Wall clock time and date at job start Wed Apr 1 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99828 * 2 1 4 4 C 1.39192 * 111.00009 * 123.95385 * 2 1 3 5 5 C 1.39140 * 119.93625 * 299.99779 * 4 2 1 6 6 C 1.37648 * 120.09572 * 180.02562 * 5 4 2 7 7 C 1.39775 * 119.97296 * 0.02562 * 6 5 4 8 8 C 1.47518 * 120.06990 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99483 * 350.96373 * 8 7 6 10 10 N 1.34770 * 120.00139 * 170.95577 * 8 7 6 11 11 C 1.47412 * 125.58525 * 185.28883 * 10 8 7 12 12 C 1.54862 * 104.81510 * 204.42452 * 11 10 8 13 13 C 1.55173 * 101.73655 * 322.77395 * 12 11 10 14 14 H 1.08990 * 113.90717 * 158.47542 * 13 12 11 15 15 C 1.53753 * 108.31006 * 285.38569 * 13 12 11 16 16 N 1.46586 * 108.11209 * 124.37523 * 15 13 12 17 17 C 1.36940 * 125.31544 * 181.24534 * 16 15 13 18 18 H 1.07997 * 119.99516 * 10.97801 * 17 16 15 19 19 C 1.38811 * 119.99967 * 190.69985 * 17 16 15 20 20 N 1.31618 * 119.99829 * 12.71820 * 19 17 16 21 21 Si 1.86804 * 119.99902 * 192.70774 * 19 17 16 22 22 H 1.48504 * 109.46487 * 94.97541 * 21 19 17 23 23 H 1.48492 * 109.47216 * 214.97661 * 21 19 17 24 24 H 1.48495 * 109.46989 * 334.98126 * 21 19 17 25 25 C 1.46717 * 109.37553 * 1.50704 * 16 15 13 26 26 C 1.46704 * 125.59016 * 5.31848 * 10 8 7 27 27 H 1.09001 * 111.53268 * 56.07878 * 26 10 8 28 28 C 1.39814 * 119.86853 * 0.25253 * 7 6 5 29 29 C 1.37790 * 119.90222 * 359.49089 * 28 7 6 30 30 F 1.35100 * 119.98562 * 180.25103 * 29 28 7 31 31 H 1.09000 * 109.46922 * 296.04357 * 1 2 3 32 32 H 1.08999 * 109.47387 * 56.04995 * 1 2 3 33 33 H 1.09002 * 109.46879 * 176.04787 * 1 2 3 34 34 H 1.09001 * 109.47015 * 183.95499 * 3 2 1 35 35 H 1.09006 * 109.47259 * 303.95083 * 3 2 1 36 36 H 1.08993 * 109.47107 * 63.95213 * 3 2 1 37 37 H 1.08002 * 119.95320 * 0.04819 * 5 4 2 38 38 H 1.08007 * 120.01404 * 180.02562 * 6 5 4 39 39 H 1.08997 * 110.37102 * 323.25658 * 11 10 8 40 40 H 1.09001 * 110.37007 * 85.48066 * 11 10 8 41 41 H 1.09004 * 110.97328 * 204.66656 * 12 11 10 42 42 H 1.08998 * 110.97509 * 80.88620 * 12 11 10 43 43 H 1.09002 * 109.74801 * 4.70352 * 15 13 12 44 44 H 1.09001 * 109.73564 * 244.04083 * 15 13 12 45 45 H 0.97004 * 119.99471 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.98181 * 101.18010 * 25 16 15 47 47 H 1.08995 * 109.98889 * 222.48416 * 25 16 15 48 48 H 1.08008 * 120.04567 * 179.74081 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9678 -0.7258 1.0779 5 6 1.6539 -0.3423 2.3780 6 6 2.1458 -1.0574 3.4464 7 6 2.9624 -2.1700 3.2254 8 6 3.4912 -2.9376 4.3688 9 8 3.3566 -2.5131 5.5003 10 7 4.1234 -4.1092 4.1593 11 6 4.6003 -5.0265 5.2102 12 6 5.7445 -5.8303 4.5447 13 6 5.2033 -6.0146 3.1021 14 1 5.9770 -6.2231 2.3634 15 6 4.0942 -7.0789 3.1346 16 7 2.8817 -6.4913 2.5572 17 6 1.6745 -7.1264 2.4361 18 1 1.5083 -8.0697 2.9350 19 6 0.6627 -6.5549 1.6769 20 7 0.9309 -5.5453 0.8762 21 14 -1.0796 -7.2190 1.7913 22 1 -1.8505 -6.4187 2.7765 23 1 -1.7323 -7.1283 0.4606 24 1 -1.0408 -8.6377 2.2281 25 6 3.1650 -5.1187 2.1234 26 6 4.4503 -4.6805 2.8483 27 1 5.0445 -3.9912 2.2484 28 6 3.2818 -2.5507 1.9185 29 6 2.7822 -1.8343 0.8528 30 9 3.0856 -2.2037 -0.4108 31 1 -0.3633 0.4512 0.9233 32 1 -0.3634 0.5739 -0.8525 33 1 -0.3633 -1.0253 -0.0708 34 1 3.0828 1.3432 -0.0709 35 1 1.5898 1.9164 -0.8525 36 1 1.7043 1.8723 0.9232 37 1 1.0230 0.5174 2.5492 38 1 1.9009 -0.7588 4.4551 39 1 4.9789 -4.4627 6.0628 40 1 3.7979 -5.6942 5.5238 41 1 5.8815 -6.7937 5.0360 42 1 6.6729 -5.2593 4.5432 43 1 3.9028 -7.3801 4.1645 44 1 4.3986 -7.9457 2.5481 45 1 0.2239 -5.1462 0.3454 46 1 3.3157 -5.0927 1.0441 47 1 2.3400 -4.4626 2.4006 48 1 3.9160 -3.4076 1.7446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076609381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:34 Heat of formation + Delta-G solvation = 13.467747 kcal Electronic energy + Delta-G solvation = -32785.949972 eV Core-core repulsion = 28564.226892 eV Total energy + Delta-G solvation = -4221.723080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.75925 -42.24219 -40.57898 -39.43894 -37.52441 -36.36436 -34.09678 -33.38465 -31.64880 -31.05385 -30.32424 -28.56098 -28.28899 -26.64246 -26.21731 -24.33617 -23.70099 -22.72970 -22.34877 -21.21026 -20.63384 -19.17420 -18.66235 -17.98001 -17.72004 -17.10834 -16.98294 -16.73776 -16.70257 -16.21691 -15.89870 -15.70998 -15.67007 -15.36032 -15.02551 -14.64276 -14.54428 -14.21923 -14.13172 -13.83978 -13.73995 -13.54305 -13.40413 -13.15118 -13.00769 -12.91714 -12.86858 -12.76860 -12.68172 -12.58709 -12.31348 -12.10780 -11.87420 -11.79640 -11.58397 -11.46626 -11.02869 -10.68782 -10.01672 -9.82191 -9.61730 -9.56747 -8.81417 -7.87608 -5.20794 -0.44846 0.14633 1.41030 1.42955 1.50826 1.56865 1.90374 2.46710 2.58202 2.70420 3.15470 3.27052 3.36300 3.39669 3.58536 3.67540 3.81666 3.91768 4.00259 4.05365 4.13577 4.22187 4.33617 4.36154 4.42085 4.46062 4.55774 4.58099 4.62654 4.71733 4.78306 4.80232 4.88992 4.91229 4.94157 4.95430 5.07022 5.07733 5.11098 5.17263 5.27752 5.38484 5.42839 5.46805 5.53331 5.64964 5.84973 6.19206 6.19707 6.39512 6.97095 7.09045 7.78929 8.41013 9.21451 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.005417 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.344121 B = 5167.774725 C = 6952.709185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.529 5.529 3 C 0.029 3.971 4 C 0.080 3.920 5 C -0.129 4.129 6 C -0.065 4.065 7 C -0.128 4.128 8 C 0.574 3.426 9 O -0.575 6.575 10 N -0.593 5.593 11 C 0.102 3.898 12 C -0.103 4.103 13 C -0.096 4.096 14 H 0.133 0.867 15 C 0.132 3.868 16 N -0.617 5.617 17 C -0.244 4.244 18 H 0.076 0.924 19 C -0.052 4.052 20 N -0.929 5.929 21 Si 0.961 3.039 22 H -0.296 1.296 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.175 3.825 26 C 0.092 3.908 27 H 0.116 0.884 28 C -0.133 4.133 29 C 0.098 3.902 30 F -0.136 7.136 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.164 0.836 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.032 0.968 44 H 0.027 0.973 45 H 0.245 0.755 46 H 0.015 0.985 47 H 0.036 0.964 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.232 10.901 1.956 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.250 5.250 3 C -0.117 4.117 4 C -0.015 4.015 5 C -0.149 4.149 6 C -0.085 4.085 7 C -0.131 4.131 8 C 0.365 3.635 9 O -0.457 6.457 10 N -0.323 5.323 11 C -0.020 4.020 12 C -0.141 4.141 13 C -0.115 4.115 14 H 0.151 0.849 15 C 0.007 3.993 16 N -0.343 5.343 17 C -0.374 4.374 18 H 0.094 0.906 19 C -0.248 4.248 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.223 1.223 23 H -0.221 1.221 24 H -0.192 1.192 25 C 0.049 3.951 26 C -0.012 4.012 27 H 0.133 0.867 28 C -0.152 4.152 29 C 0.078 3.922 30 F -0.115 7.115 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.182 0.818 38 H 0.164 0.836 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.033 0.967 47 H 0.054 0.946 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.112 10.947 1.963 13.766 hybrid contribution -1.783 -0.326 0.104 1.815 sum 6.330 10.621 2.067 12.535 Atomic orbital electron populations 1.22516 0.84311 1.02296 1.02662 1.59354 1.09901 1.15873 1.39889 1.22556 1.00913 0.85593 1.02620 1.19070 0.96986 0.94453 0.91027 1.21580 1.01147 1.01484 0.90665 1.21252 0.94136 0.92462 1.00603 1.19729 1.02742 0.98603 0.92034 1.17905 0.77227 0.80143 0.88242 1.90699 1.60198 1.70198 1.24639 1.48219 1.56183 1.19064 1.08849 1.22409 0.97003 0.91440 0.91132 1.22825 0.96898 1.01579 0.92800 1.23155 0.97097 0.91528 0.99728 0.84912 1.21477 0.85968 0.95264 0.96566 1.44401 1.07433 1.10992 1.71495 1.19247 0.89169 1.04453 1.24493 0.90630 1.25473 1.01592 0.99645 0.98040 1.70119 1.31589 1.27500 1.28425 0.85320 0.81062 0.78252 0.76341 1.22324 1.22083 1.19157 1.21498 0.92897 0.86162 0.94533 1.23075 0.97384 0.95996 0.84724 0.86683 1.22825 1.01111 1.00089 0.91135 1.17596 0.99841 0.95571 0.79214 1.91466 1.91479 1.91000 1.37547 0.93341 0.88335 0.93336 0.91556 0.88683 0.93389 0.81815 0.83630 0.89709 0.93026 0.87241 0.87865 0.94970 0.95490 0.94616 0.96719 0.94603 0.80809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.34 127.69 1.19 1.85 16 2 N -0.53 -14.24 4.80 -744.87 -3.58 -17.82 16 3 C 0.03 0.54 9.38 127.69 1.20 1.74 16 4 C 0.08 2.52 4.73 38.46 0.18 2.70 16 5 C -0.13 -3.57 8.53 22.35 0.19 -3.38 16 6 C -0.06 -2.07 9.58 22.50 0.22 -1.86 16 7 C -0.13 -4.73 5.37 -20.08 -0.11 -4.84 16 8 C 0.57 22.46 7.58 86.69 0.66 23.11 16 9 O -0.58 -24.43 16.59 -4.04 -0.07 -24.50 16 10 N -0.59 -21.00 3.01 -799.00 -2.41 -23.41 16 11 C 0.10 3.03 6.47 86.84 0.56 3.59 16 12 C -0.10 -2.20 6.30 31.98 0.20 -2.00 16 13 C -0.10 -2.68 4.25 -9.01 -0.04 -2.72 16 14 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 15 C 0.13 4.92 6.41 86.62 0.56 5.48 16 16 N -0.62 -30.40 3.38 -697.96 -2.36 -32.76 16 17 C -0.24 -13.55 10.19 84.03 0.86 -12.69 16 18 H 0.08 4.08 7.86 -2.91 -0.02 4.05 16 19 C -0.05 -2.98 5.37 84.86 0.46 -2.52 16 20 N -0.93 -55.00 10.76 21.65 0.23 -54.77 16 21 Si 0.96 46.38 29.57 68.60 2.03 48.41 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 C 0.17 8.09 2.98 86.65 0.26 8.35 16 26 C 0.09 3.15 2.74 46.05 0.13 3.28 16 27 H 0.12 3.44 6.31 -2.39 -0.02 3.43 16 28 C -0.13 -4.98 6.73 22.55 0.15 -4.83 16 29 C 0.10 3.66 7.30 22.44 0.16 3.82 16 30 F -0.14 -5.50 17.07 44.97 0.77 -4.73 16 31 H 0.05 0.95 7.10 -2.39 -0.02 0.94 16 32 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.39 8.12 -2.38 -0.02 1.37 16 36 H 0.05 0.76 7.32 -2.39 -0.02 0.74 16 37 H 0.16 3.33 6.99 -2.91 -0.02 3.31 16 38 H 0.15 4.33 7.67 -2.91 -0.02 4.31 16 39 H 0.08 2.36 7.98 -2.39 -0.02 2.34 16 40 H 0.05 1.75 7.49 -2.39 -0.02 1.73 16 41 H 0.11 1.89 7.96 -2.38 -0.02 1.87 16 42 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.03 1.18 6.78 -2.39 -0.02 1.16 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 46 H 0.02 0.78 7.48 -2.39 -0.02 0.77 16 47 H 0.04 1.91 5.08 -2.39 -0.01 1.89 16 48 H 0.18 6.55 2.00 -6.89 -0.01 6.54 16 Total: -1.00 -73.56 373.02 2.42 -71.14 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.98 Total: 19.35 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 6.82 Total: 19.09 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -8.11 Total: -128.76 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.07 Total: -24.50 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.77 Total: -4.73 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.56 2.42 -71.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076609381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.606 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds