Wall clock time and date at job start Wed Apr 1 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35039 * 126.39887 * 2 1 4 4 N 1.30503 * 108.69816 * 180.26577 * 3 2 1 5 5 C 1.34127 * 109.25578 * 359.77023 * 4 3 2 6 6 C 1.34668 * 108.02073 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.58805 * 179.97438 * 6 5 4 8 8 H 1.09004 * 110.65386 * 201.83469 * 7 6 5 9 9 C 1.54587 * 110.83421 * 78.58890 * 7 6 5 10 10 N 1.48115 * 103.42507 * 204.44370 * 9 7 6 11 11 C 1.34778 * 127.03922 * 219.28614 * 10 9 7 12 12 O 1.21287 * 119.99411 * 359.71010 * 11 10 9 13 13 C 1.50699 * 120.00320 * 179.70626 * 11 10 9 14 14 H 1.09000 * 115.54849 * 50.23488 * 13 11 10 15 15 C 1.53075 * 117.51365 * 195.94720 * 13 11 10 16 16 C 1.52997 * 117.50013 * 264.55847 * 13 11 10 17 17 H 1.09004 * 117.49749 * 144.99637 * 16 13 11 18 18 C 1.50701 * 117.49917 * 0.02562 * 16 13 11 19 19 N 1.34778 * 120.00210 * 76.60610 * 18 16 13 20 20 O 1.21286 * 119.99413 * 256.33348 * 18 16 13 21 21 C 1.47487 * 105.93084 * 39.02310 * 10 9 7 22 22 C 1.54005 * 107.08398 * 334.78296 * 21 10 9 23 23 H 1.08998 * 110.32731 * 120.19893 * 22 21 10 24 24 N 1.46505 * 110.32448 * 242.31298 * 22 21 10 25 25 C 1.36940 * 119.99615 * 273.54527 * 24 22 21 26 26 H 1.08003 * 120.00064 * 359.97438 * 25 24 22 27 27 C 1.38814 * 119.99831 * 180.02562 * 25 24 22 28 28 N 1.31617 * 120.00096 * 359.97438 * 27 25 24 29 29 Si 1.86798 * 119.99797 * 179.97438 * 27 25 24 30 30 H 1.48499 * 109.47291 * 60.00215 * 29 27 25 31 31 H 1.48500 * 109.46949 * 179.97438 * 29 27 25 32 32 H 1.48492 * 109.47484 * 299.99628 * 29 27 25 33 33 H 1.09007 * 109.47401 * 270.11857 * 1 2 3 34 34 H 1.08994 * 109.47061 * 30.11993 * 1 2 3 35 35 H 1.09000 * 109.47506 * 150.12331 * 1 2 3 36 36 H 1.08002 * 125.64658 * 0.02562 * 3 2 1 37 37 H 1.07994 * 125.98350 * 180.02562 * 5 4 3 38 38 H 1.09004 * 110.62175 * 85.93289 * 9 7 6 39 39 H 1.08996 * 110.55026 * 322.92631 * 9 7 6 40 40 H 1.09000 * 117.51077 * 0.02562 * 15 13 11 41 41 H 1.08991 * 117.49609 * 214.96497 * 15 13 11 42 42 H 0.96994 * 119.99998 * 0.02562 * 19 18 16 43 43 H 0.96997 * 119.99858 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.91332 * 94.13755 * 21 10 9 45 45 H 1.08997 * 109.91612 * 215.41791 * 21 10 9 46 46 H 0.97000 * 120.00271 * 93.53997 * 24 22 21 47 47 H 0.96995 * 119.99924 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6506 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8363 -2.5429 0.0063 8 1 0.8163 -2.6338 -0.3674 9 6 1.9566 -3.1513 1.4222 10 7 2.0921 -4.6032 1.1623 11 6 1.5377 -5.6094 1.8671 12 8 0.8460 -5.3640 2.8327 13 6 1.7770 -7.0391 1.4552 14 1 2.8192 -7.3131 1.2919 15 6 0.8479 -8.1075 2.0370 16 6 0.7240 -7.7040 0.5664 17 1 1.0736 -8.4153 -0.1819 18 6 -0.4728 -6.8788 0.1692 19 7 -0.3562 -5.9418 -0.7926 20 8 -1.5421 -7.0613 0.7116 21 6 2.9527 -4.7225 -0.0295 22 6 2.8045 -3.4136 -0.8274 23 1 3.7705 -2.9183 -0.9253 24 7 2.2367 -3.6857 -2.1503 25 6 3.0585 -4.0280 -3.1908 26 1 4.1252 -4.0971 -3.0363 27 6 2.5207 -4.2853 -4.4444 28 7 1.2208 -4.2006 -4.6328 29 14 3.6418 -4.7516 -5.8639 30 1 4.3761 -5.9974 -5.5261 31 1 2.8272 -4.9736 -7.0856 32 1 4.6130 -3.6553 -6.1085 33 1 -0.3634 0.0021 1.0277 34 1 -0.3633 0.8889 -0.5157 35 1 -0.3634 -0.8911 -0.5119 36 1 1.9334 2.1144 0.0004 37 1 4.4368 -1.2612 -0.0079 38 1 1.0586 -2.9473 2.0054 39 1 2.8415 -2.7673 1.9298 40 1 0.0633 -7.7762 2.7173 41 1 1.2792 -9.0842 2.2563 42 1 0.4980 -5.7989 -1.2294 43 1 -1.1265 -5.4105 -1.0479 44 1 3.9909 -4.8564 0.2742 45 1 2.6293 -5.5670 -0.6380 46 1 1.2787 -3.6233 -2.2891 47 1 0.8450 -4.3800 -5.5088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070690909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:51 Heat of formation + Delta-G solvation = 40.644107 kcal Electronic energy + Delta-G solvation = -32159.383151 eV Core-core repulsion = 27958.758488 eV Total energy + Delta-G solvation = -4200.624663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.99191 -40.45829 -39.02923 -37.70696 -35.75997 -34.19759 -33.91052 -33.26049 -32.31248 -30.81448 -28.13947 -27.58744 -26.90651 -25.38509 -24.45005 -23.69699 -22.31921 -21.70030 -20.56897 -20.15363 -19.42523 -18.84380 -17.76741 -17.30159 -16.83425 -16.75597 -16.14325 -16.11141 -15.64215 -15.36010 -15.11881 -14.68528 -14.39443 -13.75178 -13.69991 -13.67217 -13.56686 -13.39646 -13.19236 -12.94096 -12.83184 -12.72765 -12.39671 -12.07863 -11.94501 -11.90499 -11.44341 -10.98269 -10.95656 -10.78418 -10.69638 -10.66404 -10.29060 -9.95079 -9.87327 -9.75902 -9.71469 -9.41848 -9.37995 -9.21575 -8.58814 -8.11125 -7.24494 -6.00547 -3.31619 2.16829 2.49209 2.77612 2.83470 3.01564 3.30816 3.36220 3.36888 3.38204 3.49845 3.84066 4.38363 4.46559 4.60830 4.68028 4.73723 4.74809 4.83185 4.92063 4.94025 5.06787 5.10119 5.26541 5.30093 5.34441 5.42468 5.45406 5.51168 5.59480 5.64957 5.66676 5.75891 5.85489 6.00203 6.06465 6.08375 6.16993 6.29851 6.50868 6.65907 6.92619 7.02508 7.32445 7.50891 7.62576 7.65977 8.15682 8.24147 8.24348 8.47507 9.29019 9.78307 10.13519 11.20768 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006872 B = 0.005485 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4073.412761 B = 5103.899196 C = 7764.170751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.457 5.457 3 C 0.172 3.828 4 N -0.494 5.494 5 C -0.020 4.020 6 C 0.005 3.995 7 C -0.035 4.035 8 H 0.087 0.913 9 C 0.120 3.880 10 N -0.609 5.609 11 C 0.557 3.443 12 O -0.541 6.541 13 C -0.167 4.167 14 H 0.136 0.864 15 C -0.115 4.115 16 C -0.165 4.165 17 H 0.141 0.859 18 C 0.544 3.456 19 N -0.838 5.838 20 O -0.546 6.546 21 C 0.071 3.929 22 C 0.180 3.820 23 H 0.077 0.923 24 N -0.711 5.711 25 C -0.250 4.250 26 H 0.074 0.926 27 C -0.003 4.003 28 N -0.929 5.929 29 Si 0.906 3.094 30 H -0.285 1.285 31 H -0.292 1.292 32 H -0.285 1.285 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.201 0.799 37 H 0.168 0.832 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.413 0.587 43 H 0.402 0.598 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.383 0.617 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 1.048 9.949 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.140 5.140 3 C -0.110 4.110 4 N -0.212 5.212 5 C -0.167 4.167 6 C -0.110 4.110 7 C -0.057 4.057 8 H 0.105 0.895 9 C -0.003 4.003 10 N -0.343 5.343 11 C 0.346 3.654 12 O -0.418 6.418 13 C -0.189 4.189 14 H 0.153 0.847 15 C -0.153 4.153 16 C -0.187 4.187 17 H 0.158 0.842 18 C 0.328 3.672 19 N -0.401 5.401 20 O -0.423 6.423 21 C -0.055 4.055 22 C 0.067 3.933 23 H 0.095 0.905 24 N -0.352 5.352 25 C -0.380 4.380 26 H 0.092 0.908 27 C -0.200 4.200 28 N -0.576 5.576 29 Si 0.737 3.263 30 H -0.211 1.211 31 H -0.218 1.218 32 H -0.211 1.211 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.217 0.783 37 H 0.185 0.815 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.244 0.756 43 H 0.232 0.768 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.217 0.783 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.147 1.349 10.784 10.869 hybrid contribution -0.239 -0.352 -1.598 1.653 sum -0.091 0.996 9.187 9.241 Atomic orbital electron populations 1.22036 0.76919 1.04956 1.03303 1.45221 1.07445 1.06745 1.54569 1.24804 0.85775 0.93231 1.07190 1.70242 1.19345 1.12110 1.19481 1.21959 0.95742 0.90841 1.08201 1.20806 0.91093 0.88674 1.10427 1.20864 1.01250 0.87701 0.95852 0.89481 1.22321 1.02412 0.79756 0.95840 1.48655 1.49944 1.05663 1.29994 1.19188 0.78847 0.85188 0.82224 1.90705 1.38934 1.84442 1.27712 1.22289 0.98455 0.92156 1.05965 0.84668 1.23003 1.00655 0.97944 0.93696 1.22322 0.96420 1.02745 0.97169 0.84152 1.19515 0.88684 0.79888 0.79124 1.43912 1.17202 1.38962 1.40023 1.90720 1.28826 1.68375 1.54424 1.23510 0.93446 1.03010 0.85576 1.21177 0.96015 0.90332 0.85780 0.90492 1.42420 1.06927 1.82218 1.03591 1.19170 0.90608 1.39747 0.88520 0.90817 1.24715 0.95804 1.01892 0.97610 1.69609 1.09739 1.55032 1.23172 0.86294 0.79617 0.78392 0.82009 1.21111 1.21753 1.21143 0.90684 0.89489 0.89417 0.78284 0.81524 0.90359 0.90551 0.86739 0.86916 0.75621 0.76769 0.91852 0.89650 0.78266 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 11.00 59.85 0.66 1.31 16 2 N -0.46 -5.81 3.15 -121.36 -0.38 -6.20 16 3 C 0.17 2.23 12.56 -90.38 -1.14 1.10 16 4 N -0.49 -7.87 11.25 -14.67 -0.17 -8.03 16 5 C -0.02 -0.30 10.87 -17.81 -0.19 -0.50 16 6 C 0.01 0.07 5.94 -81.60 -0.48 -0.41 16 7 C -0.04 -0.49 3.06 -90.09 -0.28 -0.76 16 8 H 0.09 1.28 6.70 -51.93 -0.35 0.93 16 9 C 0.12 1.61 6.50 -2.32 -0.02 1.59 16 10 N -0.61 -8.42 3.29 -169.98 -0.56 -8.98 16 11 C 0.56 8.53 6.64 -10.99 -0.07 8.46 16 12 O -0.54 -10.17 16.60 5.55 0.09 -10.08 16 13 C -0.17 -2.06 5.20 -91.73 -0.48 -2.54 16 14 H 0.14 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.12 -1.38 9.58 -26.69 -0.26 -1.63 16 16 C -0.17 -2.11 6.16 -91.77 -0.57 -2.67 16 17 H 0.14 1.45 8.14 -51.93 -0.42 1.02 16 18 C 0.54 8.77 6.74 -10.98 -0.07 8.70 16 19 N -0.84 -12.50 8.87 31.22 0.28 -12.23 16 20 O -0.55 -10.75 17.63 5.55 0.10 -10.65 16 21 C 0.07 0.96 6.56 -2.98 -0.02 0.94 16 22 C 0.18 2.78 3.16 -66.55 -0.21 2.57 16 23 H 0.08 1.24 6.24 -51.93 -0.32 0.92 16 24 N -0.71 -13.95 5.08 -52.09 -0.26 -14.21 16 25 C -0.25 -5.76 9.97 -15.06 -0.15 -5.91 16 26 H 0.07 1.66 7.83 -52.48 -0.41 1.25 16 27 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 28 N -0.93 -24.22 13.06 55.49 0.72 -23.49 16 29 Si 0.91 20.19 29.55 -169.99 -5.02 15.17 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 32 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.87 7.13 -51.93 -0.37 0.50 16 36 H 0.20 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.17 2.36 7.19 -52.49 -0.38 1.98 16 38 H 0.08 1.11 7.85 -51.93 -0.41 0.70 16 39 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 40 H 0.11 1.67 7.69 -51.93 -0.40 1.27 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.41 6.30 8.17 -40.82 -0.33 5.97 16 43 H 0.40 5.85 8.93 -40.82 -0.36 5.49 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.24 6.83 -51.93 -0.35 0.88 16 46 H 0.38 8.08 7.55 -40.82 -0.31 7.77 16 47 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -32.59 394.62 -9.13 -41.73 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -6.51 Total: 20.97 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -3.37 Total: 10.07 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -0.37 Total: -73.15 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.19 Total: -20.74 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.59 -9.13 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070690909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.370 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds