Wall clock time and date at job start Wed Apr 1 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46506 * 119.99713 * 2 1 4 4 C 1.39046 * 120.00351 * 179.97438 * 2 1 3 5 5 C 1.39300 * 119.91496 * 179.97438 * 4 2 1 6 6 C 1.36524 * 120.27518 * 179.76020 * 5 4 2 7 7 C 1.39857 * 120.07589 * 0.51916 * 6 5 4 8 8 C 1.47372 * 120.09024 * 179.75606 * 7 6 5 9 9 O 1.21619 * 119.99489 * 155.00113 * 8 7 6 10 10 N 1.34774 * 120.00519 * 335.00679 * 8 7 6 11 11 C 1.47884 * 134.34418 * 184.65956 * 10 8 7 12 12 C 1.52375 * 85.58925 * 156.51016 * 11 10 8 13 13 C 1.47891 * 134.33925 * 4.65375 * 10 8 7 14 14 C 1.53659 * 116.38670 * 141.35881 * 12 11 10 15 15 C 1.54607 * 102.73220 * 95.49056 * 14 12 11 16 16 N 1.47143 * 107.36274 * 20.75127 * 15 14 12 17 17 C 1.36934 * 125.58381 * 180.66885 * 16 15 14 18 18 H 1.08003 * 120.00118 * 174.97099 * 17 16 15 19 19 C 1.38809 * 120.00215 * 354.96663 * 17 16 15 20 20 N 1.31621 * 119.99948 * 354.89553 * 19 17 16 21 21 Si 1.86806 * 120.00342 * 174.89910 * 19 17 16 22 22 H 1.48499 * 109.47092 * 94.99886 * 21 19 17 23 23 H 1.48498 * 109.46990 * 215.00177 * 21 19 17 24 24 H 1.48498 * 109.46745 * 334.99718 * 21 19 17 25 25 C 1.47717 * 108.82547 * 0.92987 * 16 15 14 26 26 C 1.40063 * 119.81657 * 359.48779 * 7 6 5 27 27 F 1.35097 * 120.13531 * 180.22961 * 26 7 6 28 28 C 1.38006 * 119.73366 * 0.24888 * 26 7 6 29 29 H 1.08996 * 109.47044 * 269.99634 * 1 2 3 30 30 H 1.09002 * 109.46930 * 29.99771 * 1 2 3 31 31 H 1.09001 * 109.46923 * 149.99722 * 1 2 3 32 32 H 1.08994 * 109.47097 * 270.00124 * 3 2 1 33 33 H 1.08998 * 109.46899 * 30.00398 * 3 2 1 34 34 H 1.09002 * 109.47075 * 149.99674 * 3 2 1 35 35 H 1.08009 * 119.85787 * 0.04833 * 5 4 2 36 36 H 1.08001 * 119.96595 * 180.25096 * 6 5 4 37 37 H 1.09000 * 113.85388 * 42.34740 * 11 10 8 38 38 H 1.08995 * 113.97269 * 270.68821 * 11 10 8 39 39 H 1.09007 * 113.85120 * 89.32295 * 13 10 8 40 40 H 1.08996 * 113.85670 * 317.66212 * 13 10 8 41 41 H 1.08995 * 110.75794 * 337.17787 * 14 12 11 42 42 H 1.09002 * 110.75690 * 213.79843 * 14 12 11 43 43 H 1.08997 * 109.86241 * 261.30789 * 15 14 12 44 44 H 1.08990 * 109.98154 * 140.26157 * 15 14 12 45 45 H 0.97000 * 120.00282 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.39936 * 96.34114 * 25 16 15 47 47 H 1.09002 * 110.40177 * 218.74502 * 25 16 15 48 48 H 1.07999 * 120.04118 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1604 -1.2041 0.0005 5 6 3.5534 -1.2020 0.0000 6 6 4.2435 -2.3799 0.0055 7 6 3.5535 -3.5965 0.0007 8 6 4.2982 -4.8682 0.0011 9 8 3.7800 -5.8761 0.4425 10 7 5.5534 -4.9144 -0.4874 11 6 6.5332 -5.9976 -0.7191 12 6 7.1477 -5.0609 -1.7520 13 6 6.4990 -3.9020 -1.0052 14 6 8.6820 -5.0472 -1.8343 15 6 8.9706 -6.0439 -2.9805 16 7 7.7426 -6.1577 -3.7831 17 6 7.5820 -6.9543 -4.8852 18 1 6.6150 -7.0305 -5.3602 19 6 8.6620 -7.6638 -5.3921 20 7 9.8612 -7.4942 -4.8767 21 14 8.4136 -8.8592 -6.8059 22 1 8.7135 -8.1764 -8.0901 23 1 9.3242 -10.0202 -6.6382 24 1 7.0057 -9.3314 -6.8133 25 6 6.7136 -5.2670 -3.2088 26 6 2.1529 -3.6028 0.0011 27 9 1.4800 -4.7742 0.0012 28 6 1.4631 -2.4075 0.0011 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.3791 1.5835 -1.0276 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1385 0.5139 35 1 4.0896 -0.2644 0.0000 36 1 5.3234 -2.3724 0.0091 37 1 6.0986 -6.9011 -1.1467 38 1 7.1810 -6.1987 0.1341 39 1 7.1354 -3.4603 -0.2383 40 1 6.0375 -3.1605 -1.6573 41 1 9.1221 -5.3951 -0.8998 42 1 9.0464 -4.0515 -2.0872 43 1 9.2346 -7.0173 -2.5672 44 1 9.7856 -5.6718 -3.6012 45 1 10.6160 -7.9897 -5.2311 46 1 6.6967 -4.3146 -3.7387 47 1 5.7337 -5.7427 -3.2495 48 1 0.3831 -2.4066 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072813400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:06 Heat of formation + Delta-G solvation = 36.628720 kcal Electronic energy + Delta-G solvation = -30598.179143 eV Core-core repulsion = 26377.460399 eV Total energy + Delta-G solvation = -4220.718745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.87737 -40.68138 -39.77161 -38.09034 -36.26227 -35.54518 -32.26299 -31.43527 -30.69711 -29.48047 -28.56879 -28.22618 -26.42370 -25.97998 -25.29863 -23.60445 -22.60340 -21.80580 -20.29252 -19.65021 -18.45090 -17.86830 -17.21686 -16.89666 -16.70429 -16.03829 -15.96347 -15.66221 -15.33147 -15.14773 -14.94689 -14.82337 -14.47941 -14.21751 -13.66835 -13.56692 -13.39664 -13.10953 -12.95988 -12.83189 -12.66886 -12.54022 -12.46018 -12.23920 -12.12139 -11.85646 -11.72690 -11.38609 -11.07013 -10.84759 -10.73371 -10.38106 -10.21895 -10.15181 -10.05082 -9.83283 -9.65141 -9.40506 -9.09125 -8.58780 -8.47067 -7.75979 -6.80549 -5.68681 -3.03105 0.80776 1.04177 2.55766 2.87499 2.95318 3.42436 3.48381 3.50508 3.62980 4.09941 4.34309 4.45188 4.49725 4.53301 4.69446 4.70689 4.76510 4.84396 5.00375 5.03378 5.12376 5.16729 5.21914 5.24999 5.26109 5.45148 5.49193 5.54474 5.59791 5.71242 5.72896 5.80249 5.81738 6.01661 6.03217 6.14577 6.20285 6.25283 6.42910 6.49562 6.54128 6.68753 6.71001 6.75283 6.94290 7.53032 7.66673 7.84310 7.90101 8.28148 8.36607 9.24066 9.84132 10.49628 11.42121 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.002405 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.517761 B =11639.577663 C =11780.552890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.628 5.628 3 C 0.088 3.912 4 C 0.263 3.737 5 C -0.216 4.216 6 C -0.012 4.012 7 C -0.223 4.223 8 C 0.582 3.418 9 O -0.540 6.540 10 N -0.636 5.636 11 C 0.132 3.868 12 C -0.103 4.103 13 C 0.108 3.892 14 C -0.130 4.130 15 C 0.175 3.825 16 N -0.604 5.604 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.162 3.838 26 C 0.207 3.793 27 F -0.117 7.117 28 C -0.251 4.251 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.057 0.943 45 H 0.252 0.748 46 H 0.024 0.976 47 H 0.040 0.960 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.471 20.658 12.862 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.337 5.337 3 C -0.054 4.054 4 C 0.158 3.842 5 C -0.238 4.238 6 C -0.031 4.031 7 C -0.229 4.229 8 C 0.373 3.627 9 O -0.418 6.418 10 N -0.371 5.371 11 C 0.010 3.990 12 C -0.105 4.105 13 C -0.015 4.015 14 C -0.169 4.169 15 C 0.050 3.950 16 N -0.330 5.330 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.036 3.964 26 C 0.185 3.815 27 F -0.095 7.095 28 C -0.275 4.275 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.058 0.942 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.969 20.113 13.039 27.743 hybrid contribution -0.226 -0.719 -0.734 1.052 sum -14.194 19.394 12.305 27.001 Atomic orbital electron populations 1.21756 0.79017 1.03179 1.01664 1.46314 1.05512 1.03294 1.78532 1.21753 0.97463 0.84435 1.01782 1.17626 0.91089 0.85241 0.90263 1.20402 0.91744 0.99057 1.12621 1.20911 1.00342 0.90157 0.91728 1.19707 0.92036 0.94613 1.16515 1.17555 0.80319 0.87773 0.77049 1.90817 1.68248 1.36119 1.46610 1.50037 1.11917 1.12285 1.62816 1.22950 0.87082 0.92739 0.96180 1.22475 0.97040 0.94351 0.96652 1.23199 0.88731 0.93622 0.95919 1.22662 0.92425 1.01168 1.00663 1.21243 0.89670 0.95116 0.88933 1.44551 1.09021 1.48336 1.31099 1.19049 0.95184 1.18448 1.02740 0.90542 1.24785 0.95332 1.00722 0.99585 1.69950 0.98585 1.44578 1.43797 0.86117 0.77250 0.80638 0.81888 1.21690 1.21673 1.20649 1.21034 0.93192 0.94092 0.88131 1.17300 0.88405 0.81106 0.94660 1.91579 1.79814 1.45589 1.92549 1.20455 1.00619 0.89712 1.16678 0.92835 0.91086 0.90875 0.92722 0.91182 0.90775 0.84837 0.84231 0.89565 0.89889 0.89408 0.89712 0.91759 0.91613 0.94771 0.92446 0.93813 0.95823 0.94171 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.17 59.85 0.61 1.03 16 2 N -0.63 -4.28 3.39 -187.57 -0.64 -4.92 16 3 C 0.09 0.38 10.17 59.85 0.61 0.99 16 4 C 0.26 2.45 6.55 -83.88 -0.55 1.90 16 5 C -0.22 -1.93 9.13 -39.81 -0.36 -2.29 16 6 C -0.01 -0.13 8.65 -39.59 -0.34 -0.47 16 7 C -0.22 -3.19 5.85 -104.89 -0.61 -3.80 16 8 C 0.58 10.18 7.78 -12.54 -0.10 10.09 16 9 O -0.54 -11.55 16.45 5.26 0.09 -11.46 16 10 N -0.64 -9.99 3.61 -188.23 -0.68 -10.67 16 11 C 0.13 2.19 8.15 -3.60 -0.03 2.16 16 12 C -0.10 -1.68 0.99 -154.85 -0.15 -1.84 16 13 C 0.11 1.35 5.63 -3.60 -0.02 1.33 16 14 C -0.13 -2.18 6.36 -25.54 -0.16 -2.35 16 15 C 0.17 4.07 5.43 -2.85 -0.02 4.05 16 16 N -0.60 -15.16 3.41 -170.50 -0.58 -15.75 16 17 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 18 H 0.08 2.10 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.23 5.46 -17.43 -0.10 -0.32 16 20 N -0.92 -26.88 10.39 55.49 0.58 -26.30 16 21 Si 0.91 22.33 29.56 -169.99 -5.02 17.30 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.16 3.29 6.63 -3.17 -0.02 3.27 16 26 C 0.21 2.92 7.25 -38.98 -0.28 2.64 16 27 F -0.12 -1.94 15.85 2.25 0.04 -1.90 16 28 C -0.25 -2.72 9.17 -39.35 -0.36 -3.08 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 31 H 0.07 0.37 6.17 -51.93 -0.32 0.05 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 34 H 0.07 0.28 6.17 -51.93 -0.32 -0.04 16 35 H 0.13 0.84 6.10 -52.48 -0.32 0.52 16 36 H 0.14 1.26 5.21 -52.49 -0.27 0.98 16 37 H 0.09 1.64 8.12 -51.93 -0.42 1.22 16 38 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.09 0.85 8.02 -51.93 -0.42 0.44 16 40 H 0.08 0.96 7.22 -51.93 -0.38 0.58 16 41 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.03 0.88 7.81 -51.93 -0.41 0.47 16 44 H 0.06 1.50 7.07 -51.93 -0.37 1.13 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 48 H 0.14 1.24 6.11 -52.49 -0.32 0.92 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -35.18 384.56 -9.34 -44.52 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.87 Total: -3.46 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -2.04 Total: 6.84 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -1.32 Total: -57.63 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.18 -9.34 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072813400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.145 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds