Wall clock time and date at job start Wed Apr 1 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46506 * 119.99713 * 2 1 4 4 C 1.39046 * 120.00351 * 179.97438 * 2 1 3 5 5 C 1.39300 * 119.91496 * 179.97438 * 4 2 1 6 6 C 1.36524 * 120.27518 * 179.76020 * 5 4 2 7 7 C 1.39857 * 120.07589 * 0.51916 * 6 5 4 8 8 C 1.47372 * 120.09024 * 179.75606 * 7 6 5 9 9 O 1.21619 * 119.99489 * 155.00113 * 8 7 6 10 10 N 1.34774 * 120.00519 * 335.00679 * 8 7 6 11 11 C 1.47884 * 134.34418 * 184.65956 * 10 8 7 12 12 C 1.52375 * 85.58925 * 156.51016 * 11 10 8 13 13 C 1.47891 * 134.33925 * 4.65375 * 10 8 7 14 14 C 1.53659 * 116.38670 * 141.35881 * 12 11 10 15 15 C 1.54607 * 102.73220 * 95.49056 * 14 12 11 16 16 N 1.47143 * 107.36274 * 20.75127 * 15 14 12 17 17 C 1.36934 * 125.58381 * 180.66885 * 16 15 14 18 18 H 1.08003 * 120.00118 * 174.97099 * 17 16 15 19 19 C 1.38809 * 120.00215 * 354.96663 * 17 16 15 20 20 N 1.31621 * 119.99948 * 354.89553 * 19 17 16 21 21 Si 1.86806 * 120.00342 * 174.89910 * 19 17 16 22 22 H 1.48499 * 109.47092 * 94.99886 * 21 19 17 23 23 H 1.48498 * 109.46990 * 215.00177 * 21 19 17 24 24 H 1.48498 * 109.46745 * 334.99718 * 21 19 17 25 25 C 1.47717 * 108.82547 * 0.92987 * 16 15 14 26 26 C 1.40063 * 119.81657 * 359.48779 * 7 6 5 27 27 F 1.35097 * 120.13531 * 180.22961 * 26 7 6 28 28 C 1.38006 * 119.73366 * 0.24888 * 26 7 6 29 29 H 1.08996 * 109.47044 * 269.99634 * 1 2 3 30 30 H 1.09002 * 109.46930 * 29.99771 * 1 2 3 31 31 H 1.09001 * 109.46923 * 149.99722 * 1 2 3 32 32 H 1.08994 * 109.47097 * 270.00124 * 3 2 1 33 33 H 1.08998 * 109.46899 * 30.00398 * 3 2 1 34 34 H 1.09002 * 109.47075 * 149.99674 * 3 2 1 35 35 H 1.08009 * 119.85787 * 0.04833 * 5 4 2 36 36 H 1.08001 * 119.96595 * 180.25096 * 6 5 4 37 37 H 1.09000 * 113.85388 * 42.34740 * 11 10 8 38 38 H 1.08995 * 113.97269 * 270.68821 * 11 10 8 39 39 H 1.09007 * 113.85120 * 89.32295 * 13 10 8 40 40 H 1.08996 * 113.85670 * 317.66212 * 13 10 8 41 41 H 1.08995 * 110.75794 * 337.17787 * 14 12 11 42 42 H 1.09002 * 110.75690 * 213.79843 * 14 12 11 43 43 H 1.08997 * 109.86241 * 261.30789 * 15 14 12 44 44 H 1.08990 * 109.98154 * 140.26157 * 15 14 12 45 45 H 0.97000 * 120.00282 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.39936 * 96.34114 * 25 16 15 47 47 H 1.09002 * 110.40177 * 218.74502 * 25 16 15 48 48 H 1.07999 * 120.04118 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1604 -1.2041 0.0005 5 6 3.5534 -1.2020 0.0000 6 6 4.2435 -2.3799 0.0055 7 6 3.5535 -3.5965 0.0007 8 6 4.2982 -4.8682 0.0011 9 8 3.7800 -5.8761 0.4425 10 7 5.5534 -4.9144 -0.4874 11 6 6.5332 -5.9976 -0.7191 12 6 7.1477 -5.0609 -1.7520 13 6 6.4990 -3.9020 -1.0052 14 6 8.6820 -5.0472 -1.8343 15 6 8.9706 -6.0439 -2.9805 16 7 7.7426 -6.1577 -3.7831 17 6 7.5820 -6.9543 -4.8852 18 1 6.6150 -7.0305 -5.3602 19 6 8.6620 -7.6638 -5.3921 20 7 9.8612 -7.4942 -4.8767 21 14 8.4136 -8.8592 -6.8059 22 1 8.7135 -8.1764 -8.0901 23 1 9.3242 -10.0202 -6.6382 24 1 7.0057 -9.3314 -6.8133 25 6 6.7136 -5.2670 -3.2088 26 6 2.1529 -3.6028 0.0011 27 9 1.4800 -4.7742 0.0012 28 6 1.4631 -2.4075 0.0011 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.3791 1.5835 -1.0276 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1385 0.5139 35 1 4.0896 -0.2644 0.0000 36 1 5.3234 -2.3724 0.0091 37 1 6.0986 -6.9011 -1.1467 38 1 7.1810 -6.1987 0.1341 39 1 7.1354 -3.4603 -0.2383 40 1 6.0375 -3.1605 -1.6573 41 1 9.1221 -5.3951 -0.8998 42 1 9.0464 -4.0515 -2.0872 43 1 9.2346 -7.0173 -2.5672 44 1 9.7856 -5.6718 -3.6012 45 1 10.6160 -7.9897 -5.2311 46 1 6.6967 -4.3146 -3.7387 47 1 5.7337 -5.7427 -3.2495 48 1 0.3831 -2.4066 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072813400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:02 Heat of formation + Delta-G solvation = 13.788864 kcal Electronic energy + Delta-G solvation = -30599.169554 eV Core-core repulsion = 26377.460399 eV Total energy + Delta-G solvation = -4221.709155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -49.97253 -41.91043 -40.61044 -39.38371 -37.22560 -36.98647 -34.13104 -32.31401 -31.70066 -31.03941 -29.66244 -28.99719 -27.71670 -27.37262 -26.32121 -25.19816 -23.38662 -22.65754 -22.08892 -20.78847 -19.76722 -18.82833 -18.75278 -18.07009 -17.80825 -17.09589 -16.94955 -16.74991 -16.63777 -16.34427 -16.05799 -15.91530 -15.65649 -15.53888 -15.07665 -14.86040 -14.39447 -14.16879 -13.99227 -13.76467 -13.66000 -13.46211 -13.34972 -13.27621 -13.18468 -13.11377 -12.91192 -12.86447 -12.76326 -12.43580 -12.05415 -12.01069 -11.93335 -11.74546 -11.62536 -11.26691 -10.91301 -10.75191 -10.68399 -9.94825 -9.72132 -8.86091 -8.40599 -7.83935 -5.19609 -0.10127 0.24737 1.44127 1.45728 1.54840 1.73781 1.81293 2.04945 2.48709 2.70617 3.24533 3.28641 3.38458 3.41057 3.63676 3.69619 3.82102 4.00567 4.13627 4.15248 4.19926 4.26804 4.38188 4.45245 4.47175 4.53484 4.55832 4.65758 4.68798 4.77389 4.80245 4.84180 4.89997 4.93101 4.95752 5.00434 5.05927 5.09252 5.15327 5.18470 5.26371 5.27620 5.45658 5.62597 5.74548 5.84388 6.16967 6.23446 6.31018 6.69099 7.10316 7.12851 7.79381 8.42716 9.24707 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.002405 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.517761 B =11639.577663 C =11780.552890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.079 3.921 4 C 0.269 3.731 5 C -0.206 4.206 6 C -0.004 4.004 7 C -0.253 4.253 8 C 0.574 3.426 9 O -0.598 6.598 10 N -0.637 5.637 11 C 0.124 3.876 12 C -0.096 4.096 13 C 0.127 3.873 14 C -0.108 4.108 15 C 0.178 3.822 16 N -0.626 5.626 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.062 4.062 20 N -0.945 5.945 21 Si 0.973 3.027 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.276 1.276 25 C 0.159 3.841 26 C 0.174 3.826 27 F -0.145 7.145 28 C -0.254 4.254 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.170 0.830 36 H 0.163 0.837 37 H 0.045 0.955 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.095 0.905 43 H -0.005 1.005 44 H 0.024 0.976 45 H 0.247 0.753 46 H 0.038 0.962 47 H 0.018 0.982 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.519 25.205 13.779 31.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C -0.063 4.063 4 C 0.160 3.840 5 C -0.228 4.228 6 C -0.023 4.023 7 C -0.259 4.259 8 C 0.367 3.633 9 O -0.481 6.481 10 N -0.370 5.370 11 C 0.002 3.998 12 C -0.098 4.098 13 C 0.006 3.994 14 C -0.147 4.147 15 C 0.053 3.947 16 N -0.353 5.353 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.255 4.255 20 N -0.594 5.594 21 Si 0.801 3.199 22 H -0.210 1.210 23 H -0.219 1.219 24 H -0.201 1.201 25 C 0.034 3.966 26 C 0.153 3.847 27 F -0.123 7.123 28 C -0.277 4.277 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.188 0.812 36 H 0.180 0.820 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.014 0.986 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.036 0.964 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.034 24.750 13.952 31.688 hybrid contribution -0.324 -1.988 -1.044 2.268 sum -14.358 22.762 12.908 29.848 Atomic orbital electron populations 1.21951 0.78019 1.04032 1.02451 1.46668 1.06468 1.03295 1.76486 1.22020 0.98067 0.83415 1.02749 1.17809 0.91701 0.85618 0.88851 1.20768 0.91546 0.99792 1.10680 1.21104 1.01323 0.89098 0.90810 1.19613 0.91928 0.94358 1.19998 1.18156 0.80549 0.88375 0.76206 1.90766 1.69506 1.38389 1.49464 1.50094 1.11796 1.12985 1.62139 1.22987 0.87760 0.91867 0.97178 1.22285 0.96704 0.96768 0.94007 1.23456 0.87511 0.92029 0.96433 1.22518 0.92572 1.00638 0.98930 1.21074 0.88278 0.95009 0.90289 1.44846 1.10912 1.48730 1.30766 1.19349 0.95040 1.19056 1.03700 0.91040 1.25558 0.95235 1.02534 1.02214 1.70157 0.98998 1.45299 1.44951 0.85151 0.77129 0.78413 0.79189 1.20970 1.21866 1.20126 1.21161 0.91103 0.93315 0.91039 1.17754 0.88919 0.81240 0.96766 1.91500 1.80345 1.47353 1.93121 1.20567 1.01302 0.89279 1.16578 0.92055 0.88940 0.91408 0.91913 0.89315 0.89776 0.81238 0.81994 0.93604 0.87488 0.84545 0.87562 0.88971 0.88631 0.98629 0.95802 0.94348 0.94395 0.96391 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.17 127.77 1.30 1.81 16 2 N -0.62 -6.06 3.39 -747.33 -2.53 -8.59 16 3 C 0.08 0.29 10.17 127.77 1.30 1.59 16 4 C 0.27 4.17 6.55 38.46 0.25 4.42 16 5 C -0.21 -2.78 9.13 22.12 0.20 -2.58 16 6 C 0.00 -0.07 8.65 22.26 0.19 0.12 16 7 C -0.25 -7.13 5.85 -20.04 -0.12 -7.24 16 8 C 0.57 20.50 7.78 86.65 0.67 21.17 16 9 O -0.60 -27.29 16.45 -4.09 -0.07 -27.36 16 10 N -0.64 -19.37 3.61 -867.69 -3.13 -22.50 16 11 C 0.12 4.11 8.15 85.91 0.70 4.81 16 12 C -0.10 -2.95 0.99 -52.16 -0.05 -3.00 16 13 C 0.13 2.64 5.63 85.90 0.48 3.12 16 14 C -0.11 -3.34 6.36 31.36 0.20 -3.14 16 15 C 0.18 8.45 5.43 86.80 0.47 8.92 16 16 N -0.63 -32.33 3.41 -693.35 -2.36 -34.70 16 17 C -0.24 -14.01 10.27 84.03 0.86 -13.14 16 18 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.06 -3.61 5.46 84.86 0.46 -3.14 16 20 N -0.95 -57.04 10.39 21.65 0.22 -56.82 16 21 Si 0.97 47.12 29.56 68.60 2.03 49.14 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.16 6.48 6.63 86.28 0.57 7.05 16 26 C 0.17 5.06 7.25 22.66 0.16 5.22 16 27 F -0.14 -5.18 15.85 44.97 0.71 -4.46 16 28 C -0.25 -5.26 9.17 22.42 0.21 -5.05 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.09 0.24 8.07 -2.39 -0.02 0.22 16 31 H 0.07 0.54 6.17 -2.39 -0.01 0.52 16 32 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.09 0.05 8.07 -2.39 -0.02 0.03 16 34 H 0.08 0.17 6.17 -2.39 -0.01 0.16 16 35 H 0.17 1.06 6.10 -2.91 -0.02 1.04 16 36 H 0.16 2.06 5.21 -2.91 -0.02 2.04 16 37 H 0.05 1.87 8.12 -2.39 -0.02 1.85 16 38 H 0.11 3.02 8.04 -2.39 -0.02 3.00 16 39 H 0.14 1.69 8.02 -2.38 -0.02 1.67 16 40 H 0.11 1.85 7.22 -2.39 -0.02 1.83 16 41 H 0.09 2.40 7.99 -2.39 -0.02 2.38 16 42 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.00 -0.25 7.81 -2.39 -0.02 -0.27 16 44 H 0.02 1.28 7.07 -2.39 -0.02 1.26 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.02 0.80 8.07 -2.39 -0.02 0.78 16 48 H 0.15 2.59 6.11 -2.91 -0.02 2.58 16 Total: -1.00 -85.19 384.56 3.72 -81.46 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 0.98 Total: 2.88 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.87 Total: 20.94 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -7.81 Total: -122.60 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.07 Total: -27.36 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.71 Total: -4.46 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -85.19 3.72 -81.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072813400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.252 kcal (2) G-P(sol) polarization free energy of solvation -85.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds