Wall clock time and date at job start Wed Apr 1 2020 05:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35043 * 126.40067 * 2 1 4 4 N 1.30497 * 108.70026 * 180.02562 * 3 2 1 5 5 C 1.34126 * 109.25827 * 359.74605 * 4 3 2 6 6 C 1.34668 * 108.01956 * 0.40413 * 5 4 3 7 7 C 1.50701 * 126.59292 * 179.87204 * 6 5 4 8 8 H 1.08999 * 110.65729 * 201.49174 * 7 6 5 9 9 C 1.54598 * 110.98911 * 78.34102 * 7 6 5 10 10 N 1.48112 * 103.42417 * 204.37712 * 9 7 6 11 11 C 1.34775 * 127.03275 * 219.28364 * 10 9 7 12 12 O 1.21286 * 120.00066 * 359.70990 * 11 10 9 13 13 C 1.50701 * 120.00059 * 179.70326 * 11 10 9 14 14 H 1.09001 * 110.54000 * 298.84229 * 13 11 10 15 15 C 1.54784 * 110.61673 * 176.21507 * 13 11 10 16 16 C 1.54480 * 101.69261 * 266.40316 * 15 13 11 17 17 N 1.46764 * 105.47241 * 334.38904 * 16 15 13 18 18 C 1.34420 * 111.30051 * 17.01779 * 17 16 15 19 19 O 1.21283 * 124.93917 * 179.55324 * 18 17 16 20 20 C 1.47486 * 105.93284 * 39.01690 * 10 9 7 21 21 C 1.53996 * 107.08497 * 334.78311 * 20 10 9 22 22 H 1.09004 * 110.32712 * 120.19936 * 21 20 10 23 23 N 1.46499 * 110.32865 * 242.41122 * 21 20 10 24 24 C 1.36938 * 119.99941 * 273.55066 * 23 21 20 25 25 H 1.07997 * 120.00431 * 359.97438 * 24 23 21 26 26 C 1.38816 * 119.99905 * 179.97438 * 24 23 21 27 27 N 1.31618 * 119.99705 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 120.00123 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46830 * 89.99878 * 28 26 24 30 30 H 1.48488 * 109.47170 * 210.00258 * 28 26 24 31 31 H 1.48502 * 109.47116 * 330.00462 * 28 26 24 32 32 H 1.09003 * 109.47126 * 270.01028 * 1 2 3 33 33 H 1.09004 * 109.46790 * 30.00265 * 1 2 3 34 34 H 1.08999 * 109.47477 * 150.00910 * 1 2 3 35 35 H 1.08000 * 125.64955 * 0.02562 * 3 2 1 36 36 H 1.07997 * 125.99381 * 180.24581 * 5 4 3 37 37 H 1.08992 * 110.62198 * 85.85362 * 9 7 6 38 38 H 1.09004 * 110.54236 * 322.85376 * 9 7 6 39 39 H 1.08997 * 111.17051 * 148.23263 * 15 13 11 40 40 H 1.09008 * 110.86851 * 24.43704 * 15 13 11 41 41 H 1.09003 * 110.24569 * 215.39240 * 16 15 13 42 42 H 1.09001 * 110.24711 * 93.39200 * 16 15 13 43 43 H 0.96999 * 124.34802 * 197.03621 * 17 16 15 44 44 H 1.08999 * 109.90974 * 94.14500 * 20 10 9 45 45 H 1.09005 * 109.91046 * 215.22679 * 20 10 9 46 46 H 0.96996 * 120.00161 * 93.54425 * 23 21 20 47 47 H 0.97004 * 119.99472 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5095 0.6902 -0.0006 5 6 3.5460 -0.6506 0.0047 6 6 2.2772 -1.1018 -0.0004 7 6 1.8362 -2.5429 0.0000 8 1 0.8180 -2.6335 -0.3782 9 6 1.9466 -3.1554 1.4151 10 7 2.0814 -4.6067 1.1521 11 6 1.5208 -5.6138 1.8507 12 8 0.8235 -5.3699 2.8127 13 6 1.7602 -7.0428 1.4365 14 1 1.3832 -7.2173 0.4288 15 6 1.0969 -8.0190 2.4380 16 6 2.2634 -8.3142 3.4068 17 7 3.4863 -8.0909 2.6266 18 6 3.2334 -7.3773 1.5159 19 8 4.0661 -7.0455 0.6989 20 6 2.9492 -4.7243 -0.0346 21 6 2.8081 -3.4131 -0.8299 22 1 3.7756 -2.9191 -0.9204 23 7 2.2460 -3.6803 -2.1561 24 6 3.0718 -4.0222 -3.1936 25 1 4.1375 -4.0945 -3.0343 26 6 2.5391 -4.2759 -4.4501 27 7 1.2403 -4.1872 -4.6444 28 14 3.6656 -4.7416 -5.8656 29 1 3.8231 -6.2177 -5.9078 30 1 3.0752 -4.2700 -7.1439 31 1 4.9941 -4.1075 -5.6702 32 1 -0.3633 0.0002 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3634 -0.8900 -0.5137 35 1 1.9335 2.1144 0.0004 36 1 4.4367 -1.2613 0.0093 37 1 1.0454 -2.9513 1.9931 38 1 2.8290 -2.7742 1.9292 39 1 0.7644 -8.9292 1.9390 40 1 0.2693 -7.5376 2.9592 41 1 2.2175 -9.3483 3.7484 42 1 2.2290 -7.6334 4.2573 43 1 4.3642 -8.4167 2.8798 44 1 3.9852 -4.8609 0.2752 45 1 2.6302 -5.5687 -0.6457 46 1 1.2889 -3.6150 -2.2994 47 1 0.8681 -4.3648 -5.5224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070675485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:55 Heat of formation + Delta-G solvation = 25.967375 kcal Electronic energy + Delta-G solvation = -31791.702077 eV Core-core repulsion = 27590.440984 eV Total energy + Delta-G solvation = -4201.261094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.91286 -40.97925 -39.06302 -37.61130 -36.22013 -34.03807 -33.83836 -32.41337 -31.46915 -30.60281 -28.50856 -27.41802 -27.28575 -26.81968 -24.35286 -23.28847 -22.02256 -21.60835 -21.24713 -20.39310 -19.36776 -18.75959 -17.64575 -17.48203 -17.21230 -16.71419 -15.95312 -15.76827 -15.56498 -15.25157 -14.70940 -14.44779 -14.27852 -13.86787 -13.80505 -13.49666 -13.45375 -13.32581 -13.12025 -13.06555 -12.80366 -12.78392 -12.64081 -12.24282 -11.96185 -11.77099 -11.63805 -11.48825 -11.14119 -10.84095 -10.78902 -10.50990 -10.11776 -10.02677 -9.76015 -9.71787 -9.67804 -9.34058 -9.24858 -9.04301 -8.47942 -8.02266 -7.03484 -5.81753 -3.11430 2.24639 2.32942 2.66631 2.93345 3.12166 3.27772 3.43942 3.44176 3.49656 3.51298 4.19246 4.26587 4.51893 4.55175 4.76830 4.78473 4.81876 4.89808 4.93062 5.06353 5.08723 5.14808 5.28192 5.37263 5.42549 5.48459 5.56757 5.57138 5.68507 5.71744 5.79840 5.83296 5.90404 5.96606 6.12766 6.30132 6.39597 6.58635 6.61618 6.62722 6.84319 6.85468 7.01940 7.40522 7.68098 7.72607 8.12365 8.17795 8.31706 8.35369 9.47891 9.99213 10.34225 11.40494 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007172 B = 0.004783 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3902.915191 B = 5853.056856 C = 8620.924116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.458 5.458 3 C 0.170 3.830 4 N -0.494 5.494 5 C -0.020 4.020 6 C 0.007 3.993 7 C -0.037 4.037 8 H 0.088 0.912 9 C 0.120 3.880 10 N -0.606 5.606 11 C 0.551 3.449 12 O -0.549 6.549 13 C -0.147 4.147 14 H 0.135 0.865 15 C -0.120 4.120 16 C 0.101 3.899 17 N -0.732 5.732 18 C 0.528 3.472 19 O -0.504 6.504 20 C 0.078 3.922 21 C 0.179 3.821 22 H 0.075 0.925 23 N -0.711 5.711 24 C -0.240 4.240 25 H 0.074 0.926 26 C -0.009 4.009 27 N -0.933 5.933 28 Si 0.906 3.094 29 H -0.289 1.289 30 H -0.292 1.292 31 H -0.280 1.280 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.201 0.799 36 H 0.168 0.832 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.412 0.588 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -1.959 17.081 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.141 5.141 3 C -0.111 4.111 4 N -0.212 5.212 5 C -0.168 4.168 6 C -0.108 4.108 7 C -0.058 4.058 8 H 0.106 0.894 9 C -0.003 4.003 10 N -0.338 5.338 11 C 0.338 3.662 12 O -0.428 6.428 13 C -0.172 4.172 14 H 0.153 0.847 15 C -0.158 4.158 16 C -0.023 4.023 17 N -0.389 5.389 18 C 0.312 3.688 19 O -0.377 6.377 20 C -0.048 4.048 21 C 0.067 3.933 22 H 0.093 0.907 23 N -0.351 5.351 24 C -0.371 4.371 25 H 0.092 0.908 26 C -0.205 4.205 27 N -0.581 5.581 28 Si 0.737 3.263 29 H -0.216 1.216 30 H -0.219 1.219 31 H -0.206 1.206 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.217 0.783 36 H 0.185 0.815 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.250 0.750 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.560 -1.173 16.989 17.220 hybrid contribution -0.221 -0.954 -0.956 1.369 sum -2.781 -2.127 16.033 16.411 Atomic orbital electron populations 1.22028 0.76962 1.04973 1.03204 1.45221 1.07433 1.06740 1.54702 1.24790 0.85799 0.93201 1.07332 1.70234 1.19352 1.12119 1.19481 1.21975 0.95819 0.90802 1.08168 1.20817 0.91085 0.88658 1.10199 1.20881 1.01475 0.87655 0.95799 0.89353 1.22339 1.02328 0.79628 0.95983 1.48778 1.48683 1.05783 1.30531 1.19268 0.79360 0.85273 0.82303 1.90659 1.39795 1.84280 1.28034 1.22098 0.96113 0.94408 1.04548 0.84690 1.22631 0.98460 0.98680 0.96002 1.22099 0.83586 1.01889 0.94751 1.46159 1.11486 1.56859 1.24424 1.20307 0.89786 0.77575 0.81179 1.90842 1.51816 1.53049 1.42008 1.23660 0.93627 1.02524 0.84954 1.21220 0.95658 0.90591 0.85870 0.90735 1.42413 1.07067 1.82153 1.03487 1.19250 0.90628 1.38810 0.88375 0.90807 1.24715 0.95812 1.02278 0.97665 1.69657 1.09988 1.55832 1.22643 0.86199 0.79839 0.78205 0.82051 1.21628 1.21864 1.20564 0.90736 0.89554 0.89361 0.78289 0.81512 0.90226 0.90593 0.89218 0.87338 0.90050 0.90734 0.74969 0.91019 0.89157 0.78227 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 11.00 59.85 0.66 1.35 16 2 N -0.46 -6.28 3.15 -121.36 -0.38 -6.66 16 3 C 0.17 2.37 12.56 -90.38 -1.14 1.23 16 4 N -0.49 -8.41 11.25 -14.67 -0.17 -8.58 16 5 C -0.02 -0.34 10.87 -17.81 -0.19 -0.53 16 6 C 0.01 0.12 5.95 -81.60 -0.49 -0.37 16 7 C -0.04 -0.58 3.04 -90.08 -0.27 -0.86 16 8 H 0.09 1.46 6.70 -51.93 -0.35 1.11 16 9 C 0.12 1.78 6.51 -2.32 -0.02 1.76 16 10 N -0.61 -9.70 3.29 -169.99 -0.56 -10.26 16 11 C 0.55 8.53 7.28 -10.99 -0.08 8.45 16 12 O -0.55 -9.23 15.68 5.55 0.09 -9.14 16 13 C -0.15 -1.92 2.65 -91.70 -0.24 -2.16 16 14 H 0.14 1.78 7.99 -51.93 -0.41 1.37 16 15 C -0.12 -1.11 6.54 -25.01 -0.16 -1.27 16 16 C 0.10 0.80 7.78 -3.12 -0.02 0.78 16 17 N -0.73 -7.38 6.24 -59.20 -0.37 -7.75 16 18 C 0.53 7.35 7.44 -10.86 -0.08 7.27 16 19 O -0.50 -8.91 14.73 5.55 0.08 -8.83 16 20 C 0.08 1.39 4.91 -2.98 -0.01 1.37 16 21 C 0.18 3.39 3.16 -66.56 -0.21 3.18 16 22 H 0.07 1.45 6.26 -51.93 -0.33 1.13 16 23 N -0.71 -16.82 5.08 -52.10 -0.26 -17.09 16 24 C -0.24 -6.43 9.97 -15.06 -0.15 -6.58 16 25 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 26 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 27 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 28 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 31 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.94 7.13 -51.93 -0.37 0.57 16 35 H 0.20 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.17 2.68 7.20 -52.49 -0.38 2.30 16 37 H 0.08 1.14 7.85 -51.93 -0.41 0.73 16 38 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 1.06 6.93 -51.92 -0.36 0.70 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.41 3.38 8.96 -40.82 -0.37 3.02 16 44 H 0.07 1.32 6.89 -51.93 -0.36 0.96 16 45 H 0.09 1.83 6.98 -51.93 -0.36 1.47 16 46 H 0.38 9.67 7.54 -40.82 -0.31 9.37 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -35.21 381.90 -9.12 -44.34 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -6.50 Total: 14.23 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -2.51 Total: 13.30 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.02 Total: -76.94 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.17 Total: -17.97 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.21 -9.12 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070675485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.303 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds