Wall clock time and date at job start Wed Apr 1 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99990 * 2 1 4 4 C 1.39052 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.39299 * 119.90487 * 180.02562 * 4 2 1 6 6 C 1.36536 * 120.27000 * 179.71751 * 5 4 2 7 7 C 1.39861 * 120.07433 * 0.51724 * 6 5 4 8 8 C 1.47370 * 120.09213 * 179.76318 * 7 6 5 9 9 O 1.21605 * 120.00198 * 144.02536 * 8 7 6 10 10 N 1.34779 * 119.99793 * 324.30046 * 8 7 6 11 11 C 1.47398 * 125.58957 * 3.74663 * 10 8 7 12 12 C 1.54861 * 104.81100 * 204.60802 * 11 10 8 13 13 C 1.55127 * 101.77150 * 322.81254 * 12 11 10 14 14 H 1.09005 * 113.45847 * 158.33861 * 13 12 11 15 15 C 1.54038 * 108.25783 * 285.18305 * 13 12 11 16 16 N 1.46708 * 106.82485 * 135.81249 * 15 13 12 17 17 C 1.36942 * 125.32018 * 161.79705 * 16 15 13 18 18 H 1.08002 * 119.99985 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99825 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99830 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99705 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47295 * 60.00374 * 21 19 17 23 23 H 1.48501 * 109.46633 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47296 * 300.00236 * 21 19 17 25 25 C 1.46628 * 109.35478 * 341.81764 * 16 15 13 26 26 C 1.46733 * 125.58929 * 183.43718 * 10 8 7 27 27 H 1.08997 * 111.32776 * 56.12470 * 26 10 8 28 28 C 1.40071 * 119.81480 * 359.48397 * 7 6 5 29 29 F 1.35097 * 120.13137 * 180.22822 * 28 7 6 30 30 C 1.38002 * 119.73225 * 0.25743 * 28 7 6 31 31 H 1.08994 * 109.47699 * 240.00259 * 1 2 3 32 32 H 1.09007 * 109.47091 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.47077 * 119.99785 * 1 2 3 34 34 H 1.09001 * 109.46966 * 269.99990 * 3 2 1 35 35 H 1.09002 * 109.47211 * 29.99510 * 3 2 1 36 36 H 1.08996 * 109.47337 * 149.99747 * 3 2 1 37 37 H 1.08003 * 119.86846 * 359.97438 * 5 4 2 38 38 H 1.07998 * 119.96662 * 180.25583 * 6 5 4 39 39 H 1.09006 * 110.37140 * 323.43801 * 11 10 8 40 40 H 1.08996 * 110.37717 * 85.77354 * 11 10 8 41 41 H 1.08994 * 110.96760 * 80.93528 * 12 11 10 42 42 H 1.09000 * 110.96257 * 204.69418 * 12 11 10 43 43 H 1.09004 * 109.98932 * 255.14935 * 15 13 12 44 44 H 1.09000 * 109.99156 * 16.46821 * 15 13 12 45 45 H 0.97006 * 119.99696 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.75482 * 120.93446 * 25 16 15 47 47 H 1.09001 * 109.75626 * 241.62834 * 25 16 15 48 48 H 1.08003 * 120.03499 * 179.97438 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 3.5532 -1.2020 0.0011 6 6 4.2434 -2.3800 0.0074 7 6 3.5534 -3.5966 0.0025 8 6 4.2980 -4.8684 0.0041 9 8 3.8669 -5.8246 0.6193 10 7 5.4596 -4.9700 -0.6719 11 6 6.1354 -3.8719 -1.3861 12 6 6.9984 -4.5727 -2.4641 13 6 7.4799 -5.8397 -1.7095 14 1 7.7861 -6.6492 -2.3722 15 6 8.5737 -5.4194 -0.7097 16 7 8.2853 -6.1119 0.5511 17 6 9.1775 -6.3006 1.5728 18 1 10.1862 -5.9249 1.4851 19 6 8.7849 -6.9738 2.7215 20 7 7.5554 -7.4311 2.8285 21 14 10.0016 -7.2306 4.1155 22 1 10.4684 -5.9121 4.6142 23 1 9.3404 -7.9721 5.2192 24 1 11.1633 -8.0122 3.6208 25 6 6.8927 -6.5707 0.5460 26 6 6.2620 -6.1904 -0.8121 27 1 5.6756 -7.0035 -1.2400 28 6 2.1527 -3.6028 0.0020 29 9 1.4797 -4.7742 0.0019 30 6 1.4630 -2.4075 0.0010 31 1 -0.3634 -0.5137 0.8899 32 1 -0.3634 1.0277 -0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 2.3792 1.5834 -1.0277 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5138 37 1 4.0896 -0.2645 0.0007 38 1 5.3233 -2.3725 0.0120 39 1 5.4017 -3.2159 -1.8548 40 1 6.7682 -3.3069 -0.7018 41 1 6.3962 -4.8409 -3.3321 42 1 7.8426 -3.9475 -2.7549 43 1 9.5538 -5.7173 -1.0826 44 1 8.5448 -4.3405 -0.5574 45 1 7.2811 -7.9019 3.6311 46 1 6.8612 -7.6537 0.6650 47 1 6.3450 -6.0947 1.3594 48 1 0.3829 -2.4066 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075880009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:25 Heat of formation + Delta-G solvation = -16.702283 kcal Electronic energy + Delta-G solvation = -31479.648656 eV Core-core repulsion = 27256.617305 eV Total energy + Delta-G solvation = -4223.031350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.99052 -41.75060 -40.51822 -39.17822 -37.05955 -36.48933 -33.99376 -32.46133 -32.14554 -31.45530 -30.20813 -28.96773 -28.02064 -26.65815 -26.41740 -24.14206 -23.58923 -22.67292 -22.18539 -21.10514 -20.34614 -18.92006 -18.64887 -18.20663 -17.71206 -17.42362 -16.88097 -16.74306 -16.70459 -16.04203 -15.90158 -15.69363 -15.60665 -15.49884 -15.08148 -14.70784 -14.63504 -14.18373 -13.95355 -13.92790 -13.60513 -13.42139 -13.32722 -13.21498 -13.17283 -12.99058 -12.93062 -12.80394 -12.72988 -12.40850 -12.19035 -12.05618 -11.84662 -11.78808 -11.56820 -11.39606 -10.99386 -10.80287 -10.69332 -9.95463 -9.61901 -8.89535 -8.41167 -7.82358 -5.21888 -0.07324 0.22556 1.41715 1.46961 1.53664 1.78716 1.99942 2.07353 2.48790 2.65536 3.23327 3.33662 3.38808 3.57441 3.64989 3.79933 3.81963 4.00015 4.01710 4.11731 4.24023 4.25940 4.40998 4.44915 4.52604 4.53890 4.57156 4.58293 4.72107 4.78033 4.82769 4.90883 4.91696 4.93475 4.95523 5.04330 5.09795 5.13308 5.18774 5.27048 5.30853 5.42705 5.45461 5.59358 5.65716 5.81096 6.18558 6.18986 6.30185 6.59583 7.07456 7.20514 7.79669 8.42253 9.25604 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002996 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.200701 B = 9344.658110 C = 9617.664230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.623 5.623 3 C 0.079 3.921 4 C 0.268 3.732 5 C -0.201 4.201 6 C -0.011 4.011 7 C -0.248 4.248 8 C 0.563 3.437 9 O -0.590 6.590 10 N -0.599 5.599 11 C 0.090 3.910 12 C -0.106 4.106 13 C -0.097 4.097 14 H 0.116 0.884 15 C 0.136 3.864 16 N -0.623 5.623 17 C -0.241 4.241 18 H 0.092 0.908 19 C -0.075 4.075 20 N -0.955 5.955 21 Si 0.983 3.017 22 H -0.272 1.272 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.198 3.802 26 C 0.116 3.884 27 H 0.070 0.930 28 C 0.175 3.825 29 F -0.145 7.145 30 C -0.244 4.244 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.169 0.831 38 H 0.149 0.851 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.241 0.759 46 H -0.004 1.004 47 H -0.001 1.001 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 23.760 -14.536 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.329 5.329 3 C -0.063 4.063 4 C 0.160 3.840 5 C -0.223 4.223 6 C -0.030 4.030 7 C -0.254 4.254 8 C 0.354 3.646 9 O -0.471 6.471 10 N -0.330 5.330 11 C -0.031 4.031 12 C -0.144 4.144 13 C -0.117 4.117 14 H 0.134 0.866 15 C 0.012 3.988 16 N -0.349 5.349 17 C -0.370 4.370 18 H 0.110 0.890 19 C -0.268 4.268 20 N -0.604 5.604 21 Si 0.810 3.190 22 H -0.198 1.198 23 H -0.229 1.229 24 H -0.196 1.196 25 C 0.072 3.928 26 C 0.011 3.989 27 H 0.088 0.912 28 C 0.154 3.846 29 F -0.123 7.123 30 C -0.268 4.268 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.186 0.814 38 H 0.166 0.834 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.137 0.863 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.014 0.986 47 H 0.017 0.983 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.401 23.390 -14.003 29.549 hybrid contribution 0.067 -1.572 1.592 2.238 sum -11.334 21.819 -12.411 27.542 Atomic orbital electron populations 1.21930 0.77783 1.04635 1.01807 1.46648 1.06509 1.03117 1.76646 1.22048 0.97950 0.83388 1.02869 1.17719 0.91377 0.85776 0.89151 1.20702 0.91750 0.99289 1.10577 1.21020 1.00918 0.89504 0.91593 1.19581 0.92259 0.94021 1.19509 1.18298 0.80178 0.88118 0.78008 1.90800 1.69761 1.42010 1.44550 1.48305 1.20777 1.12241 1.51725 1.22879 0.96252 0.89747 0.94202 1.22836 1.00340 0.94660 0.96553 1.23152 0.92387 1.00222 0.95914 0.86580 1.21604 0.96939 0.95429 0.84859 1.44510 1.08513 1.65751 1.16173 1.19484 0.93259 1.30006 0.94224 0.88986 1.25833 0.98394 1.01157 1.01407 1.70324 1.18439 1.43582 1.28015 0.85091 0.77764 0.77958 0.78166 1.19795 1.22859 1.19614 1.20869 0.84506 0.95157 0.92283 1.22547 0.92094 0.87596 0.96694 0.91191 1.17662 0.88459 0.81383 0.97131 1.91491 1.80252 1.47386 1.93209 1.20490 1.01226 0.88987 1.16098 0.92584 0.87845 0.92031 0.91498 0.89194 0.90407 0.81394 0.83354 0.87631 0.91009 0.88618 0.86256 0.93430 0.94674 0.94955 0.98583 0.98251 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 9.38 127.77 1.20 1.83 16 2 N -0.62 -7.35 3.39 -747.36 -2.53 -9.88 16 3 C 0.08 0.45 10.14 127.77 1.30 1.74 16 4 C 0.27 4.97 6.55 38.45 0.25 5.22 16 5 C -0.20 -3.64 9.13 22.13 0.20 -3.43 16 6 C -0.01 -0.27 7.83 22.26 0.17 -0.10 16 7 C -0.25 -8.50 5.53 -20.04 -0.11 -8.61 16 8 C 0.56 24.91 7.04 86.65 0.61 25.52 16 9 O -0.59 -33.03 15.90 -4.05 -0.06 -33.09 16 10 N -0.60 -23.13 2.98 -788.14 -2.35 -25.48 16 11 C 0.09 2.32 4.66 86.84 0.40 2.72 16 12 C -0.11 -2.23 6.34 31.96 0.20 -2.03 16 13 C -0.10 -3.10 4.28 -8.93 -0.04 -3.14 16 14 H 0.12 3.28 8.14 -2.38 -0.02 3.26 16 15 C 0.14 5.30 6.46 86.69 0.56 5.86 16 16 N -0.62 -33.63 3.38 -696.17 -2.35 -35.99 16 17 C -0.24 -14.08 10.25 84.03 0.86 -13.21 16 18 H 0.09 4.96 7.83 -2.91 -0.02 4.94 16 19 C -0.08 -4.62 5.48 84.86 0.47 -4.15 16 20 N -0.95 -64.21 10.24 21.65 0.22 -63.99 16 21 Si 0.98 48.58 29.55 68.60 2.03 50.61 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.30 -15.34 7.11 99.48 0.71 -14.64 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.20 11.27 4.91 86.86 0.43 11.70 16 26 C 0.12 4.95 3.68 46.24 0.17 5.12 16 27 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 28 C 0.17 5.74 7.24 22.66 0.16 5.90 16 29 F -0.14 -5.64 16.13 44.97 0.73 -4.91 16 30 C -0.24 -5.76 9.27 22.41 0.21 -5.55 16 31 H 0.06 0.51 7.93 -2.39 -0.02 0.49 16 32 H 0.10 0.27 7.80 -2.38 -0.02 0.26 16 33 H 0.06 0.48 7.93 -2.39 -0.02 0.47 16 34 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.09 0.20 7.92 -2.39 -0.02 0.18 16 36 H 0.08 0.42 6.17 -2.39 -0.01 0.40 16 37 H 0.17 1.82 6.10 -2.91 -0.02 1.80 16 38 H 0.15 3.40 5.40 -2.91 -0.02 3.39 16 39 H 0.11 2.09 6.56 -2.38 -0.02 2.08 16 40 H 0.07 1.86 6.33 -2.39 -0.02 1.84 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.12 1.76 8.07 -2.39 -0.02 1.74 16 43 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.04 1.27 6.59 -2.39 -0.02 1.26 16 45 H 0.24 16.02 8.31 -92.70 -0.77 15.25 16 46 H 0.00 -0.26 7.33 -2.38 -0.02 -0.28 16 47 H 0.00 -0.05 6.69 -2.39 -0.02 -0.07 16 48 H 0.15 2.95 6.70 -2.91 -0.02 2.93 16 Total: -1.00 -92.96 375.41 3.71 -89.26 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.99 Total: 8.07 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 7.05 Total: 25.41 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -7.02 Total: -135.33 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.06 Total: -33.09 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.73 Total: -4.91 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -92.96 3.71 -89.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075880009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.555 kcal (2) G-P(sol) polarization free energy of solvation -92.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds