Wall clock time and date at job start Wed Apr 1 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35043 * 126.40067 * 2 1 4 4 N 1.30497 * 108.70026 * 180.02562 * 3 2 1 5 5 C 1.34126 * 109.25827 * 359.74605 * 4 3 2 6 6 C 1.34668 * 108.01956 * 0.40413 * 5 4 3 7 7 C 1.50701 * 126.59292 * 179.87204 * 6 5 4 8 8 H 1.08999 * 110.65729 * 201.49174 * 7 6 5 9 9 C 1.54598 * 110.98911 * 78.34102 * 7 6 5 10 10 N 1.48112 * 103.42417 * 204.37712 * 9 7 6 11 11 C 1.34775 * 127.03275 * 219.28364 * 10 9 7 12 12 O 1.21286 * 120.00066 * 359.70990 * 11 10 9 13 13 C 1.50701 * 120.00059 * 179.70326 * 11 10 9 14 14 H 1.09001 * 110.54000 * 298.84229 * 13 11 10 15 15 C 1.54784 * 110.61673 * 176.21507 * 13 11 10 16 16 C 1.54480 * 101.69261 * 266.40316 * 15 13 11 17 17 N 1.46764 * 105.47241 * 334.38904 * 16 15 13 18 18 C 1.34420 * 111.30051 * 17.01779 * 17 16 15 19 19 O 1.21283 * 124.93917 * 179.55324 * 18 17 16 20 20 C 1.47486 * 105.93284 * 39.01690 * 10 9 7 21 21 C 1.53996 * 107.08497 * 334.78311 * 20 10 9 22 22 H 1.09004 * 110.32712 * 120.19936 * 21 20 10 23 23 N 1.46499 * 110.32865 * 242.41122 * 21 20 10 24 24 C 1.36938 * 119.99941 * 273.55066 * 23 21 20 25 25 H 1.07997 * 120.00431 * 359.97438 * 24 23 21 26 26 C 1.38816 * 119.99905 * 179.97438 * 24 23 21 27 27 N 1.31618 * 119.99705 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 120.00123 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46830 * 89.99878 * 28 26 24 30 30 H 1.48488 * 109.47170 * 210.00258 * 28 26 24 31 31 H 1.48502 * 109.47116 * 330.00462 * 28 26 24 32 32 H 1.09003 * 109.47126 * 270.01028 * 1 2 3 33 33 H 1.09004 * 109.46790 * 30.00265 * 1 2 3 34 34 H 1.08999 * 109.47477 * 150.00910 * 1 2 3 35 35 H 1.08000 * 125.64955 * 0.02562 * 3 2 1 36 36 H 1.07997 * 125.99381 * 180.24581 * 5 4 3 37 37 H 1.08992 * 110.62198 * 85.85362 * 9 7 6 38 38 H 1.09004 * 110.54236 * 322.85376 * 9 7 6 39 39 H 1.08997 * 111.17051 * 148.23263 * 15 13 11 40 40 H 1.09008 * 110.86851 * 24.43704 * 15 13 11 41 41 H 1.09003 * 110.24569 * 215.39240 * 16 15 13 42 42 H 1.09001 * 110.24711 * 93.39200 * 16 15 13 43 43 H 0.96999 * 124.34802 * 197.03621 * 17 16 15 44 44 H 1.08999 * 109.90974 * 94.14500 * 20 10 9 45 45 H 1.09005 * 109.91046 * 215.22679 * 20 10 9 46 46 H 0.96996 * 120.00161 * 93.54425 * 23 21 20 47 47 H 0.97004 * 119.99472 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5095 0.6902 -0.0006 5 6 3.5460 -0.6506 0.0047 6 6 2.2772 -1.1018 -0.0004 7 6 1.8362 -2.5429 0.0000 8 1 0.8180 -2.6335 -0.3782 9 6 1.9466 -3.1554 1.4151 10 7 2.0814 -4.6067 1.1521 11 6 1.5208 -5.6138 1.8507 12 8 0.8235 -5.3699 2.8127 13 6 1.7602 -7.0428 1.4365 14 1 1.3832 -7.2173 0.4288 15 6 1.0969 -8.0190 2.4380 16 6 2.2634 -8.3142 3.4068 17 7 3.4863 -8.0909 2.6266 18 6 3.2334 -7.3773 1.5159 19 8 4.0661 -7.0455 0.6989 20 6 2.9492 -4.7243 -0.0346 21 6 2.8081 -3.4131 -0.8299 22 1 3.7756 -2.9191 -0.9204 23 7 2.2460 -3.6803 -2.1561 24 6 3.0718 -4.0222 -3.1936 25 1 4.1375 -4.0945 -3.0343 26 6 2.5391 -4.2759 -4.4501 27 7 1.2403 -4.1872 -4.6444 28 14 3.6656 -4.7416 -5.8656 29 1 3.8231 -6.2177 -5.9078 30 1 3.0752 -4.2700 -7.1439 31 1 4.9941 -4.1075 -5.6702 32 1 -0.3633 0.0002 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3634 -0.8900 -0.5137 35 1 1.9335 2.1144 0.0004 36 1 4.4367 -1.2613 0.0093 37 1 1.0454 -2.9513 1.9931 38 1 2.8290 -2.7742 1.9292 39 1 0.7644 -8.9292 1.9390 40 1 0.2693 -7.5376 2.9592 41 1 2.2175 -9.3483 3.7484 42 1 2.2290 -7.6334 4.2573 43 1 4.3642 -8.4167 2.8798 44 1 3.9852 -4.8609 0.2752 45 1 2.6302 -5.5687 -0.6457 46 1 1.2889 -3.6150 -2.2994 47 1 0.8681 -4.3648 -5.5224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070675485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:54 Heat of formation + Delta-G solvation = 0.451477 kcal Electronic energy + Delta-G solvation = -31792.808530 eV Core-core repulsion = 27590.440984 eV Total energy + Delta-G solvation = -4202.367546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.07591 -42.07244 -40.30389 -38.96557 -37.29170 -35.85177 -34.90283 -33.82779 -32.69028 -32.17384 -29.58655 -29.01040 -28.37169 -27.75565 -26.02838 -24.78512 -22.93300 -22.91753 -22.30587 -21.69471 -20.69877 -19.95746 -19.18715 -18.66861 -18.44550 -18.05660 -17.15260 -17.05958 -16.72159 -16.49230 -16.17924 -15.54565 -15.50253 -15.34469 -15.12414 -14.90699 -14.70977 -14.52299 -14.38875 -14.29129 -13.77574 -13.75168 -13.68964 -13.49005 -13.40983 -13.17004 -12.89870 -12.65605 -12.65255 -12.40103 -12.24778 -12.17458 -11.88005 -11.76293 -11.31660 -10.98974 -10.92539 -10.90195 -10.44345 -10.13038 -9.86189 -9.30704 -8.97186 -7.95405 -5.23607 1.08458 1.17992 1.46788 1.47663 1.48249 1.56182 1.83482 2.01088 2.23064 2.37457 2.55572 3.25114 3.29556 3.34149 3.43902 3.53744 3.70640 3.75989 3.90674 3.99215 4.00537 4.06094 4.17511 4.21150 4.32475 4.44125 4.48662 4.50235 4.55995 4.60331 4.68124 4.74643 4.75773 4.92473 4.94623 5.01366 5.10350 5.11768 5.28997 5.45629 5.54644 5.74433 5.78258 5.94216 6.25279 6.36758 6.38366 6.90442 7.15076 7.15282 7.33845 8.02095 8.27707 9.27351 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007172 B = 0.004783 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3902.915191 B = 5853.056856 C = 8620.924116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.458 5.458 3 C 0.183 3.817 4 N -0.532 5.532 5 C -0.041 4.041 6 C -0.005 4.005 7 C -0.018 4.018 8 H 0.083 0.917 9 C 0.127 3.873 10 N -0.610 5.610 11 C 0.549 3.451 12 O -0.559 6.559 13 C -0.152 4.152 14 H 0.128 0.872 15 C -0.112 4.112 16 C 0.101 3.899 17 N -0.716 5.716 18 C 0.520 3.480 19 O -0.552 6.552 20 C 0.102 3.898 21 C 0.175 3.825 22 H 0.068 0.932 23 N -0.718 5.718 24 C -0.236 4.236 25 H 0.073 0.927 26 C -0.065 4.065 27 N -0.965 5.965 28 Si 0.962 3.038 29 H -0.288 1.288 30 H -0.295 1.295 31 H -0.273 1.273 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.243 0.757 36 H 0.162 0.838 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.422 0.578 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.374 0.626 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 -2.047 18.891 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.140 5.140 3 C -0.100 4.100 4 N -0.251 5.251 5 C -0.188 4.188 6 C -0.121 4.121 7 C -0.039 4.039 8 H 0.101 0.899 9 C 0.004 3.996 10 N -0.342 5.342 11 C 0.337 3.663 12 O -0.438 6.438 13 C -0.177 4.177 14 H 0.145 0.855 15 C -0.150 4.150 16 C -0.023 4.023 17 N -0.372 5.372 18 C 0.304 3.696 19 O -0.430 6.430 20 C -0.024 4.024 21 C 0.065 3.935 22 H 0.086 0.914 23 N -0.357 5.357 24 C -0.367 4.367 25 H 0.091 0.909 26 C -0.258 4.258 27 N -0.615 5.615 28 Si 0.792 3.208 29 H -0.215 1.215 30 H -0.222 1.222 31 H -0.198 1.198 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.259 0.741 36 H 0.179 0.821 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.094 0.906 43 H 0.262 0.738 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.207 0.793 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.312 -1.288 18.890 19.221 hybrid contribution -0.015 -0.889 -1.388 1.648 sum -3.326 -2.177 17.502 17.948 Atomic orbital electron populations 1.22333 0.74536 1.05776 1.05036 1.45446 1.08900 1.05899 1.53729 1.25625 0.84978 0.94736 1.04614 1.70203 1.21433 1.12023 1.21421 1.22053 0.96274 0.91323 1.09169 1.20690 0.91305 0.89029 1.11102 1.20602 0.99993 0.87647 0.95675 0.89874 1.22350 1.03164 0.78826 0.95255 1.48814 1.48651 1.06635 1.30053 1.19690 0.78703 0.86030 0.81879 1.90647 1.40112 1.84694 1.28389 1.22180 0.96338 0.93721 1.05431 0.85453 1.22721 0.98581 0.98463 0.95251 1.22336 0.81690 1.04369 0.93864 1.46163 1.12926 1.55003 1.23119 1.20500 0.89692 0.77721 0.81646 1.90813 1.52958 1.55231 1.43967 1.23102 0.93544 1.00544 0.85212 1.21330 0.96045 0.91627 0.84547 0.91408 1.42459 1.06312 1.82296 1.04666 1.19526 0.90929 1.37080 0.89199 0.90929 1.25381 0.97016 1.03491 0.99868 1.69783 1.11318 1.57706 1.22703 0.85301 0.78488 0.77757 0.79238 1.21524 1.22199 1.19824 0.88370 0.86810 0.90561 0.74096 0.82069 0.89115 0.89872 0.86723 0.87586 0.86051 0.90574 0.73782 0.91580 0.91623 0.79316 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 11.00 127.77 1.41 2.51 16 2 N -0.46 -11.80 3.15 -537.89 -1.70 -13.50 16 3 C 0.18 4.69 12.56 180.26 2.26 6.96 16 4 N -0.53 -17.83 11.25 -200.32 -2.25 -20.08 16 5 C -0.04 -1.40 10.87 83.52 0.91 -0.49 16 6 C -0.01 -0.17 5.95 40.95 0.24 0.08 16 7 C -0.02 -0.57 3.04 -10.45 -0.03 -0.60 16 8 H 0.08 2.78 6.70 -2.39 -0.02 2.76 16 9 C 0.13 3.69 6.51 86.61 0.56 4.26 16 10 N -0.61 -19.63 3.29 -810.10 -2.67 -22.30 16 11 C 0.55 16.76 7.28 87.66 0.64 17.40 16 12 O -0.56 -18.11 15.68 -3.05 -0.05 -18.16 16 13 C -0.15 -3.89 2.65 -11.49 -0.03 -3.92 16 14 H 0.13 3.44 7.99 -2.39 -0.02 3.42 16 15 C -0.11 -1.82 6.54 31.71 0.21 -1.61 16 16 C 0.10 1.28 7.78 86.83 0.68 1.96 16 17 N -0.72 -13.15 6.24 -459.80 -2.87 -16.02 16 18 C 0.52 14.37 7.44 87.90 0.65 15.02 16 19 O -0.55 -20.11 14.73 -3.04 -0.04 -20.16 16 20 C 0.10 3.78 4.91 86.53 0.42 4.20 16 21 C 0.18 6.86 3.16 45.88 0.15 7.00 16 22 H 0.07 2.76 6.26 -2.38 -0.01 2.74 16 23 N -0.72 -35.03 5.08 -318.75 -1.62 -36.65 16 24 C -0.24 -12.93 9.97 84.03 0.84 -12.09 16 25 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 26 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 27 N -0.96 -57.73 13.06 21.65 0.28 -57.45 16 28 Si 0.96 46.58 29.55 68.60 2.03 48.60 16 29 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 30 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 31 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.52 7.13 -2.39 -0.02 1.51 16 35 H 0.24 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.16 5.44 7.20 -2.91 -0.02 5.42 16 37 H 0.09 2.48 7.85 -2.39 -0.02 2.46 16 38 H 0.08 2.32 8.04 -2.38 -0.02 2.30 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.11 1.84 6.93 -2.38 -0.02 1.82 16 41 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.42 6.16 8.96 -92.71 -0.83 5.33 16 44 H 0.07 2.54 6.89 -2.39 -0.02 2.52 16 45 H 0.07 2.79 6.98 -2.38 -0.02 2.77 16 46 H 0.37 19.50 7.54 -92.71 -0.70 18.80 16 47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -78.17 381.90 -0.01 -78.18 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -0.50 Total: 40.08 kcal Atomic # 6 Polarization: 28.07 SS G_CDS: 9.37 Total: 37.44 kcal Atomic # 7 Polarization: -155.18 SS G_CDS: -10.82 Total: -166.00 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.09 Total: -38.32 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -78.17 -0.01 -78.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070675485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.636 kcal (2) G-P(sol) polarization free energy of solvation -78.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds