Wall clock time and date at job start Wed Apr 1 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35039 * 126.39887 * 2 1 4 4 N 1.30503 * 108.69816 * 180.26577 * 3 2 1 5 5 C 1.34127 * 109.25578 * 359.77023 * 4 3 2 6 6 C 1.34668 * 108.02073 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.58805 * 179.97438 * 6 5 4 8 8 H 1.09004 * 110.65386 * 201.83469 * 7 6 5 9 9 C 1.54587 * 110.83421 * 78.58890 * 7 6 5 10 10 N 1.48115 * 103.42507 * 204.44370 * 9 7 6 11 11 C 1.34778 * 127.03922 * 219.28614 * 10 9 7 12 12 O 1.21287 * 119.99411 * 359.71010 * 11 10 9 13 13 C 1.50699 * 120.00320 * 179.70626 * 11 10 9 14 14 H 1.09000 * 115.54849 * 50.23488 * 13 11 10 15 15 C 1.53075 * 117.51365 * 195.94720 * 13 11 10 16 16 C 1.52997 * 117.50013 * 264.55847 * 13 11 10 17 17 H 1.09004 * 117.49749 * 144.99637 * 16 13 11 18 18 C 1.50701 * 117.49917 * 0.02562 * 16 13 11 19 19 N 1.34778 * 120.00210 * 76.60610 * 18 16 13 20 20 O 1.21286 * 119.99413 * 256.33348 * 18 16 13 21 21 C 1.47487 * 105.93084 * 39.02310 * 10 9 7 22 22 C 1.54005 * 107.08398 * 334.78296 * 21 10 9 23 23 H 1.08998 * 110.32731 * 120.19893 * 22 21 10 24 24 N 1.46505 * 110.32448 * 242.31298 * 22 21 10 25 25 C 1.36940 * 119.99615 * 273.54527 * 24 22 21 26 26 H 1.08003 * 120.00064 * 359.97438 * 25 24 22 27 27 C 1.38814 * 119.99831 * 180.02562 * 25 24 22 28 28 N 1.31617 * 120.00096 * 359.97438 * 27 25 24 29 29 Si 1.86798 * 119.99797 * 179.97438 * 27 25 24 30 30 H 1.48499 * 109.47291 * 60.00215 * 29 27 25 31 31 H 1.48500 * 109.46949 * 179.97438 * 29 27 25 32 32 H 1.48492 * 109.47484 * 299.99628 * 29 27 25 33 33 H 1.09007 * 109.47401 * 270.11857 * 1 2 3 34 34 H 1.08994 * 109.47061 * 30.11993 * 1 2 3 35 35 H 1.09000 * 109.47506 * 150.12331 * 1 2 3 36 36 H 1.08002 * 125.64658 * 0.02562 * 3 2 1 37 37 H 1.07994 * 125.98350 * 180.02562 * 5 4 3 38 38 H 1.09004 * 110.62175 * 85.93289 * 9 7 6 39 39 H 1.08996 * 110.55026 * 322.92631 * 9 7 6 40 40 H 1.09000 * 117.51077 * 0.02562 * 15 13 11 41 41 H 1.08991 * 117.49609 * 214.96497 * 15 13 11 42 42 H 0.96994 * 119.99998 * 0.02562 * 19 18 16 43 43 H 0.96997 * 119.99858 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.91332 * 94.13755 * 21 10 9 45 45 H 1.08997 * 109.91612 * 215.41791 * 21 10 9 46 46 H 0.97000 * 120.00271 * 93.53997 * 24 22 21 47 47 H 0.96995 * 119.99924 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6506 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8363 -2.5429 0.0063 8 1 0.8163 -2.6338 -0.3674 9 6 1.9566 -3.1513 1.4222 10 7 2.0921 -4.6032 1.1623 11 6 1.5377 -5.6094 1.8671 12 8 0.8460 -5.3640 2.8327 13 6 1.7770 -7.0391 1.4552 14 1 2.8192 -7.3131 1.2919 15 6 0.8479 -8.1075 2.0370 16 6 0.7240 -7.7040 0.5664 17 1 1.0736 -8.4153 -0.1819 18 6 -0.4728 -6.8788 0.1692 19 7 -0.3562 -5.9418 -0.7926 20 8 -1.5421 -7.0613 0.7116 21 6 2.9527 -4.7225 -0.0295 22 6 2.8045 -3.4136 -0.8274 23 1 3.7705 -2.9183 -0.9253 24 7 2.2367 -3.6857 -2.1503 25 6 3.0585 -4.0280 -3.1908 26 1 4.1252 -4.0971 -3.0363 27 6 2.5207 -4.2853 -4.4444 28 7 1.2208 -4.2006 -4.6328 29 14 3.6418 -4.7516 -5.8639 30 1 4.3761 -5.9974 -5.5261 31 1 2.8272 -4.9736 -7.0856 32 1 4.6130 -3.6553 -6.1085 33 1 -0.3634 0.0021 1.0277 34 1 -0.3633 0.8889 -0.5157 35 1 -0.3634 -0.8911 -0.5119 36 1 1.9334 2.1144 0.0004 37 1 4.4368 -1.2612 -0.0079 38 1 1.0586 -2.9473 2.0054 39 1 2.8415 -2.7673 1.9298 40 1 0.0633 -7.7762 2.7173 41 1 1.2792 -9.0842 2.2563 42 1 0.4980 -5.7989 -1.2294 43 1 -1.1265 -5.4105 -1.0479 44 1 3.9909 -4.8564 0.2742 45 1 2.6293 -5.5670 -0.6380 46 1 1.2787 -3.6233 -2.2891 47 1 0.8450 -4.3800 -5.5088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070690909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:50 Heat of formation + Delta-G solvation = 17.673885 kcal Electronic energy + Delta-G solvation = -32160.379214 eV Core-core repulsion = 27958.758488 eV Total energy + Delta-G solvation = -4201.620726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.05122 -41.62694 -40.28530 -38.97858 -36.89431 -35.77796 -34.89535 -34.54556 -33.63988 -32.33494 -29.31073 -28.90633 -27.78046 -26.58272 -25.72941 -25.11294 -23.40013 -22.86166 -21.71072 -21.31212 -20.61605 -19.99638 -19.12939 -18.65027 -18.02253 -17.96349 -17.40497 -17.22390 -16.67797 -16.59795 -16.38687 -16.05605 -15.55535 -15.22879 -15.10697 -14.90359 -14.80643 -14.48493 -14.42745 -14.09748 -13.76712 -13.70103 -13.53543 -13.36355 -13.17624 -12.99350 -12.78111 -12.60940 -12.55276 -12.14082 -11.86024 -11.80580 -11.66998 -11.62577 -11.15306 -11.04472 -10.87947 -10.86496 -10.68633 -10.44329 -9.79963 -9.26509 -8.89959 -7.87055 -5.14022 1.10881 1.32779 1.54427 1.55281 1.57968 1.60805 1.77859 2.00708 2.25646 2.41841 2.62065 2.77116 3.36906 3.42374 3.57678 3.62631 3.70830 3.77528 3.83724 3.92355 3.98706 4.01372 4.10669 4.21223 4.31948 4.36332 4.40736 4.51632 4.59940 4.65238 4.68631 4.71780 4.77828 4.84142 4.95385 5.00691 5.07593 5.13632 5.36677 5.49831 5.66795 5.77058 5.82580 6.32270 6.36042 6.37882 6.48841 7.05710 7.17224 7.22074 7.43497 8.11240 8.36549 9.34257 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006872 B = 0.005485 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4073.412761 B = 5103.899196 C = 7764.170751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.459 5.459 3 C 0.178 3.822 4 N -0.532 5.532 5 C -0.038 4.038 6 C -0.008 4.008 7 C -0.019 4.019 8 H 0.077 0.923 9 C 0.125 3.875 10 N -0.603 5.603 11 C 0.550 3.450 12 O -0.582 6.582 13 C -0.163 4.163 14 H 0.173 0.827 15 C -0.110 4.110 16 C -0.169 4.169 17 H 0.173 0.827 18 C 0.536 3.464 19 N -0.830 5.830 20 O -0.590 6.590 21 C 0.080 3.920 22 C 0.178 3.822 23 H 0.077 0.923 24 N -0.715 5.715 25 C -0.230 4.230 26 H 0.081 0.919 27 C -0.058 4.058 28 N -0.958 5.958 29 Si 0.954 3.046 30 H -0.275 1.275 31 H -0.307 1.307 32 H -0.289 1.289 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.238 0.762 37 H 0.171 0.829 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.413 0.587 43 H 0.400 0.600 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.375 0.625 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 0.720 10.534 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.141 5.141 3 C -0.104 4.104 4 N -0.250 5.250 5 C -0.185 4.185 6 C -0.123 4.123 7 C -0.040 4.040 8 H 0.095 0.905 9 C 0.001 3.999 10 N -0.335 5.335 11 C 0.339 3.661 12 O -0.463 6.463 13 C -0.183 4.183 14 H 0.190 0.810 15 C -0.148 4.148 16 C -0.190 4.190 17 H 0.190 0.810 18 C 0.322 3.678 19 N -0.392 5.392 20 O -0.471 6.471 21 C -0.045 4.045 22 C 0.067 3.933 23 H 0.095 0.905 24 N -0.355 5.355 25 C -0.362 4.362 26 H 0.099 0.901 27 C -0.251 4.251 28 N -0.608 5.608 29 Si 0.785 3.215 30 H -0.201 1.201 31 H -0.234 1.234 32 H -0.216 1.216 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.254 0.746 37 H 0.188 0.812 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.172 0.828 42 H 0.244 0.756 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.691 1.029 11.385 11.555 hybrid contribution -0.711 -0.105 -1.706 1.851 sum 0.980 0.924 9.678 9.772 Atomic orbital electron populations 1.22285 0.74931 1.05733 1.04702 1.45447 1.08711 1.06202 1.53731 1.25558 0.85134 0.94668 1.05038 1.70219 1.21146 1.12388 1.21267 1.22146 0.96349 0.91149 1.08874 1.20813 0.91286 0.89141 1.11101 1.20627 1.00141 0.87625 0.95637 0.90477 1.22297 1.02518 0.79691 0.95376 1.48653 1.49501 1.05673 1.29667 1.19770 0.78048 0.86545 0.81700 1.90691 1.40721 1.85211 1.29674 1.22436 1.00207 0.90179 1.05518 0.81013 1.23111 0.99733 0.99607 0.92322 1.22434 0.95096 1.02917 0.98516 0.80962 1.20185 0.89310 0.79848 0.78487 1.43910 1.17088 1.38588 1.39611 1.90695 1.30837 1.69688 1.55852 1.23323 0.94727 1.01350 0.85101 1.21295 0.96040 0.91539 0.84436 0.90545 1.42462 1.06251 1.82166 1.04574 1.19484 0.91196 1.36607 0.88896 0.90094 1.25227 0.96550 1.03816 0.99536 1.69730 1.10859 1.57568 1.22643 0.85519 0.78053 0.78235 0.79695 1.20112 1.23414 1.21643 0.88985 0.86901 0.90496 0.74600 0.81193 0.91306 0.89386 0.89959 0.82816 0.75575 0.76965 0.89208 0.89856 0.79231 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 11.00 127.77 1.41 2.49 16 2 N -0.46 -11.01 3.15 -537.88 -1.70 -12.71 16 3 C 0.18 4.30 12.56 180.26 2.26 6.56 16 4 N -0.53 -16.38 11.25 -200.32 -2.25 -18.64 16 5 C -0.04 -1.14 10.87 83.52 0.91 -0.23 16 6 C -0.01 -0.21 5.94 40.95 0.24 0.03 16 7 C -0.02 -0.51 3.06 -10.45 -0.03 -0.54 16 8 H 0.08 2.26 6.70 -2.39 -0.02 2.25 16 9 C 0.12 3.22 6.50 86.61 0.56 3.78 16 10 N -0.60 -15.70 3.29 -810.09 -2.67 -18.37 16 11 C 0.55 16.10 6.64 87.66 0.58 16.68 16 12 O -0.58 -21.90 16.60 -3.05 -0.05 -21.95 16 13 C -0.16 -3.56 5.20 -11.52 -0.06 -3.62 16 14 H 0.17 2.51 8.14 -2.39 -0.02 2.49 16 15 C -0.11 -2.39 9.58 30.62 0.29 -2.10 16 16 C -0.17 -3.92 6.16 -11.54 -0.07 -4.00 16 17 H 0.17 2.91 8.14 -2.38 -0.02 2.89 16 18 C 0.54 17.13 6.74 87.66 0.59 17.72 16 19 N -0.83 -24.76 8.87 -173.53 -1.54 -26.30 16 20 O -0.59 -23.71 17.63 -3.05 -0.05 -23.77 16 21 C 0.08 1.99 6.56 86.53 0.57 2.55 16 22 C 0.18 5.25 3.16 45.88 0.15 5.39 16 23 H 0.08 2.33 6.24 -2.39 -0.01 2.31 16 24 N -0.71 -27.38 5.08 -318.72 -1.62 -29.00 16 25 C -0.23 -10.31 9.97 84.03 0.84 -9.47 16 26 H 0.08 3.48 7.83 -2.91 -0.02 3.45 16 27 C -0.06 -2.84 5.50 84.86 0.47 -2.37 16 28 N -0.96 -50.34 13.06 21.65 0.28 -50.06 16 29 Si 0.95 41.19 29.55 68.60 2.03 43.22 16 30 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 31 H -0.31 -13.94 7.11 99.48 0.71 -13.24 16 32 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 33 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.47 7.13 -2.39 -0.02 1.46 16 36 H 0.24 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.17 4.71 7.19 -2.91 -0.02 4.68 16 38 H 0.07 1.94 7.85 -2.38 -0.02 1.92 16 39 H 0.09 2.10 8.04 -2.39 -0.02 2.08 16 40 H 0.08 2.38 7.69 -2.39 -0.02 2.36 16 41 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.41 12.37 8.17 -92.71 -0.76 11.61 16 43 H 0.40 11.97 8.93 -92.71 -0.83 11.14 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.08 2.18 6.83 -2.39 -0.02 2.16 16 46 H 0.37 15.75 7.55 -92.71 -0.70 15.05 16 47 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -72.21 394.62 -0.10 -72.31 By element: Atomic # 1 Polarization: 53.61 SS G_CDS: -1.24 Total: 52.37 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 8.71 Total: 32.89 kcal Atomic # 7 Polarization: -145.58 SS G_CDS: -9.49 Total: -155.07 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.10 Total: -45.72 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -72.21 -0.10 -72.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070690909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.985 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds