 32 32 H 1.08998 * 109.47027 * 269.99525 * 1 2 3 33 33 H 1.08993 * 109.46999 * 30.00007 * 1 2 3 34 34 H 1.09011 * 109.46712 * 150.00247 * 1 2 3 35 35 H 1.08005 * 125.64838 * 359.97328 * 3 2 1 36 36 H 1.08004 * 125.99416 * 180.24766 * 5 4 3 37 37 H 1.08994 * 110.62035 * 85.93297 * 9 7 6 38 38 H 1.09002 * 110.54316 * 322.92631 * 9 7 6 39 39 H 1.08999 * 111.07622 * 335.54679 * 15 13 11 40 40 H 1.08994 * 111.01534 * 211.67491 * 15 13 11 41 41 H 1.09002 * 110.48855 * 266.08223 * 16 15 13 42 42 H 1.08998 * 110.48570 * 143.57284 * 16 15 13 43 43 H 0.96998 * 124.35206 * 179.61446 * 19 17 16 44 44 H 1.09001 * 109.91076 * 94.14338 * 20 10 9 45 45 H 1.09001 * 109.91550 * 215.22353 * 20 10 9 46 46 H 0.97006 * 120.00041 * 93.54756 * 23 21 20 47 47 H 0.96996 * 119.99796 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5461 -0.6504 0.0046 6 6 2.2773 -1.1018 -0.0005 7 6 1.8365 -2.5428 -0.0003 8 1 0.8177 -2.6360 -0.3766 9 6 1.9505 -3.1524 1.4159 10 7 2.0873 -4.6041 1.1553 11 6 1.5297 -5.6108 1.8567 12 8 0.8338 -5.3664 2.8195 13 6 1.7710 -7.0402 1.4450 14 1 1.7566 -7.1267 0.3585 15 6 3.1259 -7.5396 2.0036 16 6 2.6896 -8.2039 3.3300 17 6 1.2421 -8.5795 3.1017 18 8 0.6125 -9.3630 3.7804 19 7 0.7550 -7.9179 2.0377 20 6 2.9532 -4.7223 -0.0328 21 6 2.8085 -3.4129 -0.8303 22 1 3.7751 -2.9183 -0.9250 23 7 2.2444 -3.6836 -2.1550 24 6 3.0691 -4.0260 -3.1933 25 1 4.1351 -4.0968 -3.0355 26 6 2.5346 -4.2820 -4.4486 27 7 3.3271 -4.6116 -5.4465 28 14 0.6908 -4.1588 -4.7217 29 1 0.3422 -2.7741 -5.1294 30 1 0.2842 -5.1066 -5.7902 31 1 -0.0198 -4.4979 -3.4626 32 1 -0.3633 -0.0001 1.0277 33 1 -0.3633 0.8899 -0.5138 34 1 -0.3633 -0.8901 -0.5139 35 1 1.9334 2.1144 -0.0004 36 1 4.4369 -1.2611 0.0092 37 1 1.0499 -2.9489 1.9950 38 1 2.8331 -2.7687 1.9276 39 1 3.8043 -6.7068 2.1890 40 1 3.5803 -8.2689 1.3330 41 1 2.7749 -7.4981 4.1563 42 1 3.2882 -9.0934 3.5261 43 1 -0.1515 -8.0087 1.7048 44 1 3.9901 -4.8565 0.2755 45 1 2.6347 -5.5685 -0.6416 46 1 1.2869 -3.6203 -2.2966 47 1 2.9537 -4.7901 -6.3237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070630372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:42 Heat of formation + Delta-G solvation = 27.667038 kcal Electronic energy + Delta-G solvation = -31395.800862 eV Core-core repulsion = 27194.613472 eV Total energy + Delta-G solvation = -4201.187391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.08970 -40.99170 -39.42431 -37.76117 -36.16051 -34.34433 -34.01485 -32.52244 -31.51431 -31.14814 -28.99743 -28.05688 -27.33449 -26.98745 -24.51231 -23.24281 -22.41444 -21.73654 -20.74713 -20.55877 -19.74333 -19.34552 -17.94111 -17.63216 -17.32180 -17.06155 -16.19996 -15.75782 -15.72714 -15.35667 -14.86589 -14.70686 -14.47152 -14.07091 -14.00319 -13.77232 -13.55476 -13.42231 -13.30666 -13.10289 -12.97212 -12.86106 -12.81450 -12.49935 -12.37864 -12.21332 -11.74291 -11.64550 -11.46969 -11.07460 -11.03780 -10.88867 -10.37917 -10.29520 -10.02994 -9.84514 -9.77945 -9.51476 -9.30867 -9.14452 -8.74343 -8.20792 -7.51400 -5.96050 -3.34846 2.06161 2.35668 2.46640 2.71901 2.85097 3.18854 3.22782 3.27380 3.29183 3.31117 4.10069 4.18581 4.28101 4.39936 4.51531 4.59496 4.60276 4.72728 4.77882 4.80344 4.90137 4.95349 5.08671 5.17012 5.18291 5.31904 5.36961 5.39342 5.41855 5.51645 5.55950 5.60430 5.64708 5.72774 5.79653 5.92991 6.01675 6.16973 6.38741 6.51803 6.55290 6.82192 6.84133 7.23126 7.46482 7.76042 7.99647 8.10688 8.16431 8.21765 8.96805 9.69353 9.85812 11.21348 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008124 B = 0.004081 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.693678 B = 6859.986996 C = 9068.805947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.459 5.459 3 C 0.174 3.826 4 N -0.492 5.492 5 C -0.014 4.014 6 C -0.001 4.001 7 C -0.038 4.038 8 H 0.085 0.915 9 C 0.120 3.880 10 N -0.612 5.612 11 C 0.520 3.480 12 O -0.540 6.540 13 C 0.114 3.886 14 H 0.119 0.881 15 C -0.117 4.117 16 C -0.157 4.157 17 C 0.529 3.471 18 O -0.536 6.536 19 N -0.708 5.708 20 C 0.068 3.932 21 C 0.186 3.814 22 H 0.086 0.914 23 N -0.737 5.737 24 C -0.254 4.254 25 H 0.095 0.905 26 C 0.014 3.986 27 N -0.925 5.925 28 Si 0.880 3.120 29 H -0.285 1.285 30 H -0.289 1.289 31 H -0.279 1.279 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.201 0.799 36 H 0.170 0.830 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.414 0.586 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.361 0.639 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 2.974 13.493 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.142 5.142 3 C -0.108 4.108 4 N -0.210 5.210 5 C -0.162 4.162 6 C -0.115 4.115 7 C -0.060 4.060 8 H 0.103 0.897 9 C -0.003 4.003 10 N -0.346 5.346 11 C 0.306 3.694 12 O -0.417 6.417 13 C 0.004 3.996 14 H 0.136 0.864 15 C -0.155 4.155 16 C -0.197 4.197 17 C 0.316 3.684 18 O -0.413 6.413 19 N -0.363 5.363 20 C -0.057 4.057 21 C 0.074 3.926 22 H 0.104 0.896 23 N -0.378 5.378 24 C -0.383 4.383 25 H 0.113 0.887 26 C -0.183 4.183 27 N -0.571 5.571 28 Si 0.710 3.290 29 H -0.211 1.211 30 H -0.216 1.216 31 H -0.205 1.205 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.218 0.782 36 H 0.187 0.813 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.253 0.747 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.195 0.805 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.603 3.068 14.268 14.825 hybrid contribution -2.603 -0.205 -0.835 2.741 sum -5.205 2.862 13.433 14.688 Atomic orbital electron populations 1.22029 0.77028 1.04793 1.03372 1.45237 1.07392 1.06795 1.54815 1.24838 0.85755 0.93218 1.06951 1.70262 1.19270 1.12099 1.19345 1.22008 0.95726 0.90855 1.07642 1.20765 0.91194 0.88521 1.11059 1.20881 1.01062 0.87948 0.96105 0.89694 1.22345 1.02666 0.79592 0.95697 1.48823 1.49573 1.05882 1.30337 1.20573 0.79533 0.86591 0.82672 1.90718 1.38815 1.84537 1.27604 1.21636 0.89981 0.87409 1.00541 0.86360 1.22627 0.94403 1.01988 0.96484 1.22361 0.94407 1.03486 0.99461 1.20810 0.89704 0.78957 0.78964 1.90747 1.65690 1.35786 1.49058 1.45895 1.15236 1.43026 1.32112 1.23526 0.93623 1.03105 0.85462 1.21129 0.96233 0.90477 0.84733 0.89621 1.42814 1.05628 1.83810 1.05567 1.19034 0.91912 1.39974 0.87394 0.88689 1.24651 0.96855 1.01029 0.95739 1.69682 1.33672 1.52473 1.01309 0.86652 0.87128 0.77776 0.77432 1.21113 1.21552 1.20513 0.90578 0.89443 0.89690 0.78194 0.81298 0.90233 0.90209 0.88520 0.88182 0.87566 0.87543 0.74727 0.91168 0.89236 0.80549 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.00 59.85 0.66 1.22 16 2 N -0.46 -5.41 3.15 -121.36 -0.38 -5.79 16 3 C 0.17 2.12 12.56 -90.38 -1.14 0.99 16 4 N -0.49 -7.49 11.25 -14.66 -0.16 -7.66 16 5 C -0.01 -0.21 10.87 -17.81 -0.19 -0.41 16 6 C 0.00 -0.01 5.93 -81.60 -0.48 -0.49 16 7 C -0.04 -0.50 3.05 -90.08 -0.27 -0.77 16 8 H 0.08 1.14 6.71 -51.93 -0.35 0.79 16 9 C 0.12 1.43 6.50 -2.31 -0.02 1.41 16 10 N -0.61 -7.44 3.29 -169.98 -0.56 -8.00 16 11 C 0.52 6.74 7.07 -10.99 -0.08 6.66 16 12 O -0.54 -8.85 16.79 5.55 0.09 -8.76 16 13 C 0.11 1.18 3.38 -67.97 -0.23 0.96 16 14 H 0.12 1.12 7.01 -51.93 -0.36 0.75 16 15 C -0.12 -0.93 6.72 -24.91 -0.17 -1.10 16 16 C -0.16 -1.46 6.84 -26.74 -0.18 -1.64 16 17 C 0.53 6.94 8.43 -10.86 -0.09 6.84 16 18 O -0.54 -9.11 18.03 5.55 0.10 -9.01 16 19 N -0.71 -8.23 5.47 -53.70 -0.29 -8.52 16 20 C 0.07 0.86 6.55 -2.98 -0.02 0.84 16 21 C 0.19 2.80 3.16 -66.56 -0.21 2.59 16 22 H 0.09 1.34 6.27 -51.93 -0.33 1.01 16 23 N -0.74 -14.47 4.88 -52.09 -0.25 -14.72 16 24 C -0.25 -6.19 10.45 -15.06 -0.16 -6.35 16 25 H 0.10 2.49 8.06 -52.49 -0.42 2.06 16 26 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 27 N -0.93 -26.80 13.97 55.49 0.78 -26.02 16 28 Si 0.88 20.17 27.74 -169.99 -4.71 15.46 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 31 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.72 7.14 -51.92 -0.37 0.35 16 35 H 0.20 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.17 2.26 7.21 -52.48 -0.38 1.88 16 37 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 38 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 39 H 0.10 0.69 7.90 -51.93 -0.41 0.28 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.41 4.50 8.96 -40.82 -0.37 4.13 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 1.21 6.77 -51.93 -0.35 0.86 16 46 H 0.36 7.20 5.40 -40.82 -0.22 6.98 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -35.67 385.86 -8.77 -44.45 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.51 Total: 11.74 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -2.68 Total: 11.02 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -0.88 Total: -70.71 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.19 Total: -17.76 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.71 Total: 15.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.67 -8.77 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070630372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.116 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds