Wall clock time and date at job start Wed Apr 1 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35042 * 126.39586 * 2 1 4 4 N 1.30491 * 108.69960 * 180.26618 * 3 2 1 5 5 C 1.34120 * 109.25807 * 359.77037 * 4 3 2 6 6 C 1.34669 * 108.02063 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.59127 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.88453 * 207.45294 * 7 6 5 9 9 C 1.54914 * 110.99986 * 83.57789 * 7 6 5 10 10 N 1.47426 * 104.82992 * 204.87852 * 9 7 6 11 11 C 1.34777 * 125.64500 * 204.16642 * 10 9 7 12 12 O 1.21275 * 120.00167 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.99872 * 179.97438 * 11 10 9 14 14 H 1.09001 * 110.21523 * 41.92658 * 13 11 10 15 15 C 1.54482 * 110.24907 * 279.99867 * 13 11 10 16 16 C 1.54627 * 101.76845 * 215.58520 * 15 13 11 17 17 C 1.51281 * 104.19419 * 24.79229 * 16 15 13 18 18 O 1.21286 * 124.94495 * 163.71213 * 17 16 15 19 19 N 1.34422 * 110.12084 * 343.75016 * 17 16 15 20 20 C 1.47018 * 108.70517 * 24.12623 * 10 9 7 21 21 C 1.54325 * 107.40412 * 358.86539 * 20 10 9 22 22 H 1.09000 * 110.72188 * 96.24097 * 21 20 10 23 23 N 1.46495 * 110.72250 * 219.52320 * 21 20 10 24 24 C 1.36934 * 119.99717 * 273.54393 * 23 21 20 25 25 H 1.08002 * 120.00471 * 359.97438 * 24 23 21 26 26 C 1.38816 * 119.99836 * 180.02562 * 24 23 21 27 27 N 1.31613 * 120.00160 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99860 * 180.02562 * 26 24 23 29 29 H 1.48495 * 109.47431 * 59.99378 * 28 26 24 30 30 H 1.48501 * 109.47158 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.46962 * 299.99269 * 28 26 24 32 32 H 1.08999 * 109.47134 * 270.11328 * 1 2 3 33 33 H 1.08999 * 109.47170 * 30.12309 * 1 2 3 34 34 H 1.09010 * 109.46800 * 150.11992 * 1 2 3 35 35 H 1.08008 * 125.65033 * 0.07169 * 3 2 1 36 36 H 1.08007 * 125.98930 * 179.97438 * 5 4 3 37 37 H 1.08999 * 110.37121 * 86.03587 * 9 7 6 38 38 H 1.09001 * 110.45739 * 323.76199 * 9 7 6 39 39 H 1.09001 * 110.96129 * 333.70036 * 15 13 11 40 40 H 1.08994 * 110.96859 * 97.42587 * 15 13 11 41 41 H 1.08995 * 110.48808 * 143.47124 * 16 15 13 42 42 H 1.08999 * 110.48525 * 265.99011 * 16 15 13 43 43 H 0.96998 * 124.35117 * 179.59192 * 19 17 16 44 44 H 1.09002 * 109.88241 * 118.36067 * 20 10 9 45 45 H 1.09000 * 109.88049 * 239.37196 * 20 10 9 46 46 H 0.96997 * 120.00433 * 93.54551 * 23 21 20 47 47 H 0.97005 * 120.00291 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6904 -0.0057 5 6 3.5461 -0.6503 -0.0045 6 6 2.2773 -1.1017 0.0028 7 6 1.8365 -2.5428 0.0062 8 1 0.8560 -2.6504 -0.4578 9 6 1.8367 -3.1201 1.4438 10 7 2.0010 -4.5744 1.2664 11 6 1.6138 -5.5214 2.1438 12 8 1.0797 -5.2017 3.1846 13 6 1.8446 -6.9774 1.8316 14 1 2.8334 -7.1167 1.3944 15 6 0.7556 -7.4965 0.8667 16 6 0.5531 -8.9447 1.3693 17 6 0.9909 -8.8996 2.8167 18 8 0.7327 -9.7449 3.6472 19 7 1.7070 -7.7859 3.0487 20 6 2.6562 -4.8207 -0.0265 21 6 2.8848 -3.4495 -0.6967 22 1 3.8956 -3.0899 -0.5044 23 7 2.6256 -3.5266 -2.1365 24 6 3.6220 -3.9153 -2.9916 25 1 4.5991 -4.1645 -2.6047 26 6 3.3766 -3.9879 -4.3560 27 7 2.1862 -3.6837 -4.8276 28 14 4.7357 -4.5187 -5.5224 29 1 5.1876 -5.8875 -5.1658 30 1 4.2218 -4.5148 -6.9157 31 1 5.8780 -3.5761 -5.4131 32 1 -0.3633 0.0020 1.0277 33 1 -0.3633 0.8889 -0.5157 34 1 -0.3633 -0.8912 -0.5120 35 1 1.9334 2.1145 0.0011 36 1 4.4369 -1.2610 -0.0087 37 1 0.8909 -2.9028 1.9401 38 1 2.6683 -2.7117 2.0182 39 1 -0.1622 -6.9170 0.9666 40 1 1.1106 -7.4866 -0.1638 41 1 -0.4962 -9.2304 1.2969 42 1 1.1760 -9.6360 0.8017 43 1 2.0843 -7.5474 3.9098 44 1 3.6121 -5.3200 0.1315 45 1 2.0149 -5.4383 -0.6553 46 1 1.7483 -3.3024 -2.4841 47 1 2.0145 -3.7347 -5.7810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070711776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:45 Heat of formation + Delta-G solvation = -3.697722 kcal Electronic energy + Delta-G solvation = -31177.023407 eV Core-core repulsion = 26974.475938 eV Total energy + Delta-G solvation = -4202.547469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.02488 -41.90687 -40.52330 -38.87912 -37.24052 -35.84492 -34.87680 -33.78163 -32.41173 -32.23449 -30.02821 -29.09437 -28.28496 -27.72735 -25.85453 -24.57443 -23.24538 -22.87341 -21.65863 -21.59614 -20.67835 -20.44256 -19.13657 -18.60323 -18.37391 -17.94664 -17.20000 -16.92516 -16.63157 -16.49424 -16.31079 -15.78441 -15.39674 -15.25138 -15.08464 -14.71353 -14.65816 -14.47376 -14.35234 -14.09277 -13.88592 -13.81202 -13.67872 -13.56269 -13.35416 -13.12726 -12.94818 -12.83446 -12.63308 -12.58428 -12.16636 -12.11059 -11.76485 -11.70372 -11.25691 -11.03821 -10.91986 -10.85141 -10.41480 -10.22627 -9.72145 -9.23297 -8.97705 -7.88137 -5.16192 1.12550 1.39211 1.42561 1.55327 1.57693 1.61537 1.74421 2.00945 2.27551 2.37132 2.62299 3.18195 3.29776 3.41211 3.52716 3.60383 3.72405 3.79128 3.92923 3.97098 4.01713 4.04331 4.13685 4.21769 4.34259 4.43730 4.45722 4.52108 4.57869 4.65078 4.71019 4.80454 4.80893 4.91149 4.97889 5.00469 5.03400 5.14100 5.31874 5.49917 5.63213 5.63705 5.83916 5.89831 6.31434 6.39013 6.40599 6.94488 7.13098 7.19416 7.41794 8.10800 8.34488 9.34230 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007599 B = 0.003952 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3683.765057 B = 7083.799097 C = 9967.893857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.459 5.459 3 C 0.178 3.822 4 N -0.536 5.536 5 C -0.039 4.039 6 C -0.004 4.004 7 C -0.020 4.020 8 H 0.090 0.910 9 C 0.129 3.871 10 N -0.601 5.601 11 C 0.522 3.478 12 O -0.576 6.576 13 C 0.119 3.881 14 H 0.134 0.866 15 C -0.115 4.115 16 C -0.144 4.144 17 C 0.516 3.484 18 O -0.583 6.583 19 N -0.708 5.708 20 C 0.078 3.922 21 C 0.182 3.818 22 H 0.070 0.930 23 N -0.714 5.714 24 C -0.232 4.232 25 H 0.082 0.918 26 C -0.062 4.062 27 N -0.964 5.964 28 Si 0.958 3.042 29 H -0.273 1.273 30 H -0.304 1.304 31 H -0.287 1.287 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.239 0.761 36 H 0.161 0.839 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.412 0.588 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.376 0.624 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 0.542 10.075 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.141 5.141 3 C -0.104 4.104 4 N -0.254 5.254 5 C -0.186 4.186 6 C -0.120 4.120 7 C -0.041 4.041 8 H 0.108 0.892 9 C 0.005 3.995 10 N -0.334 5.334 11 C 0.311 3.689 12 O -0.456 6.456 13 C 0.011 3.989 14 H 0.151 0.849 15 C -0.154 4.154 16 C -0.184 4.184 17 C 0.304 3.696 18 O -0.463 6.463 19 N -0.362 5.362 20 C -0.047 4.047 21 C 0.071 3.929 22 H 0.088 0.912 23 N -0.353 5.353 24 C -0.364 4.364 25 H 0.100 0.900 26 C -0.255 4.255 27 N -0.615 5.615 28 Si 0.788 3.212 29 H -0.198 1.198 30 H -0.231 1.231 31 H -0.214 1.214 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.255 0.745 36 H 0.178 0.822 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.153 0.847 43 H 0.251 0.749 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.208 0.792 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.328 0.661 10.887 11.734 hybrid contribution -0.069 -0.208 -0.619 0.657 sum -4.397 0.453 10.267 11.178 Atomic orbital electron populations 1.22332 0.74529 1.05935 1.04890 1.45453 1.08881 1.05958 1.53786 1.25559 0.85086 0.94761 1.05005 1.70189 1.21472 1.12411 1.21354 1.22060 0.96484 0.91132 1.08962 1.20724 0.91092 0.89274 1.10880 1.20835 1.00382 0.87415 0.95494 0.89213 1.22095 1.02388 0.79610 0.95359 1.48409 1.58644 1.06256 1.20046 1.20710 0.77696 0.87960 0.82579 1.90712 1.45018 1.83217 1.26625 1.21747 1.04038 0.86514 0.86639 0.84866 1.22660 0.97698 0.94759 1.00232 1.22409 1.06006 0.98719 0.91229 1.21495 0.76103 0.80102 0.91881 1.90729 1.59103 1.42943 1.53570 1.46070 1.54865 1.22471 1.12789 1.23217 0.98227 1.00863 0.82385 1.21335 0.96882 0.91177 0.83543 0.91182 1.42332 1.12368 1.80247 1.00373 1.19511 0.93042 1.35623 0.88228 0.90019 1.25325 0.98242 1.03459 0.98483 1.69764 1.22233 1.56851 1.12612 0.85452 0.79065 0.78558 0.78098 1.19842 1.23094 1.21363 0.88731 0.87075 0.89929 0.74503 0.82176 0.90504 0.90843 0.90078 0.85542 0.86552 0.84744 0.74899 0.89590 0.89851 0.79184 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 11.01 127.77 1.41 2.34 16 2 N -0.46 -10.78 3.15 -537.87 -1.70 -12.48 16 3 C 0.18 4.39 12.56 180.27 2.26 6.66 16 4 N -0.54 -17.43 11.25 -200.31 -2.25 -19.68 16 5 C -0.04 -1.26 11.02 83.52 0.92 -0.34 16 6 C 0.00 -0.11 6.02 40.95 0.25 0.14 16 7 C -0.02 -0.52 2.91 -10.06 -0.03 -0.55 16 8 H 0.09 2.36 7.10 -2.39 -0.02 2.35 16 9 C 0.13 3.05 6.37 86.86 0.55 3.60 16 10 N -0.60 -13.77 3.33 -811.80 -2.70 -16.47 16 11 C 0.52 12.53 7.05 87.66 0.62 13.15 16 12 O -0.58 -18.04 16.79 -3.01 -0.05 -18.09 16 13 C 0.12 2.15 3.28 44.70 0.15 2.29 16 14 H 0.13 1.80 7.66 -2.39 -0.02 1.78 16 15 C -0.12 -1.71 6.50 31.65 0.21 -1.50 16 16 C -0.14 -2.16 6.86 30.59 0.21 -1.95 16 17 C 0.52 12.25 8.43 87.90 0.74 12.99 16 18 O -0.58 -19.04 18.03 -3.05 -0.05 -19.09 16 19 N -0.71 -15.11 5.46 -442.96 -2.42 -17.53 16 20 C 0.08 1.86 6.04 86.73 0.52 2.38 16 21 C 0.18 5.45 2.95 46.27 0.14 5.58 16 22 H 0.07 2.20 6.41 -2.39 -0.02 2.19 16 23 N -0.71 -28.89 5.18 -316.92 -1.64 -30.53 16 24 C -0.23 -10.85 9.98 84.03 0.84 -10.01 16 25 H 0.08 3.62 7.83 -2.91 -0.02 3.60 16 26 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 27 N -0.96 -53.02 13.06 21.65 0.28 -52.74 16 28 Si 0.96 41.92 29.55 68.60 2.03 43.95 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 30 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 31 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.30 7.21 -2.38 -0.02 1.28 16 35 H 0.24 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.16 5.10 6.94 -2.91 -0.02 5.08 16 37 H 0.08 1.82 8.04 -2.39 -0.02 1.80 16 38 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 39 H 0.08 1.35 7.90 -2.39 -0.02 1.33 16 40 H 0.13 1.46 7.75 -2.39 -0.02 1.44 16 41 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 43 H 0.41 8.98 8.94 -92.71 -0.83 8.15 16 44 H 0.09 1.78 7.98 -2.39 -0.02 1.76 16 45 H 0.08 2.03 7.46 -2.39 -0.02 2.01 16 46 H 0.38 16.83 7.72 -92.71 -0.72 16.12 16 47 H 0.25 13.59 8.31 -92.70 -0.77 12.82 16 Total: -1.00 -74.26 389.52 0.22 -74.04 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.52 Total: 36.54 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 9.25 Total: 32.09 kcal Atomic # 7 Polarization: -139.01 SS G_CDS: -10.43 Total: -149.43 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.11 Total: -37.18 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -74.26 0.22 -74.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070711776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.341 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds