Wall clock time and date at job start Wed Apr 1 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99990 * 2 1 4 4 C 1.39052 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.39299 * 119.90487 * 180.02562 * 4 2 1 6 6 C 1.36536 * 120.27000 * 179.71751 * 5 4 2 7 7 C 1.39861 * 120.07433 * 0.51724 * 6 5 4 8 8 C 1.47370 * 120.09213 * 179.76318 * 7 6 5 9 9 O 1.21605 * 120.00198 * 144.02536 * 8 7 6 10 10 N 1.34779 * 119.99793 * 324.30046 * 8 7 6 11 11 C 1.47398 * 125.58957 * 3.74663 * 10 8 7 12 12 C 1.54861 * 104.81100 * 204.60802 * 11 10 8 13 13 C 1.55127 * 101.77150 * 322.81254 * 12 11 10 14 14 H 1.09005 * 113.45847 * 158.33861 * 13 12 11 15 15 C 1.54038 * 108.25783 * 285.18305 * 13 12 11 16 16 N 1.46708 * 106.82485 * 135.81249 * 15 13 12 17 17 C 1.36942 * 125.32018 * 161.79705 * 16 15 13 18 18 H 1.08002 * 119.99985 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99825 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99830 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99705 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47295 * 60.00374 * 21 19 17 23 23 H 1.48501 * 109.46633 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47296 * 300.00236 * 21 19 17 25 25 C 1.46628 * 109.35478 * 341.81764 * 16 15 13 26 26 C 1.46733 * 125.58929 * 183.43718 * 10 8 7 27 27 H 1.08997 * 111.32776 * 56.12470 * 26 10 8 28 28 C 1.40071 * 119.81480 * 359.48397 * 7 6 5 29 29 F 1.35097 * 120.13137 * 180.22822 * 28 7 6 30 30 C 1.38002 * 119.73225 * 0.25743 * 28 7 6 31 31 H 1.08994 * 109.47699 * 240.00259 * 1 2 3 32 32 H 1.09007 * 109.47091 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.47077 * 119.99785 * 1 2 3 34 34 H 1.09001 * 109.46966 * 269.99990 * 3 2 1 35 35 H 1.09002 * 109.47211 * 29.99510 * 3 2 1 36 36 H 1.08996 * 109.47337 * 149.99747 * 3 2 1 37 37 H 1.08003 * 119.86846 * 359.97438 * 5 4 2 38 38 H 1.07998 * 119.96662 * 180.25583 * 6 5 4 39 39 H 1.09006 * 110.37140 * 323.43801 * 11 10 8 40 40 H 1.08996 * 110.37717 * 85.77354 * 11 10 8 41 41 H 1.08994 * 110.96760 * 80.93528 * 12 11 10 42 42 H 1.09000 * 110.96257 * 204.69418 * 12 11 10 43 43 H 1.09004 * 109.98932 * 255.14935 * 15 13 12 44 44 H 1.09000 * 109.99156 * 16.46821 * 15 13 12 45 45 H 0.97006 * 119.99696 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.75482 * 120.93446 * 25 16 15 47 47 H 1.09001 * 109.75626 * 241.62834 * 25 16 15 48 48 H 1.08003 * 120.03499 * 179.97438 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 3.5532 -1.2020 0.0011 6 6 4.2434 -2.3800 0.0074 7 6 3.5534 -3.5966 0.0025 8 6 4.2980 -4.8684 0.0041 9 8 3.8669 -5.8246 0.6193 10 7 5.4596 -4.9700 -0.6719 11 6 6.1354 -3.8719 -1.3861 12 6 6.9984 -4.5727 -2.4641 13 6 7.4799 -5.8397 -1.7095 14 1 7.7861 -6.6492 -2.3722 15 6 8.5737 -5.4194 -0.7097 16 7 8.2853 -6.1119 0.5511 17 6 9.1775 -6.3006 1.5728 18 1 10.1862 -5.9249 1.4851 19 6 8.7849 -6.9738 2.7215 20 7 7.5554 -7.4311 2.8285 21 14 10.0016 -7.2306 4.1155 22 1 10.4684 -5.9121 4.6142 23 1 9.3404 -7.9721 5.2192 24 1 11.1633 -8.0122 3.6208 25 6 6.8927 -6.5707 0.5460 26 6 6.2620 -6.1904 -0.8121 27 1 5.6756 -7.0035 -1.2400 28 6 2.1527 -3.6028 0.0020 29 9 1.4797 -4.7742 0.0019 30 6 1.4630 -2.4075 0.0010 31 1 -0.3634 -0.5137 0.8899 32 1 -0.3634 1.0277 -0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 2.3792 1.5834 -1.0277 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5138 37 1 4.0896 -0.2645 0.0007 38 1 5.3233 -2.3725 0.0120 39 1 5.4017 -3.2159 -1.8548 40 1 6.7682 -3.3069 -0.7018 41 1 6.3962 -4.8409 -3.3321 42 1 7.8426 -3.9475 -2.7549 43 1 9.5538 -5.7173 -1.0826 44 1 8.5448 -4.3405 -0.5574 45 1 7.2811 -7.9019 3.6311 46 1 6.8612 -7.6537 0.6650 47 1 6.3450 -6.0947 1.3594 48 1 0.3829 -2.4066 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075880009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:26 Heat of formation + Delta-G solvation = 8.405748 kcal Electronic energy + Delta-G solvation = -31478.559890 eV Core-core repulsion = 27256.617305 eV Total energy + Delta-G solvation = -4221.942584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -48.74605 -40.37769 -39.48307 -37.67037 -36.11607 -34.70813 -32.22116 -31.16617 -30.76568 -30.36557 -28.62109 -28.37156 -26.47797 -25.49202 -24.68328 -22.92696 -22.52866 -21.45599 -20.64415 -19.72206 -18.83236 -17.70878 -17.16400 -16.69841 -16.56993 -16.09169 -15.75758 -15.65420 -15.19152 -14.90265 -14.77746 -14.54879 -14.16463 -13.90771 -13.73337 -13.34215 -13.18292 -13.05600 -12.79203 -12.74260 -12.69125 -12.42078 -12.31096 -12.13343 -11.99695 -11.75815 -11.50483 -11.24062 -10.99145 -10.90622 -10.64467 -10.43157 -10.19268 -10.10265 -9.95407 -9.77150 -9.61795 -9.31418 -8.93365 -8.50614 -8.06812 -7.61523 -6.72853 -5.58945 -2.95519 1.01360 1.19587 2.67983 3.12078 3.42300 3.46246 3.49744 3.52732 3.78383 4.25073 4.54884 4.56013 4.58433 4.68951 4.81382 4.84847 4.86570 4.96320 5.11972 5.16995 5.19894 5.22573 5.29427 5.32465 5.39132 5.56322 5.57690 5.65730 5.72152 5.79997 5.83668 5.92047 5.97520 6.01829 6.08210 6.22677 6.27365 6.40465 6.53929 6.58076 6.65660 6.72204 6.82025 6.94611 7.08095 7.64996 7.75595 7.99751 8.07917 8.38504 8.71898 9.31873 9.92998 10.56867 11.50381 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002996 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.200701 B = 9344.658110 C = 9617.664230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.630 5.630 3 C 0.089 3.911 4 C 0.257 3.743 5 C -0.214 4.214 6 C -0.015 4.015 7 C -0.215 4.215 8 C 0.574 3.426 9 O -0.520 6.520 10 N -0.598 5.598 11 C 0.098 3.902 12 C -0.125 4.125 13 C -0.111 4.111 14 H 0.096 0.904 15 C 0.143 3.857 16 N -0.602 5.602 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.913 5.913 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.178 3.822 26 C 0.115 3.885 27 H 0.079 0.921 28 C 0.201 3.799 29 F -0.120 7.120 30 C -0.246 4.246 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.034 0.966 44 H 0.017 0.983 45 H 0.254 0.746 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.972 18.825 -12.086 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.339 5.339 3 C -0.053 4.053 4 C 0.153 3.847 5 C -0.236 4.236 6 C -0.034 4.034 7 C -0.221 4.221 8 C 0.363 3.637 9 O -0.396 6.396 10 N -0.332 5.332 11 C -0.025 4.025 12 C -0.164 4.164 13 C -0.131 4.131 14 H 0.115 0.885 15 C 0.017 3.983 16 N -0.329 5.329 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.741 3.259 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.053 3.947 26 C 0.011 3.989 27 H 0.097 0.903 28 C 0.179 3.821 29 F -0.099 7.099 30 C -0.270 4.270 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.435 18.342 -11.476 24.955 hybrid contribution 0.456 -0.238 0.841 0.986 sum -11.979 18.104 -10.635 24.173 Atomic orbital electron populations 1.21696 0.79116 1.02690 1.01720 1.46271 1.05383 1.03268 1.79002 1.21760 0.97607 0.84437 1.01542 1.17576 0.91026 0.85160 0.90954 1.20397 0.91706 0.98980 1.12557 1.20973 1.00624 0.90074 0.91713 1.19783 0.92082 0.94920 1.15302 1.17469 0.79833 0.87288 0.79118 1.90860 1.67911 1.39270 1.41568 1.48220 1.21365 1.11592 1.52052 1.22521 0.95461 0.90577 0.93976 1.22781 0.99311 0.97162 0.97101 1.23156 0.95974 0.97282 0.96639 0.88542 1.21289 0.95140 0.95163 0.86717 1.44202 1.09012 1.65344 1.14346 1.18941 0.92337 1.31367 0.93682 0.90537 1.24850 0.96627 1.00551 0.98267 1.69990 1.15960 1.42048 1.27990 0.86227 0.80020 0.77686 0.81946 1.21256 1.21627 1.21202 1.21390 0.83965 0.98960 0.90433 1.22819 0.90517 0.86246 0.99280 0.90264 1.17268 0.88357 0.81044 0.95382 1.91562 1.79865 1.45702 1.92722 1.20371 1.00418 0.89699 1.16516 0.92354 0.90628 0.92394 0.92956 0.91288 0.90790 0.84960 0.84021 0.90826 0.91077 0.91075 0.89973 0.94808 0.96531 0.93589 0.93167 0.92595 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 9.38 59.85 0.56 1.08 16 2 N -0.63 -5.00 3.39 -187.57 -0.64 -5.64 16 3 C 0.09 0.48 10.14 59.85 0.61 1.08 16 4 C 0.26 2.76 6.55 -83.88 -0.55 2.21 16 5 C -0.21 -2.29 9.13 -39.80 -0.36 -2.65 16 6 C -0.01 -0.19 7.83 -39.59 -0.31 -0.50 16 7 C -0.21 -3.56 5.53 -104.89 -0.58 -4.14 16 8 C 0.57 11.82 7.04 -12.54 -0.09 11.73 16 9 O -0.52 -13.07 15.90 5.27 0.08 -12.99 16 10 N -0.60 -11.21 2.98 -163.09 -0.49 -11.69 16 11 C 0.10 1.37 4.66 -2.57 -0.01 1.36 16 12 C -0.13 -1.59 6.34 -24.62 -0.16 -1.75 16 13 C -0.11 -1.87 4.28 -87.74 -0.38 -2.24 16 14 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 15 C 0.14 2.90 6.46 -3.39 -0.02 2.88 16 16 N -0.60 -15.79 3.38 -171.39 -0.58 -16.37 16 17 C -0.24 -6.72 10.25 -15.06 -0.15 -6.88 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 20 N -0.91 -28.52 10.24 55.49 0.57 -27.95 16 21 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.18 4.68 4.91 -3.19 -0.02 4.66 16 26 C 0.11 2.35 3.68 -65.80 -0.24 2.11 16 27 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 28 C 0.20 3.15 7.24 -38.98 -0.28 2.87 16 29 F -0.12 -2.14 16.13 2.25 0.04 -2.11 16 30 C -0.25 -3.01 9.27 -39.36 -0.36 -3.38 16 31 H 0.06 0.35 7.93 -51.93 -0.41 -0.07 16 32 H 0.07 0.27 7.80 -51.92 -0.40 -0.13 16 33 H 0.06 0.32 7.93 -51.93 -0.41 -0.09 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 36 H 0.07 0.39 6.17 -51.93 -0.32 0.07 16 37 H 0.13 1.06 6.10 -52.48 -0.32 0.74 16 38 H 0.14 1.76 5.40 -52.49 -0.28 1.48 16 39 H 0.07 0.86 6.56 -51.93 -0.34 0.52 16 40 H 0.07 1.02 6.33 -51.93 -0.33 0.69 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.87 8.07 -51.93 -0.42 0.46 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.02 0.33 6.59 -51.93 -0.34 -0.01 16 45 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.05 1.49 7.33 -51.93 -0.38 1.10 16 47 H 0.06 1.71 6.69 -51.93 -0.35 1.36 16 48 H 0.14 1.39 6.70 -52.48 -0.35 1.04 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -36.93 375.41 -9.55 -46.48 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.73 Total: -1.41 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -2.44 Total: 8.19 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -1.13 Total: -61.66 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.93 -9.55 -46.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075880009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.887 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds