Wall clock time and date at job start Wed Apr 1 2020 05:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00264 * 2 1 4 4 C 1.38500 * 119.99960 * 180.02562 * 2 1 3 5 5 C 1.39604 * 120.04783 * 4.99722 * 4 2 1 6 6 C 1.38284 * 118.03005 * 180.02562 * 5 4 2 7 7 C 1.40069 * 117.99387 * 0.02562 * 6 5 4 8 8 C 1.47859 * 120.09598 * 179.97438 * 7 6 5 9 9 O 1.21555 * 119.99996 * 351.89501 * 8 7 6 10 10 N 1.34773 * 120.00080 * 171.89183 * 8 7 6 11 11 C 1.44964 * 117.32467 * 1.91118 * 10 8 7 12 12 C 1.51778 * 111.99901 * 203.54173 * 11 10 8 13 13 O 1.41320 * 111.63405 * 319.66702 * 12 11 10 14 14 C 1.40789 * 118.39898 * 56.76946 * 13 12 11 15 15 H 1.09000 * 109.34571 * 188.31285 * 14 13 12 16 16 C 1.54188 * 110.22881 * 67.70335 * 14 13 12 17 17 N 1.46877 * 106.39523 * 210.33477 * 16 14 13 18 18 C 1.36944 * 125.36959 * 197.82023 * 17 16 14 19 19 H 1.07993 * 120.00279 * 184.13206 * 18 17 16 20 20 C 1.38809 * 119.99622 * 4.12738 * 18 17 16 21 21 N 1.31628 * 120.00123 * 354.30025 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 174.30145 * 20 18 17 23 23 H 1.48498 * 109.47099 * 94.99462 * 22 20 18 24 24 H 1.48499 * 109.47510 * 215.00455 * 22 20 18 25 25 H 1.48504 * 109.46951 * 334.99962 * 22 20 18 26 26 C 1.46785 * 109.26847 * 17.84471 * 17 16 14 27 27 C 1.44539 * 117.32531 * 182.16876 * 10 8 7 28 28 H 1.09005 * 109.48595 * 285.85334 * 27 10 8 29 29 N 1.32762 * 119.80811 * 359.97438 * 7 6 5 30 30 N 1.28354 * 122.10563 * 359.97438 * 29 7 6 31 31 H 1.08993 * 109.47203 * 240.00102 * 1 2 3 32 32 H 1.09003 * 109.46865 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47409 * 119.99391 * 1 2 3 34 34 H 1.08997 * 109.46843 * 269.99874 * 3 2 1 35 35 H 1.09002 * 109.47193 * 29.99921 * 3 2 1 36 36 H 1.08999 * 109.46949 * 150.00333 * 3 2 1 37 37 H 1.08003 * 120.98557 * 0.02562 * 5 4 2 38 38 H 1.08000 * 121.00176 * 179.72507 * 6 5 4 39 39 H 1.09003 * 108.99502 * 324.33178 * 11 10 8 40 40 H 1.09003 * 108.99845 * 83.08667 * 11 10 8 41 41 H 1.09003 * 109.15620 * 199.01612 * 12 11 10 42 42 H 1.08995 * 108.82337 * 80.09679 * 12 11 10 43 43 H 1.08997 * 110.07423 * 91.10696 * 16 14 13 44 44 H 1.09000 * 110.12400 * 329.59088 * 16 14 13 45 45 H 0.96995 * 119.99796 * 179.97438 * 21 20 18 46 46 H 1.09009 * 109.82680 * 239.35801 * 26 17 16 47 47 H 1.08994 * 109.83453 * 118.38899 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1574 -1.1994 -0.0005 5 6 1.4644 -2.4067 -0.1063 6 6 2.1974 -3.5793 -0.1021 7 6 3.5904 -3.4835 0.0087 8 6 4.4193 -4.7078 0.0186 9 8 3.8894 -5.8001 0.0793 10 7 5.7624 -4.6128 -0.0397 11 6 6.3347 -3.2812 -0.0677 12 6 7.7189 -3.2702 -0.6902 13 8 8.4820 -4.3879 -0.2834 14 6 7.9639 -5.6751 -0.5219 15 1 8.5910 -6.4147 -0.0241 16 6 7.9259 -5.9623 -2.0363 17 7 6.7927 -6.8701 -2.2578 18 6 6.6013 -7.6417 -3.3728 19 1 5.7012 -8.2297 -3.4747 20 6 7.5643 -7.6681 -4.3721 21 7 8.6072 -6.8680 -4.3024 22 14 7.3803 -8.8389 -5.8160 23 1 6.7330 -8.1299 -6.9488 24 1 8.7204 -9.3224 -6.2352 25 1 6.5412 -9.9955 -5.4115 26 6 5.8971 -6.8194 -1.0959 27 6 6.5140 -5.8469 -0.0750 28 1 6.5066 -6.3055 0.9139 29 7 4.1642 -2.2902 0.1048 30 7 3.4823 -1.2028 0.0997 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 1.0277 -0.0005 33 1 -0.3634 -0.5137 -0.8900 34 1 2.3792 1.5833 -1.0277 35 1 1.6085 2.0284 0.5138 36 1 3.1499 1.1383 0.5138 37 1 0.3877 -2.4243 -0.1891 38 1 1.7100 -4.5402 -0.1769 39 1 5.6803 -2.6258 -0.6426 40 1 6.4051 -2.9037 0.9524 41 1 8.2371 -2.3582 -0.3938 42 1 7.6166 -3.2848 -1.7753 43 1 8.8542 -6.4397 -2.3499 44 1 7.7765 -5.0355 -2.5901 45 1 9.2803 -6.8867 -5.0006 46 1 5.8082 -7.8119 -0.6540 47 1 4.9146 -6.4601 -1.4016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083250673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:49 Heat of formation + Delta-G solvation = 74.549470 kcal Electronic energy + Delta-G solvation = -31774.023510 eV Core-core repulsion = 27574.869095 eV Total energy + Delta-G solvation = -4199.154416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.49971 -40.35749 -38.32964 -37.38082 -35.80139 -34.86474 -33.26550 -32.51990 -31.54649 -29.90436 -28.87655 -27.92997 -27.51102 -26.17888 -24.86590 -24.40896 -23.14598 -22.70890 -21.30644 -20.10661 -18.76698 -18.08179 -17.73907 -17.36995 -16.79427 -16.56414 -16.12008 -15.55343 -15.41576 -15.04109 -14.89983 -14.66564 -14.45657 -14.26923 -14.05541 -13.80675 -13.51080 -13.34669 -13.12218 -12.90515 -12.76954 -12.45902 -12.38013 -12.19546 -11.93313 -11.85624 -11.02707 -11.02383 -10.86406 -10.74409 -10.55691 -10.39626 -10.35063 -10.32753 -10.06782 -9.77180 -9.59837 -9.44127 -8.85863 -8.52886 -8.25435 -8.11786 -6.75980 -5.63641 -3.00880 0.55280 0.68304 2.34616 2.77431 3.05816 3.43469 3.48796 3.51455 3.63890 3.90412 4.21220 4.27450 4.37134 4.46595 4.54306 4.61052 4.77027 4.80988 4.90870 5.10347 5.11259 5.19541 5.24326 5.36923 5.40937 5.46842 5.52120 5.58023 5.63972 5.72116 5.76913 5.82180 5.91991 6.13055 6.18178 6.25069 6.36432 6.50057 6.65226 6.69713 6.85759 7.18089 7.43574 7.49273 7.68929 7.80884 7.98596 8.27180 8.37531 8.54040 9.26763 9.87366 10.50657 11.43363 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.003005 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.653255 B = 9315.214736 C = 9938.778208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.603 5.603 3 C 0.092 3.908 4 C 0.351 3.649 5 C -0.187 4.187 6 C -0.021 4.021 7 C -0.026 4.026 8 C 0.569 3.431 9 O -0.525 6.525 10 N -0.565 5.565 11 C 0.070 3.930 12 C 0.056 3.944 13 O -0.372 6.372 14 C 0.070 3.930 15 H 0.113 0.887 16 C 0.137 3.863 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.079 0.921 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.291 1.291 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.129 3.871 27 C 0.109 3.891 28 H 0.074 0.926 29 N -0.160 5.160 30 N -0.311 5.311 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.120 0.880 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.021 0.979 45 H 0.252 0.748 46 H 0.036 0.964 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 16.754 11.570 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.317 5.317 3 C -0.050 4.050 4 C 0.112 3.888 5 C -0.220 4.220 6 C -0.049 4.049 7 C -0.176 4.176 8 C 0.355 3.645 9 O -0.400 6.400 10 N -0.297 5.297 11 C -0.053 4.053 12 C -0.022 4.022 13 O -0.289 6.289 14 C 0.011 3.989 15 H 0.131 0.869 16 C 0.012 3.988 17 N -0.331 5.331 18 C -0.348 4.348 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.218 1.218 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.003 3.997 27 C 0.005 3.995 28 H 0.092 0.908 29 N -0.007 5.007 30 N -0.164 5.164 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.168 0.832 38 H 0.179 0.821 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.284 17.193 11.654 24.655 hybrid contribution -1.759 -1.221 -1.130 2.421 sum -15.043 15.972 10.524 24.334 Atomic orbital electron populations 1.21803 0.77948 1.03564 1.01899 1.46094 1.05455 1.03020 1.77094 1.21756 0.97940 0.83335 1.01990 1.20090 0.91453 0.86930 0.90359 1.21764 1.01974 0.91031 1.07207 1.22145 0.92754 1.00130 0.89903 1.22557 0.93683 0.94444 1.06924 1.17560 0.82079 0.86992 0.77912 1.90784 1.72536 1.26713 1.50006 1.46632 1.05385 1.07063 1.70575 1.22422 0.96757 0.83272 1.02874 1.22320 0.90795 0.89557 0.99509 1.86836 1.46393 1.13093 1.82566 1.23027 0.91446 0.84132 1.00321 0.86897 1.22117 0.94736 0.94033 0.87912 1.44274 1.23209 1.49361 1.16306 1.19072 1.02756 1.18471 0.94540 0.90353 1.24813 0.97149 0.99742 0.98919 1.69879 1.12796 1.39824 1.34546 0.86077 0.76839 0.80554 0.82201 1.21813 1.21619 1.20597 1.21682 0.95029 0.95471 0.87530 1.21652 0.93634 0.84167 1.00081 0.90820 1.73471 1.27897 0.94600 1.04743 1.73174 1.03593 1.20447 1.19174 0.92030 0.89798 0.91980 0.92765 0.91338 0.89706 0.83158 0.82097 0.86276 0.91309 0.87896 0.92669 0.88175 0.96089 0.93759 0.94632 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 9.42 59.84 0.56 0.94 16 2 N -0.60 -4.69 3.38 -189.55 -0.64 -5.33 16 3 C 0.09 0.59 10.47 59.85 0.63 1.21 16 4 C 0.35 3.80 7.44 -154.94 -1.15 2.65 16 5 C -0.19 -1.82 9.40 -39.06 -0.37 -2.18 16 6 C -0.02 -0.25 9.71 -38.88 -0.38 -0.63 16 7 C -0.03 -0.39 6.63 -82.84 -0.55 -0.94 16 8 C 0.57 10.32 6.90 -12.32 -0.08 10.23 16 9 O -0.52 -10.52 13.72 5.32 0.07 -10.45 16 10 N -0.56 -10.38 3.09 -170.22 -0.53 -10.91 16 11 C 0.07 1.12 5.10 -5.48 -0.03 1.10 16 12 C 0.06 0.92 6.73 36.54 0.25 1.16 16 13 O -0.37 -7.09 10.25 -34.36 -0.35 -7.44 16 14 C 0.07 1.44 3.91 -26.27 -0.10 1.33 16 15 H 0.11 2.18 8.14 -51.93 -0.42 1.76 16 16 C 0.14 3.47 5.32 -3.22 -0.02 3.46 16 17 N -0.60 -16.23 3.39 -171.42 -0.58 -16.81 16 18 C -0.22 -6.38 10.25 -15.06 -0.15 -6.53 16 19 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 20 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 21 N -0.92 -27.50 10.18 55.49 0.56 -26.94 16 22 Si 0.91 22.64 29.56 -169.99 -5.02 17.61 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.13 3.00 6.05 -3.42 -0.02 2.98 16 27 C 0.11 2.17 3.29 -68.67 -0.23 1.95 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 N -0.16 -2.35 6.98 33.32 0.23 -2.12 16 30 N -0.31 -4.11 10.25 31.21 0.32 -3.79 16 31 H 0.06 0.22 8.12 -51.93 -0.42 -0.20 16 32 H 0.08 0.19 7.79 -51.93 -0.40 -0.22 16 33 H 0.06 0.23 7.76 -51.93 -0.40 -0.17 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 36 H 0.08 0.66 7.31 -51.93 -0.38 0.28 16 37 H 0.15 0.94 6.81 -52.48 -0.36 0.58 16 38 H 0.16 1.78 7.73 -52.49 -0.41 1.37 16 39 H 0.12 1.90 4.93 -84.50 -0.42 1.48 16 40 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 41 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 43 H 0.10 2.82 6.17 -51.93 -0.32 2.50 16 44 H 0.02 0.58 6.48 -51.93 -0.34 0.24 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 47 H 0.05 1.30 5.37 -51.93 -0.28 1.02 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -34.91 366.26 -8.72 -43.62 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.56 Total: 0.70 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: -1.74 Total: 16.32 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.63 Total: -65.89 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.28 Total: -17.89 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.91 -8.72 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083250673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.172 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds