Wall clock time and date at job start Wed Apr 1 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35042 * 126.39586 * 2 1 4 4 N 1.30491 * 108.69960 * 180.26618 * 3 2 1 5 5 C 1.34120 * 109.25807 * 359.77037 * 4 3 2 6 6 C 1.34669 * 108.02063 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.59127 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.88453 * 207.45294 * 7 6 5 9 9 C 1.54914 * 110.99986 * 83.57789 * 7 6 5 10 10 N 1.47426 * 104.82992 * 204.87852 * 9 7 6 11 11 C 1.34777 * 125.64500 * 204.16642 * 10 9 7 12 12 O 1.21275 * 120.00167 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.99872 * 179.97438 * 11 10 9 14 14 H 1.09001 * 110.21523 * 41.92658 * 13 11 10 15 15 C 1.54482 * 110.24907 * 279.99867 * 13 11 10 16 16 C 1.54627 * 101.76845 * 215.58520 * 15 13 11 17 17 C 1.51281 * 104.19419 * 24.79229 * 16 15 13 18 18 O 1.21286 * 124.94495 * 163.71213 * 17 16 15 19 19 N 1.34422 * 110.12084 * 343.75016 * 17 16 15 20 20 C 1.47018 * 108.70517 * 24.12623 * 10 9 7 21 21 C 1.54325 * 107.40412 * 358.86539 * 20 10 9 22 22 H 1.09000 * 110.72188 * 96.24097 * 21 20 10 23 23 N 1.46495 * 110.72250 * 219.52320 * 21 20 10 24 24 C 1.36934 * 119.99717 * 273.54393 * 23 21 20 25 25 H 1.08002 * 120.00471 * 359.97438 * 24 23 21 26 26 C 1.38816 * 119.99836 * 180.02562 * 24 23 21 27 27 N 1.31613 * 120.00160 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99860 * 180.02562 * 26 24 23 29 29 H 1.48495 * 109.47431 * 59.99378 * 28 26 24 30 30 H 1.48501 * 109.47158 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.46962 * 299.99269 * 28 26 24 32 32 H 1.08999 * 109.47134 * 270.11328 * 1 2 3 33 33 H 1.08999 * 109.47170 * 30.12309 * 1 2 3 34 34 H 1.09010 * 109.46800 * 150.11992 * 1 2 3 35 35 H 1.08008 * 125.65033 * 0.07169 * 3 2 1 36 36 H 1.08007 * 125.98930 * 179.97438 * 5 4 3 37 37 H 1.08999 * 110.37121 * 86.03587 * 9 7 6 38 38 H 1.09001 * 110.45739 * 323.76199 * 9 7 6 39 39 H 1.09001 * 110.96129 * 333.70036 * 15 13 11 40 40 H 1.08994 * 110.96859 * 97.42587 * 15 13 11 41 41 H 1.08995 * 110.48808 * 143.47124 * 16 15 13 42 42 H 1.08999 * 110.48525 * 265.99011 * 16 15 13 43 43 H 0.96998 * 124.35117 * 179.59192 * 19 17 16 44 44 H 1.09002 * 109.88241 * 118.36067 * 20 10 9 45 45 H 1.09000 * 109.88049 * 239.37196 * 20 10 9 46 46 H 0.96997 * 120.00433 * 93.54551 * 23 21 20 47 47 H 0.97005 * 120.00291 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6904 -0.0057 5 6 3.5461 -0.6503 -0.0045 6 6 2.2773 -1.1017 0.0028 7 6 1.8365 -2.5428 0.0062 8 1 0.8560 -2.6504 -0.4578 9 6 1.8367 -3.1201 1.4438 10 7 2.0010 -4.5744 1.2664 11 6 1.6138 -5.5214 2.1438 12 8 1.0797 -5.2017 3.1846 13 6 1.8446 -6.9774 1.8316 14 1 2.8334 -7.1167 1.3944 15 6 0.7556 -7.4965 0.8667 16 6 0.5531 -8.9447 1.3693 17 6 0.9909 -8.8996 2.8167 18 8 0.7327 -9.7449 3.6472 19 7 1.7070 -7.7859 3.0487 20 6 2.6562 -4.8207 -0.0265 21 6 2.8848 -3.4495 -0.6967 22 1 3.8956 -3.0899 -0.5044 23 7 2.6256 -3.5266 -2.1365 24 6 3.6220 -3.9153 -2.9916 25 1 4.5991 -4.1645 -2.6047 26 6 3.3766 -3.9879 -4.3560 27 7 2.1862 -3.6837 -4.8276 28 14 4.7357 -4.5187 -5.5224 29 1 5.1876 -5.8875 -5.1658 30 1 4.2218 -4.5148 -6.9157 31 1 5.8780 -3.5761 -5.4131 32 1 -0.3633 0.0020 1.0277 33 1 -0.3633 0.8889 -0.5157 34 1 -0.3633 -0.8912 -0.5120 35 1 1.9334 2.1145 0.0011 36 1 4.4369 -1.2610 -0.0087 37 1 0.8909 -2.9028 1.9401 38 1 2.6683 -2.7117 2.0182 39 1 -0.1622 -6.9170 0.9666 40 1 1.1106 -7.4866 -0.1638 41 1 -0.4962 -9.2304 1.2969 42 1 1.1760 -9.6360 0.8017 43 1 2.0843 -7.5474 3.9098 44 1 3.6121 -5.3200 0.1315 45 1 2.0149 -5.4383 -0.6553 46 1 1.7483 -3.3024 -2.4841 47 1 2.0145 -3.7347 -5.7810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070711776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:46 Heat of formation + Delta-G solvation = 19.951181 kcal Electronic energy + Delta-G solvation = -31175.997913 eV Core-core repulsion = 26974.475938 eV Total energy + Delta-G solvation = -4201.521975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.95908 -40.93999 -39.45565 -37.69547 -36.21520 -34.27537 -33.89917 -32.48523 -31.47819 -30.81533 -29.03983 -27.72739 -27.27832 -26.87820 -24.33164 -23.36020 -22.34117 -21.70992 -20.71549 -20.51100 -19.58250 -19.36016 -17.74646 -17.43831 -17.34801 -16.80442 -16.10825 -15.89111 -15.57626 -15.52112 -14.84993 -14.65987 -14.31626 -13.84557 -13.82107 -13.63621 -13.46573 -13.43328 -13.30281 -13.12566 -12.92060 -12.83228 -12.75176 -12.68840 -12.21041 -12.00753 -11.88673 -11.56931 -11.37889 -10.99487 -10.92198 -10.63796 -10.27515 -10.17971 -10.02556 -9.89916 -9.71527 -9.39597 -9.29358 -9.12284 -8.62994 -8.08648 -7.24161 -5.96501 -3.28212 2.18399 2.38656 2.42116 2.73479 2.93236 3.28990 3.33310 3.39211 3.40046 3.41393 4.09858 4.12804 4.36660 4.42515 4.65964 4.69914 4.72024 4.75121 4.84303 4.87091 4.91241 5.05673 5.15689 5.25268 5.33350 5.40305 5.43286 5.45028 5.53772 5.60089 5.61719 5.67690 5.70464 5.89015 5.97900 6.08492 6.12134 6.25548 6.48290 6.53105 6.64057 6.81867 6.96873 7.35218 7.45803 7.53034 7.97673 8.09613 8.19471 8.28384 9.32543 9.82401 10.16950 11.25029 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007599 B = 0.003952 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3683.765057 B = 7083.799097 C = 9967.893857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.459 5.459 3 C 0.172 3.828 4 N -0.494 5.494 5 C -0.011 4.011 6 C 0.003 3.997 7 C -0.036 4.036 8 H 0.090 0.910 9 C 0.122 3.878 10 N -0.606 5.606 11 C 0.521 3.479 12 O -0.542 6.542 13 C 0.117 3.883 14 H 0.109 0.891 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.524 3.476 18 O -0.536 6.536 19 N -0.709 5.709 20 C 0.065 3.935 21 C 0.188 3.812 22 H 0.075 0.925 23 N -0.706 5.706 24 C -0.251 4.251 25 H 0.074 0.926 26 C -0.003 4.003 27 N -0.928 5.928 28 Si 0.907 3.093 29 H -0.284 1.284 30 H -0.291 1.291 31 H -0.284 1.284 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.200 0.800 36 H 0.168 0.832 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.414 0.586 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.386 0.614 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 0.668 9.900 10.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.142 5.142 3 C -0.109 4.109 4 N -0.212 5.212 5 C -0.159 4.159 6 C -0.112 4.112 7 C -0.057 4.057 8 H 0.108 0.892 9 C -0.001 4.001 10 N -0.340 5.340 11 C 0.307 3.693 12 O -0.419 6.419 13 C 0.008 3.992 14 H 0.126 0.874 15 C -0.159 4.159 16 C -0.194 4.194 17 C 0.310 3.690 18 O -0.413 6.413 19 N -0.364 5.364 20 C -0.061 4.061 21 C 0.074 3.926 22 H 0.093 0.907 23 N -0.346 5.346 24 C -0.382 4.382 25 H 0.092 0.908 26 C -0.200 4.200 27 N -0.575 5.575 28 Si 0.737 3.263 29 H -0.211 1.211 30 H -0.217 1.217 31 H -0.210 1.210 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.217 0.783 36 H 0.185 0.815 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.254 0.746 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.221 0.779 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.127 0.779 10.677 11.473 hybrid contribution -0.142 -0.377 -0.687 0.797 sum -4.269 0.402 9.989 10.871 Atomic orbital electron populations 1.22017 0.77047 1.04865 1.03195 1.45212 1.07357 1.06765 1.54879 1.24802 0.85802 0.93194 1.07151 1.70243 1.19319 1.12191 1.19424 1.21983 0.95827 0.90731 1.07353 1.20676 0.91114 0.88458 1.10906 1.21020 1.01312 0.88034 0.95333 0.89224 1.22176 1.02201 0.79551 0.96170 1.48466 1.58921 1.06284 1.20333 1.20283 0.78658 0.87019 0.83322 1.90718 1.43438 1.82560 1.25199 1.21568 1.02183 0.88650 0.86811 0.87366 1.22613 0.98464 0.95110 0.99729 1.22374 1.04962 0.98243 0.93868 1.20855 0.76753 0.80664 0.90704 1.90757 1.57335 1.41289 1.51893 1.45958 1.55505 1.22615 1.12370 1.23544 0.97174 1.02879 0.82462 1.21204 0.96356 0.89270 0.85722 0.90742 1.42277 1.13535 1.80155 0.98600 1.19150 0.92354 1.38718 0.87940 0.90843 1.24737 0.96750 1.01570 0.96914 1.69633 1.20603 1.54025 1.13254 0.86288 0.81232 0.78509 0.80256 1.21057 1.21681 1.21028 0.90764 0.89535 0.89522 0.78298 0.81520 0.90808 0.90839 0.89428 0.87456 0.87568 0.87143 0.74607 0.91442 0.90055 0.77939 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 11.01 59.85 0.66 1.27 16 2 N -0.46 -5.78 3.15 -121.36 -0.38 -6.16 16 3 C 0.17 2.27 12.56 -90.38 -1.14 1.13 16 4 N -0.49 -8.13 11.25 -14.67 -0.16 -8.29 16 5 C -0.01 -0.18 11.02 -17.82 -0.20 -0.38 16 6 C 0.00 0.04 6.02 -81.60 -0.49 -0.45 16 7 C -0.04 -0.48 2.91 -89.48 -0.26 -0.75 16 8 H 0.09 1.24 7.10 -51.93 -0.37 0.87 16 9 C 0.12 1.54 6.37 -2.53 -0.02 1.52 16 10 N -0.61 -7.59 3.33 -170.52 -0.57 -8.16 16 11 C 0.52 6.75 7.05 -10.99 -0.08 6.68 16 12 O -0.54 -8.80 16.79 5.56 0.09 -8.70 16 13 C 0.12 1.21 3.28 -68.16 -0.22 0.98 16 14 H 0.11 0.94 7.66 -51.93 -0.40 0.54 16 15 C -0.12 -1.08 6.50 -25.10 -0.16 -1.24 16 16 C -0.15 -1.36 6.86 -26.74 -0.18 -1.55 16 17 C 0.52 6.54 8.43 -10.86 -0.09 6.45 16 18 O -0.54 -8.78 18.03 5.55 0.10 -8.68 16 19 N -0.71 -8.06 5.46 -53.88 -0.29 -8.35 16 20 C 0.07 0.86 6.04 -3.07 -0.02 0.84 16 21 C 0.19 2.94 2.95 -65.96 -0.19 2.74 16 22 H 0.07 1.20 6.41 -51.93 -0.33 0.87 16 23 N -0.71 -14.59 5.18 -51.52 -0.27 -14.86 16 24 C -0.25 -5.99 9.98 -15.06 -0.15 -6.14 16 25 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 26 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 27 N -0.93 -25.32 13.06 55.49 0.72 -24.60 16 28 Si 0.91 20.49 29.55 -169.99 -5.02 15.47 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 31 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.76 7.21 -51.92 -0.37 0.39 16 35 H 0.20 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.17 2.58 6.94 -52.48 -0.36 2.21 16 37 H 0.07 0.93 8.04 -51.93 -0.42 0.52 16 38 H 0.07 0.93 8.03 -51.93 -0.42 0.52 16 39 H 0.09 0.84 7.90 -51.93 -0.41 0.42 16 40 H 0.11 0.83 7.75 -51.93 -0.40 0.43 16 41 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.41 4.65 8.94 -40.82 -0.36 4.29 16 44 H 0.07 0.82 7.98 -51.93 -0.41 0.40 16 45 H 0.08 1.11 7.46 -51.93 -0.39 0.73 16 46 H 0.39 8.72 7.72 -40.82 -0.32 8.41 16 47 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -33.72 389.52 -9.18 -42.90 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -6.63 Total: 12.61 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: -2.64 Total: 10.95 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.95 Total: -70.42 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.19 Total: -17.39 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.72 -9.18 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070711776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.851 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds