Wall clock time and date at job start Wed Apr 1 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 110.99594 * 2 1 4 4 C 1.39193 * 111.00165 * 236.04060 * 2 1 3 5 5 C 1.39144 * 119.93277 * 60.00097 * 4 2 1 6 6 C 1.37654 * 120.09553 * 179.97438 * 5 4 2 7 7 C 1.39776 * 119.96487 * 0.02562 * 6 5 4 8 8 C 1.47531 * 120.05891 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99887 * 6.67004 * 8 7 6 10 10 N 1.34776 * 119.99498 * 186.67363 * 8 7 6 11 11 C 1.47381 * 135.85654 * 5.14573 * 10 8 7 12 12 C 1.52073 * 87.41030 * 154.39143 * 11 10 8 13 13 C 1.47393 * 135.84651 * 185.52049 * 10 8 7 14 14 C 1.53513 * 117.21416 * 267.27825 * 12 11 10 15 15 C 1.54638 * 102.70189 * 262.93258 * 14 12 11 16 16 N 1.47139 * 107.37676 * 339.38127 * 15 14 12 17 17 C 1.36940 * 125.57848 * 179.06993 * 16 15 14 18 18 H 1.08002 * 119.99827 * 186.05824 * 17 16 15 19 19 C 1.38806 * 120.00179 * 6.05349 * 17 16 15 20 20 N 1.31629 * 119.99977 * 353.13985 * 19 17 16 21 21 Si 1.86801 * 120.00457 * 173.13554 * 19 17 16 22 22 H 1.48499 * 109.47427 * 94.98624 * 21 19 17 23 23 H 1.48497 * 109.47143 * 214.99047 * 21 19 17 24 24 H 1.48502 * 109.46684 * 334.98971 * 21 19 17 25 25 C 1.47757 * 108.84073 * 359.09073 * 16 15 14 26 26 C 1.39804 * 119.87949 * 0.02562 * 7 6 5 27 27 C 1.37802 * 119.89845 * 359.70376 * 26 7 6 28 28 F 1.35103 * 119.98246 * 180.29545 * 27 26 7 29 29 H 1.09005 * 109.47337 * 183.95593 * 1 2 3 30 30 H 1.09001 * 109.47072 * 63.95971 * 1 2 3 31 31 H 1.08997 * 109.47406 * 303.95332 * 1 2 3 32 32 H 1.09000 * 109.47701 * 56.04465 * 3 2 1 33 33 H 1.09002 * 109.47311 * 176.04945 * 3 2 1 34 34 H 1.09003 * 109.47150 * 296.03695 * 3 2 1 35 35 H 1.08002 * 119.95301 * 359.97438 * 5 4 2 36 36 H 1.07999 * 120.01836 * 179.97438 * 6 5 4 37 37 H 1.09008 * 113.54707 * 269.00046 * 11 10 8 38 38 H 1.08997 * 113.54940 * 39.68177 * 11 10 8 39 39 H 1.09000 * 113.54757 * 320.31501 * 13 10 8 40 40 H 1.09004 * 113.54695 * 90.93197 * 13 10 8 41 41 H 1.08998 * 110.75991 * 21.23134 * 14 12 11 42 42 H 1.08988 * 110.76706 * 144.62692 * 14 12 11 43 43 H 1.08999 * 109.86552 * 98.83369 * 15 14 12 44 44 H 1.09004 * 109.86237 * 219.93273 * 15 14 12 45 45 H 0.96996 * 120.00000 * 180.02562 * 20 19 17 46 46 H 1.09006 * 110.40423 * 263.50051 * 25 16 15 47 47 H 1.09004 * 110.40456 * 141.08199 * 25 16 15 48 48 H 1.07995 * 120.05542 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9679 -0.7259 -1.0778 5 6 1.6539 -0.3425 -2.3780 6 6 2.1458 -1.0576 -3.4464 7 6 2.9615 -2.1709 -3.2251 8 6 3.4904 -2.9385 -4.3687 9 8 3.3189 -2.5353 -5.5029 10 7 4.1635 -4.0866 -4.1560 11 6 4.4843 -4.9232 -2.9858 12 6 4.5912 -6.1000 -3.9431 13 6 4.9046 -5.0483 -4.9916 14 6 3.3285 -6.9457 -4.1598 15 6 3.5417 -8.1303 -3.1890 16 7 4.9815 -8.2036 -2.8948 17 6 5.5788 -9.1087 -2.0586 18 1 6.6308 -9.0208 -1.8306 19 6 4.8321 -10.1389 -1.5038 20 7 3.5268 -10.1696 -1.6708 21 14 5.6795 -11.4820 -0.5201 22 1 5.6301 -11.1435 0.9249 23 1 4.9870 -12.7754 -0.7496 24 1 7.0953 -11.5947 -0.9539 25 6 5.6774 -7.1405 -3.6490 26 6 3.2754 -2.5556 -1.9182 27 6 2.7846 -1.8326 -0.8527 28 9 3.0917 -2.1993 0.4108 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.4512 -0.9233 31 1 -0.3634 0.5739 0.8524 32 1 1.5897 1.9164 0.8524 33 1 3.0827 1.3433 0.0708 34 1 1.7044 1.8723 -0.9234 35 1 1.0232 0.5174 -2.5492 36 1 1.9009 -0.7592 -4.4550 37 1 5.4295 -4.6620 -2.5097 38 1 3.6627 -5.0114 -2.2751 39 1 4.4339 -5.2408 -5.9556 40 1 5.9673 -4.8214 -5.0783 41 1 2.4351 -6.3819 -3.8912 42 1 3.2702 -7.2961 -5.1902 43 1 2.9838 -7.9597 -2.2683 44 1 3.2118 -9.0573 -3.6578 45 1 3.0050 -10.8893 -1.2828 46 1 6.0844 -7.5382 -4.5788 47 1 6.4702 -6.7015 -3.0433 48 1 3.9057 -3.4150 -1.7440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073462624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:21 Heat of formation + Delta-G solvation = 42.266395 kcal Electronic energy + Delta-G solvation = -30729.446131 eV Core-core repulsion = 26508.971854 eV Total energy + Delta-G solvation = -4220.474277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -48.90710 -41.01462 -39.95571 -38.41855 -36.59026 -35.74603 -32.35064 -31.22515 -30.60455 -29.38437 -28.65296 -28.02644 -26.26876 -26.15848 -25.14135 -23.73784 -22.84122 -21.93947 -20.35818 -19.90409 -18.61971 -17.78779 -17.27702 -16.89417 -16.69016 -16.06048 -16.02557 -15.70077 -15.54735 -14.99909 -14.86580 -14.72430 -14.52131 -14.30095 -13.85271 -13.75809 -13.52857 -13.13330 -12.89601 -12.83841 -12.52121 -12.39052 -12.20115 -12.16270 -12.06876 -11.98283 -11.85961 -11.75180 -11.00429 -10.97539 -10.68976 -10.50195 -10.27878 -10.13195 -9.92243 -9.74129 -9.64221 -9.33910 -9.02146 -8.94174 -8.62704 -8.59375 -6.86456 -5.75137 -3.07968 0.35532 0.88462 2.55500 2.75373 3.31567 3.38965 3.44870 3.46648 3.47294 3.94243 4.25492 4.38777 4.45470 4.56460 4.64457 4.80049 4.87125 4.87279 4.89002 5.05506 5.08054 5.15730 5.25899 5.37718 5.44565 5.46243 5.48574 5.50878 5.55815 5.62913 5.67218 5.71327 5.74705 5.78702 5.85394 6.01532 6.11079 6.19117 6.28317 6.37426 6.41863 6.47560 6.61455 6.66622 6.87270 7.51770 7.59354 7.69145 7.79471 8.07204 8.21866 9.18307 9.78695 10.44236 11.36795 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.002759 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.117921 B =10147.552865 C =11618.157195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.510 5.510 3 C 0.028 3.972 4 C 0.073 3.927 5 C -0.132 4.132 6 C -0.063 4.063 7 C -0.099 4.099 8 C 0.586 3.414 9 O -0.542 6.542 10 N -0.636 5.636 11 C 0.109 3.891 12 C -0.104 4.104 13 C 0.121 3.879 14 C -0.117 4.117 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.154 3.846 26 C -0.126 4.126 27 C 0.120 3.880 28 F -0.122 7.122 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.252 0.748 46 H 0.028 0.972 47 H 0.043 0.957 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 21.883 -0.526 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.231 5.231 3 C -0.118 4.118 4 C -0.023 4.023 5 C -0.152 4.152 6 C -0.082 4.082 7 C -0.102 4.102 8 C 0.376 3.624 9 O -0.421 6.421 10 N -0.370 5.370 11 C -0.013 4.013 12 C -0.106 4.106 13 C -0.001 4.001 14 C -0.155 4.155 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.027 3.973 26 C -0.145 4.145 27 C 0.099 3.901 28 F -0.100 7.100 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.019 21.867 -0.532 22.240 hybrid contribution 0.139 -0.376 0.202 0.449 sum -3.880 21.491 -0.331 21.841 Atomic orbital electron populations 1.22504 0.85065 1.03228 1.01155 1.59355 1.09066 1.14529 1.40167 1.22489 1.01282 0.86906 1.01161 1.18941 0.98178 0.95129 0.90052 1.21443 1.01204 1.00816 0.91730 1.21159 0.94275 0.92797 1.00008 1.19785 1.00671 0.97398 0.92355 1.17522 0.78136 0.78559 0.88164 1.90779 1.59394 1.68446 1.23444 1.49676 1.51657 1.22079 1.13550 1.23117 1.01259 0.86577 0.90345 1.22202 1.00084 0.93393 0.94898 1.22821 0.96475 0.84343 0.96497 1.22475 0.94498 0.97584 1.00992 1.21241 0.85124 0.93143 0.95102 1.44531 1.02565 1.34585 1.51407 1.19026 0.93691 1.03154 1.19945 0.90384 1.24817 0.95709 0.98816 1.00895 1.69972 1.04004 1.33501 1.49143 0.86144 0.78498 0.81780 0.79608 1.21670 1.21667 1.20630 1.21141 0.92561 0.88242 0.95378 1.21895 1.00977 1.00702 0.90963 1.17371 0.98354 0.94681 0.79669 1.91546 1.91104 1.90667 1.36693 0.90777 0.94728 0.90458 0.90463 0.90946 0.94768 0.84709 0.83949 0.88988 0.89488 0.90120 0.89420 0.92081 0.91634 0.93840 0.93451 0.93726 0.95391 0.93917 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.34 60.07 0.56 0.76 16 2 N -0.51 -4.88 4.80 -186.79 -0.90 -5.77 16 3 C 0.03 0.20 9.38 60.06 0.56 0.76 16 4 C 0.07 0.78 4.73 -83.76 -0.40 0.38 16 5 C -0.13 -1.24 8.53 -39.46 -0.34 -1.58 16 6 C -0.06 -0.69 9.58 -39.22 -0.38 -1.07 16 7 C -0.10 -1.27 5.88 -104.95 -0.62 -1.89 16 8 C 0.59 8.84 7.99 -12.47 -0.10 8.74 16 9 O -0.54 -9.61 17.13 5.28 0.09 -9.51 16 10 N -0.64 -9.04 3.68 -186.98 -0.69 -9.73 16 11 C 0.11 1.51 5.42 -7.33 -0.04 1.47 16 12 C -0.10 -1.62 1.06 -155.22 -0.16 -1.79 16 13 C 0.12 1.64 8.03 -7.47 -0.06 1.58 16 14 C -0.12 -2.07 6.41 -25.60 -0.16 -2.23 16 15 C 0.18 4.10 5.40 -2.83 -0.02 4.09 16 16 N -0.60 -14.44 3.41 -170.53 -0.58 -15.02 16 17 C -0.23 -6.12 10.26 -15.06 -0.15 -6.28 16 18 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 20 N -0.92 -26.30 10.35 55.49 0.57 -25.72 16 21 Si 0.91 21.58 29.56 -169.99 -5.02 16.55 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.15 2.83 6.70 -3.22 -0.02 2.81 16 26 C -0.13 -1.56 9.11 -39.16 -0.36 -1.92 16 27 C 0.12 1.49 7.30 -39.32 -0.29 1.20 16 28 F -0.12 -1.68 17.07 2.25 0.04 -1.65 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.22 7.10 -51.93 -0.37 -0.15 16 31 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.21 7.32 -51.93 -0.38 -0.17 16 35 H 0.14 0.95 6.99 -52.49 -0.37 0.58 16 36 H 0.14 1.49 7.66 -52.49 -0.40 1.09 16 37 H 0.09 1.13 8.03 -51.92 -0.42 0.72 16 38 H 0.09 1.25 6.82 -51.93 -0.35 0.89 16 39 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 42 H 0.06 1.10 8.14 -51.94 -0.42 0.68 16 43 H 0.04 1.11 7.55 -51.93 -0.39 0.72 16 44 H 0.05 1.23 7.36 -51.93 -0.38 0.84 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 48 H 0.16 1.89 4.15 -52.49 -0.22 1.68 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -31.75 388.18 -9.74 -41.49 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.04 Total: -1.29 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.06 Total: 4.80 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -1.59 Total: -56.24 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.75 -9.74 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073462624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.757 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds