Wall clock time and date at job start Wed Apr 1 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35040 * 126.39602 * 2 1 4 4 N 1.30496 * 108.70135 * 180.02562 * 3 2 1 5 5 C 1.34126 * 109.25628 * 359.75092 * 4 3 2 6 6 C 1.34675 * 108.02061 * 0.40089 * 5 4 3 7 7 C 1.50689 * 126.59360 * 179.86939 * 6 5 4 8 8 H 1.09000 * 110.80412 * 201.40270 * 7 6 5 9 9 C 1.54600 * 110.83282 * 78.25320 * 7 6 5 10 10 N 1.48117 * 103.42383 * 204.44915 * 9 7 6 11 11 C 1.34779 * 127.03393 * 219.29001 * 10 9 7 12 12 O 1.21285 * 120.00058 * 359.69967 * 11 10 9 13 13 C 1.50697 * 120.00242 * 179.70922 * 11 10 9 14 14 H 1.09001 * 110.21589 * 320.46685 * 13 11 10 15 15 C 1.54831 * 110.33243 * 82.41779 * 13 11 10 16 16 C 1.54631 * 101.60220 * 93.62136 * 15 13 11 17 17 C 1.51281 * 104.31067 * 24.82962 * 16 15 13 18 18 O 1.21284 * 124.93855 * 163.71942 * 17 16 15 19 19 N 1.34418 * 110.11952 * 343.67722 * 17 16 15 20 20 C 1.47486 * 105.93397 * 39.01843 * 10 9 7 21 21 C 1.54003 * 107.08547 * 334.78489 * 20 10 9 22 22 H 1.08995 * 110.33056 * 120.30058 * 21 20 10 23 23 N 1.46500 * 110.32394 * 242.41133 * 21 20 10 24 24 C 1.36938 * 119.99728 * 273.54286 * 23 21 20 25 25 H 1.07996 * 120.00347 * 0.02562 * 24 23 21 26 26 C 1.38819 * 119.99400 * 180.02562 * 24 23 21 27 27 N 1.31624 * 119.99634 * 180.02562 * 26 24 23 28 28 Si 1.86795 * 120.00550 * 0.02562 * 26 24 23 29 29 H 1.48500 * 109.47301 * 89.99668 * 28 26 24 30 30 H 1.48498 * 109.47268 * 209.99984 * 28 26 24 31 31 H 1.48508 * 109.46940 * 329.99733 * 28 26 24 32 32 H 1.08998 * 109.47027 * 269.99525 * 1 2 3 33 33 H 1.08993 * 109.46999 * 30.00007 * 1 2 3 34 34 H 1.09011 * 109.46712 * 150.00247 * 1 2 3 35 35 H 1.08005 * 125.64838 * 359.97328 * 3 2 1 36 36 H 1.08004 * 125.99416 * 180.24766 * 5 4 3 37 37 H 1.08994 * 110.62035 * 85.93297 * 9 7 6 38 38 H 1.09002 * 110.54316 * 322.92631 * 9 7 6 39 39 H 1.08999 * 111.07622 * 335.54679 * 15 13 11 40 40 H 1.08994 * 111.01534 * 211.67491 * 15 13 11 41 41 H 1.09002 * 110.48855 * 266.08223 * 16 15 13 42 42 H 1.08998 * 110.48570 * 143.57284 * 16 15 13 43 43 H 0.96998 * 124.35206 * 179.61446 * 19 17 16 44 44 H 1.09001 * 109.91076 * 94.14338 * 20 10 9 45 45 H 1.09001 * 109.91550 * 215.22353 * 20 10 9 46 46 H 0.97006 * 120.00041 * 93.54756 * 23 21 20 47 47 H 0.96996 * 119.99796 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5461 -0.6504 0.0046 6 6 2.2773 -1.1018 -0.0005 7 6 1.8365 -2.5428 -0.0003 8 1 0.8177 -2.6360 -0.3766 9 6 1.9505 -3.1524 1.4159 10 7 2.0873 -4.6041 1.1553 11 6 1.5297 -5.6108 1.8567 12 8 0.8338 -5.3664 2.8195 13 6 1.7710 -7.0402 1.4450 14 1 1.7566 -7.1267 0.3585 15 6 3.1259 -7.5396 2.0036 16 6 2.6896 -8.2039 3.3300 17 6 1.2421 -8.5795 3.1017 18 8 0.6125 -9.3630 3.7804 19 7 0.7550 -7.9179 2.0377 20 6 2.9532 -4.7223 -0.0328 21 6 2.8085 -3.4129 -0.8303 22 1 3.7751 -2.9183 -0.9250 23 7 2.2444 -3.6836 -2.1550 24 6 3.0691 -4.0260 -3.1933 25 1 4.1351 -4.0968 -3.0355 26 6 2.5346 -4.2820 -4.4486 27 7 3.3271 -4.6116 -5.4465 28 14 0.6908 -4.1588 -4.7217 29 1 0.3422 -2.7741 -5.1294 30 1 0.2842 -5.1066 -5.7902 31 1 -0.0198 -4.4979 -3.4626 32 1 -0.3633 -0.0001 1.0277 33 1 -0.3633 0.8899 -0.5138 34 1 -0.3633 -0.8901 -0.5139 35 1 1.9334 2.1144 -0.0004 36 1 4.4369 -1.2611 0.0092 37 1 1.0499 -2.9489 1.9950 38 1 2.8331 -2.7687 1.9276 39 1 3.8043 -6.7068 2.1890 40 1 3.5803 -8.2689 1.3330 41 1 2.7749 -7.4981 4.1563 42 1 3.2882 -9.0934 3.5261 43 1 -0.1515 -8.0087 1.7048 44 1 3.9901 -4.8565 0.2755 45 1 2.6347 -5.5685 -0.6416 46 1 1.2869 -3.6203 -2.2966 47 1 2.9537 -4.7901 -6.3237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070630372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:41 Heat of formation + Delta-G solvation = 1.705854 kcal Electronic energy + Delta-G solvation = -31396.926624 eV Core-core repulsion = 27194.613472 eV Total energy + Delta-G solvation = -4202.313152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.06205 -41.94556 -40.48322 -38.92215 -37.19367 -35.91582 -34.90415 -33.82477 -32.77248 -32.29194 -29.95680 -29.36036 -28.27527 -27.76272 -25.82664 -24.57679 -23.28455 -22.84520 -21.68648 -21.65480 -20.87425 -20.35504 -19.48525 -18.66683 -18.35630 -18.08291 -17.23515 -16.86212 -16.62516 -16.40980 -16.26835 -15.80900 -15.65977 -15.27087 -15.04156 -14.75851 -14.71844 -14.53255 -14.36714 -14.23213 -13.99812 -13.76032 -13.70273 -13.60992 -13.49692 -13.21046 -12.98206 -12.66114 -12.55096 -12.47261 -12.26892 -12.22423 -11.80577 -11.74896 -11.42196 -11.07233 -11.02786 -10.87095 -10.44924 -10.18664 -9.85016 -9.39370 -9.10901 -7.97148 -5.31133 1.09179 1.35949 1.37108 1.40131 1.47329 1.48155 1.78690 1.98443 2.25905 2.37195 2.50463 3.25309 3.30693 3.33740 3.41286 3.47582 3.66242 3.75179 3.87682 3.91778 3.96816 3.99856 4.15302 4.19724 4.35005 4.41495 4.41977 4.49366 4.59187 4.62450 4.67429 4.75739 4.77712 4.90031 4.94174 4.95910 5.03618 5.09903 5.30447 5.47567 5.63941 5.82314 5.84557 5.88858 6.25609 6.35807 6.44463 6.98385 7.10736 7.13012 7.17994 7.84889 8.01441 9.23618 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008124 B = 0.004081 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.693678 B = 6859.986996 C = 9068.805947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.460 5.460 3 C 0.180 3.820 4 N -0.534 5.534 5 C -0.037 4.037 6 C -0.010 4.010 7 C -0.024 4.024 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.606 5.606 11 C 0.521 3.479 12 O -0.576 6.576 13 C 0.113 3.887 14 H 0.134 0.866 15 C -0.108 4.108 16 C -0.151 4.151 17 C 0.518 3.482 18 O -0.585 6.585 19 N -0.707 5.707 20 C 0.079 3.921 21 C 0.179 3.821 22 H 0.080 0.920 23 N -0.739 5.739 24 C -0.218 4.218 25 H 0.072 0.928 26 C -0.054 4.054 27 N -0.979 5.979 28 Si 0.939 3.061 29 H -0.290 1.290 30 H -0.303 1.303 31 H -0.249 1.249 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.238 0.762 36 H 0.170 0.830 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.414 0.586 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 3.671 14.722 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.142 5.142 3 C -0.102 4.102 4 N -0.252 5.252 5 C -0.184 4.184 6 C -0.125 4.125 7 C -0.045 4.045 8 H 0.102 0.898 9 C 0.003 3.997 10 N -0.339 5.339 11 C 0.309 3.691 12 O -0.456 6.456 13 C 0.004 3.996 14 H 0.151 0.849 15 C -0.146 4.146 16 C -0.191 4.191 17 C 0.306 3.694 18 O -0.465 6.465 19 N -0.360 5.360 20 C -0.046 4.046 21 C 0.069 3.931 22 H 0.098 0.902 23 N -0.381 5.381 24 C -0.349 4.349 25 H 0.089 0.911 26 C -0.246 4.246 27 N -0.630 5.630 28 Si 0.768 3.232 29 H -0.217 1.217 30 H -0.230 1.230 31 H -0.174 1.174 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.187 0.813 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.252 0.748 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.196 0.804 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.279 3.798 15.548 16.338 hybrid contribution -2.359 -0.290 -1.140 2.636 sum -5.638 3.508 14.408 15.865 Atomic orbital electron populations 1.22327 0.74734 1.05811 1.04935 1.45469 1.08804 1.06092 1.53842 1.25565 0.85096 0.94698 1.04879 1.70225 1.21281 1.12477 1.21230 1.22167 0.96453 0.91138 1.08651 1.20768 0.91244 0.89109 1.11415 1.20684 1.00138 0.87538 0.96145 0.89798 1.22320 1.03119 0.79337 0.94908 1.48785 1.49226 1.05992 1.29902 1.20992 0.78636 0.87480 0.81999 1.90712 1.40446 1.85143 1.29290 1.21832 0.90925 0.85566 1.01295 0.84864 1.22751 0.93121 1.02869 0.95844 1.22400 0.91931 1.04496 1.00282 1.21513 0.91184 0.78183 0.78502 1.90714 1.67180 1.37973 1.50657 1.46014 1.15651 1.42553 1.31735 1.23272 0.95120 1.00979 0.85205 1.21317 0.96370 0.92159 0.83288 0.90201 1.42781 1.05195 1.83844 1.06322 1.19008 0.91403 1.36353 0.88162 0.91056 1.25307 1.00836 1.02621 0.95868 1.69850 1.35576 1.55849 1.01721 0.85658 0.82650 0.76885 0.77961 1.21659 1.23021 1.17384 0.88746 0.87008 0.90160 0.74595 0.81323 0.90403 0.89162 0.87103 0.85711 0.87535 0.85448 0.74761 0.88509 0.89590 0.80425 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 11.00 127.77 1.41 2.22 16 2 N -0.46 -9.73 3.15 -537.87 -1.70 -11.43 16 3 C 0.18 3.98 12.56 180.26 2.26 6.24 16 4 N -0.53 -15.71 11.25 -200.31 -2.25 -17.96 16 5 C -0.04 -1.04 10.87 83.53 0.91 -0.13 16 6 C -0.01 -0.24 5.93 40.95 0.24 0.00 16 7 C -0.02 -0.56 3.05 -10.45 -0.03 -0.59 16 8 H 0.08 2.05 6.71 -2.39 -0.02 2.03 16 9 C 0.13 2.70 6.50 86.61 0.56 3.26 16 10 N -0.61 -13.09 3.29 -810.07 -2.67 -15.75 16 11 C 0.52 12.29 7.07 87.66 0.62 12.91 16 12 O -0.58 -18.02 16.79 -3.04 -0.05 -18.07 16 13 C 0.11 2.05 3.38 44.82 0.15 2.20 16 14 H 0.13 2.08 7.01 -2.39 -0.02 2.06 16 15 C -0.11 -1.34 6.72 31.77 0.21 -1.13 16 16 C -0.15 -2.45 6.84 30.59 0.21 -2.24 16 17 C 0.52 13.08 8.43 87.90 0.74 13.82 16 18 O -0.58 -19.98 18.03 -3.04 -0.05 -20.04 16 19 N -0.71 -15.47 5.47 -442.39 -2.42 -17.89 16 20 C 0.08 1.75 6.55 86.53 0.57 2.32 16 21 C 0.18 5.02 3.16 45.88 0.15 5.16 16 22 H 0.08 2.39 6.27 -2.39 -0.01 2.38 16 23 N -0.74 -27.75 4.88 -318.73 -1.56 -29.30 16 24 C -0.22 -10.56 10.45 84.03 0.88 -9.68 16 25 H 0.07 3.76 8.06 -2.91 -0.02 3.73 16 26 C -0.05 -2.88 5.50 84.86 0.47 -2.42 16 27 N -0.98 -58.04 13.97 21.65 0.30 -57.74 16 28 Si 0.94 41.34 27.74 68.60 1.90 43.25 16 29 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 30 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 31 H -0.25 -9.58 6.52 99.48 0.65 -8.93 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.14 7.14 -2.38 -0.02 1.12 16 35 H 0.24 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.17 4.49 7.21 -2.91 -0.02 4.47 16 37 H 0.08 1.75 7.85 -2.39 -0.02 1.73 16 38 H 0.09 1.78 8.04 -2.39 -0.02 1.76 16 39 H 0.11 1.12 7.90 -2.39 -0.02 1.11 16 40 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.41 8.69 8.96 -92.71 -0.83 7.86 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 2.05 6.77 -2.39 -0.02 2.03 16 46 H 0.36 13.54 5.40 -92.70 -0.50 13.04 16 47 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -79.82 385.86 0.49 -79.33 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.36 Total: 33.66 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 9.35 Total: 31.95 kcal Atomic # 7 Polarization: -139.79 SS G_CDS: -10.29 Total: -150.08 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.11 Total: -38.11 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.90 Total: 43.25 kcal Total: -79.82 0.49 -79.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070630372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.036 kcal (2) G-P(sol) polarization free energy of solvation -79.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds