Wall clock time and date at job start Wed Apr 1 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 110.99594 * 2 1 4 4 C 1.39193 * 111.00165 * 236.04060 * 2 1 3 5 5 C 1.39144 * 119.93277 * 60.00097 * 4 2 1 6 6 C 1.37654 * 120.09553 * 179.97438 * 5 4 2 7 7 C 1.39776 * 119.96487 * 0.02562 * 6 5 4 8 8 C 1.47531 * 120.05891 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99887 * 6.67004 * 8 7 6 10 10 N 1.34776 * 119.99498 * 186.67363 * 8 7 6 11 11 C 1.47381 * 135.85654 * 5.14573 * 10 8 7 12 12 C 1.52073 * 87.41030 * 154.39143 * 11 10 8 13 13 C 1.47393 * 135.84651 * 185.52049 * 10 8 7 14 14 C 1.53513 * 117.21416 * 267.27825 * 12 11 10 15 15 C 1.54638 * 102.70189 * 262.93258 * 14 12 11 16 16 N 1.47139 * 107.37676 * 339.38127 * 15 14 12 17 17 C 1.36940 * 125.57848 * 179.06993 * 16 15 14 18 18 H 1.08002 * 119.99827 * 186.05824 * 17 16 15 19 19 C 1.38806 * 120.00179 * 6.05349 * 17 16 15 20 20 N 1.31629 * 119.99977 * 353.13985 * 19 17 16 21 21 Si 1.86801 * 120.00457 * 173.13554 * 19 17 16 22 22 H 1.48499 * 109.47427 * 94.98624 * 21 19 17 23 23 H 1.48497 * 109.47143 * 214.99047 * 21 19 17 24 24 H 1.48502 * 109.46684 * 334.98971 * 21 19 17 25 25 C 1.47757 * 108.84073 * 359.09073 * 16 15 14 26 26 C 1.39804 * 119.87949 * 0.02562 * 7 6 5 27 27 C 1.37802 * 119.89845 * 359.70376 * 26 7 6 28 28 F 1.35103 * 119.98246 * 180.29545 * 27 26 7 29 29 H 1.09005 * 109.47337 * 183.95593 * 1 2 3 30 30 H 1.09001 * 109.47072 * 63.95971 * 1 2 3 31 31 H 1.08997 * 109.47406 * 303.95332 * 1 2 3 32 32 H 1.09000 * 109.47701 * 56.04465 * 3 2 1 33 33 H 1.09002 * 109.47311 * 176.04945 * 3 2 1 34 34 H 1.09003 * 109.47150 * 296.03695 * 3 2 1 35 35 H 1.08002 * 119.95301 * 359.97438 * 5 4 2 36 36 H 1.07999 * 120.01836 * 179.97438 * 6 5 4 37 37 H 1.09008 * 113.54707 * 269.00046 * 11 10 8 38 38 H 1.08997 * 113.54940 * 39.68177 * 11 10 8 39 39 H 1.09000 * 113.54757 * 320.31501 * 13 10 8 40 40 H 1.09004 * 113.54695 * 90.93197 * 13 10 8 41 41 H 1.08998 * 110.75991 * 21.23134 * 14 12 11 42 42 H 1.08988 * 110.76706 * 144.62692 * 14 12 11 43 43 H 1.08999 * 109.86552 * 98.83369 * 15 14 12 44 44 H 1.09004 * 109.86237 * 219.93273 * 15 14 12 45 45 H 0.96996 * 120.00000 * 180.02562 * 20 19 17 46 46 H 1.09006 * 110.40423 * 263.50051 * 25 16 15 47 47 H 1.09004 * 110.40456 * 141.08199 * 25 16 15 48 48 H 1.07995 * 120.05542 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9679 -0.7259 -1.0778 5 6 1.6539 -0.3425 -2.3780 6 6 2.1458 -1.0576 -3.4464 7 6 2.9615 -2.1709 -3.2251 8 6 3.4904 -2.9385 -4.3687 9 8 3.3189 -2.5353 -5.5029 10 7 4.1635 -4.0866 -4.1560 11 6 4.4843 -4.9232 -2.9858 12 6 4.5912 -6.1000 -3.9431 13 6 4.9046 -5.0483 -4.9916 14 6 3.3285 -6.9457 -4.1598 15 6 3.5417 -8.1303 -3.1890 16 7 4.9815 -8.2036 -2.8948 17 6 5.5788 -9.1087 -2.0586 18 1 6.6308 -9.0208 -1.8306 19 6 4.8321 -10.1389 -1.5038 20 7 3.5268 -10.1696 -1.6708 21 14 5.6795 -11.4820 -0.5201 22 1 5.6301 -11.1435 0.9249 23 1 4.9870 -12.7754 -0.7496 24 1 7.0953 -11.5947 -0.9539 25 6 5.6774 -7.1405 -3.6490 26 6 3.2754 -2.5556 -1.9182 27 6 2.7846 -1.8326 -0.8527 28 9 3.0917 -2.1993 0.4108 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.4512 -0.9233 31 1 -0.3634 0.5739 0.8524 32 1 1.5897 1.9164 0.8524 33 1 3.0827 1.3433 0.0708 34 1 1.7044 1.8723 -0.9234 35 1 1.0232 0.5174 -2.5492 36 1 1.9009 -0.7592 -4.4550 37 1 5.4295 -4.6620 -2.5097 38 1 3.6627 -5.0114 -2.2751 39 1 4.4339 -5.2408 -5.9556 40 1 5.9673 -4.8214 -5.0783 41 1 2.4351 -6.3819 -3.8912 42 1 3.2702 -7.2961 -5.1902 43 1 2.9838 -7.9597 -2.2683 44 1 3.2118 -9.0573 -3.6578 45 1 3.0050 -10.8893 -1.2828 46 1 6.0844 -7.5382 -4.5788 47 1 6.4702 -6.7015 -3.0433 48 1 3.9057 -3.4150 -1.7440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073462624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:18 Heat of formation + Delta-G solvation = 23.129619 kcal Electronic energy + Delta-G solvation = -30730.275964 eV Core-core repulsion = 26508.971854 eV Total energy + Delta-G solvation = -4221.304109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -49.89547 -42.18197 -40.86951 -39.56924 -37.45343 -37.34450 -34.13695 -32.27491 -31.56789 -30.95948 -30.04464 -28.57023 -27.61974 -27.34005 -26.26500 -25.28015 -23.72231 -22.81121 -22.13134 -21.00809 -19.93850 -18.81856 -18.69267 -18.13060 -17.68919 -17.05369 -16.99078 -16.89095 -16.67355 -16.60904 -15.97601 -15.73549 -15.65649 -15.42199 -15.26261 -14.93078 -14.51304 -14.23415 -13.95533 -13.83688 -13.72321 -13.60274 -13.45263 -13.33822 -13.03321 -12.96459 -12.85496 -12.78370 -12.68231 -12.58912 -12.22507 -12.02810 -11.96160 -11.82571 -11.67242 -11.23435 -10.97903 -10.64004 -10.20485 -9.94808 -9.70315 -9.63108 -8.83475 -7.81788 -5.15158 -0.55150 0.01212 1.49502 1.50439 1.54047 1.59497 1.65266 2.50493 2.53132 2.62202 3.02024 3.20131 3.34178 3.42574 3.51520 3.58985 3.81373 3.90189 3.97442 4.03283 4.13914 4.21122 4.27786 4.35501 4.44493 4.45506 4.53153 4.58102 4.60386 4.64603 4.67436 4.69193 4.83174 4.85852 4.91913 4.93609 4.95530 5.02035 5.03982 5.14179 5.16602 5.21404 5.43703 5.52198 5.68764 5.79851 5.80356 6.13319 6.23463 6.54612 6.93340 7.14320 7.82198 8.46637 9.29196 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.002759 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.117921 B =10147.552865 C =11618.157195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.027 3.973 4 C 0.082 3.918 5 C -0.119 4.119 6 C -0.058 4.058 7 C -0.116 4.116 8 C 0.585 3.415 9 O -0.573 6.573 10 N -0.636 5.636 11 C 0.114 3.886 12 C -0.099 4.099 13 C 0.129 3.871 14 C -0.103 4.103 15 C 0.189 3.811 16 N -0.625 5.625 17 C -0.234 4.234 18 H 0.087 0.913 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.972 3.028 22 H -0.289 1.289 23 H -0.299 1.299 24 H -0.267 1.267 25 C 0.152 3.848 26 C -0.125 4.125 27 C 0.096 3.904 28 F -0.136 7.136 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.166 0.834 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.007 0.993 44 H 0.008 0.992 45 H 0.244 0.756 46 H 0.038 0.962 47 H 0.059 0.941 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 24.347 -0.796 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.253 5.253 3 C -0.119 4.119 4 C -0.014 4.014 5 C -0.139 4.139 6 C -0.077 4.077 7 C -0.119 4.119 8 C 0.377 3.623 9 O -0.454 6.454 10 N -0.369 5.369 11 C -0.007 4.007 12 C -0.101 4.101 13 C 0.007 3.993 14 C -0.141 4.141 15 C 0.064 3.936 16 N -0.351 5.351 17 C -0.363 4.363 18 H 0.105 0.895 19 C -0.260 4.260 20 N -0.600 5.600 21 Si 0.801 3.199 22 H -0.216 1.216 23 H -0.226 1.226 24 H -0.191 1.191 25 C 0.026 3.974 26 C -0.144 4.144 27 C 0.076 3.924 28 F -0.114 7.114 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.184 0.816 36 H 0.167 0.833 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.349 24.357 -0.808 24.599 hybrid contribution -0.071 -1.077 0.313 1.124 sum -3.420 23.279 -0.495 23.534 Atomic orbital electron populations 1.22565 0.83776 1.02944 1.02750 1.59384 1.10309 1.15799 1.39800 1.22558 1.00830 0.85789 1.02697 1.19106 0.96886 0.94308 0.91066 1.21678 1.00635 1.01100 0.90507 1.21321 0.93466 0.92101 1.00858 1.19690 1.02233 0.98385 0.91628 1.17797 0.77661 0.78549 0.88281 1.90757 1.60689 1.69309 1.24656 1.49650 1.51505 1.21999 1.13719 1.23150 1.02134 0.85507 0.89954 1.22017 0.97668 0.93261 0.97130 1.22861 0.98041 0.82762 0.95637 1.22261 0.96034 0.95848 0.99939 1.20918 0.84723 0.93621 0.94333 1.44814 1.03325 1.35499 1.51509 1.19451 0.94139 1.03314 1.19420 0.89501 1.25617 0.96326 1.01207 1.02845 1.70194 1.05299 1.33865 1.50680 0.85148 0.78007 0.78644 0.78074 1.21643 1.22559 1.19129 1.21321 0.93377 0.87451 0.95203 1.21806 1.01023 1.00662 0.90929 1.17612 0.99781 0.95907 0.79145 1.91504 1.91431 1.90967 1.37499 0.92069 0.93147 0.88829 0.88877 0.91800 0.93247 0.81642 0.83279 0.86803 0.90226 0.89890 0.86672 0.91442 0.90567 0.97473 0.97406 0.94630 0.94425 0.92292 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.34 127.69 1.19 1.51 16 2 N -0.53 -9.08 4.80 -744.88 -3.57 -12.66 16 3 C 0.03 0.32 9.38 127.69 1.20 1.51 16 4 C 0.08 1.62 4.73 38.46 0.18 1.81 16 5 C -0.12 -1.94 8.53 22.35 0.19 -1.75 16 6 C -0.06 -1.16 9.58 22.50 0.22 -0.95 16 7 C -0.12 -2.86 5.88 -20.08 -0.12 -2.98 16 8 C 0.59 16.94 7.99 86.69 0.69 17.63 16 9 O -0.57 -19.64 17.13 -4.01 -0.07 -19.71 16 10 N -0.64 -16.98 3.68 -863.75 -3.17 -20.16 16 11 C 0.11 3.01 5.42 83.77 0.45 3.46 16 12 C -0.10 -2.94 1.06 -52.62 -0.06 -2.99 16 13 C 0.13 3.16 8.03 83.67 0.67 3.83 16 14 C -0.10 -3.60 6.41 31.32 0.20 -3.40 16 15 C 0.19 9.02 5.40 86.82 0.47 9.49 16 16 N -0.62 -30.06 3.41 -693.43 -2.36 -32.42 16 17 C -0.23 -12.53 10.26 84.03 0.86 -11.66 16 18 H 0.09 4.38 7.84 -2.91 -0.02 4.36 16 19 C -0.07 -3.74 5.48 84.86 0.47 -3.27 16 20 N -0.95 -56.64 10.35 21.65 0.22 -56.42 16 21 Si 0.97 45.04 29.56 68.60 2.03 47.07 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 C 0.15 5.36 6.70 86.23 0.58 5.93 16 26 C -0.12 -3.02 9.11 22.55 0.21 -2.81 16 27 C 0.10 2.33 7.30 22.44 0.16 2.50 16 28 F -0.14 -3.76 17.07 44.97 0.77 -2.99 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.47 7.10 -2.39 -0.02 0.45 16 31 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.43 7.32 -2.39 -0.02 0.41 16 35 H 0.17 1.65 6.99 -2.91 -0.02 1.63 16 36 H 0.15 2.81 7.66 -2.91 -0.02 2.79 16 37 H 0.11 2.54 8.03 -2.38 -0.02 2.52 16 38 H 0.08 2.25 6.82 -2.39 -0.02 2.23 16 39 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 40 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 42 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.01 0.38 7.55 -2.39 -0.02 0.36 16 44 H 0.01 0.42 7.36 -2.39 -0.02 0.40 16 45 H 0.24 14.29 8.31 -92.71 -0.77 13.51 16 46 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 47 H 0.06 1.91 8.00 -2.38 -0.02 1.89 16 48 H 0.15 3.66 4.15 -2.91 -0.01 3.65 16 Total: -1.00 -70.80 388.18 2.38 -68.42 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.97 Total: 11.02 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 7.57 Total: 17.85 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -8.89 Total: -121.66 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.07 Total: -19.71 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.77 Total: -2.99 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.80 2.38 -68.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073462624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.548 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds