Wall clock time and date at job start Wed Apr 1 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00264 * 2 1 4 4 C 1.38500 * 119.99960 * 180.02562 * 2 1 3 5 5 C 1.39604 * 120.04783 * 4.99722 * 4 2 1 6 6 C 1.38284 * 118.03005 * 180.02562 * 5 4 2 7 7 C 1.40069 * 117.99387 * 0.02562 * 6 5 4 8 8 C 1.47859 * 120.09598 * 179.97438 * 7 6 5 9 9 O 1.21555 * 119.99996 * 351.89501 * 8 7 6 10 10 N 1.34773 * 120.00080 * 171.89183 * 8 7 6 11 11 C 1.44964 * 117.32467 * 1.91118 * 10 8 7 12 12 C 1.51778 * 111.99901 * 203.54173 * 11 10 8 13 13 O 1.41320 * 111.63405 * 319.66702 * 12 11 10 14 14 C 1.40789 * 118.39898 * 56.76946 * 13 12 11 15 15 H 1.09000 * 109.34571 * 188.31285 * 14 13 12 16 16 C 1.54188 * 110.22881 * 67.70335 * 14 13 12 17 17 N 1.46877 * 106.39523 * 210.33477 * 16 14 13 18 18 C 1.36944 * 125.36959 * 197.82023 * 17 16 14 19 19 H 1.07993 * 120.00279 * 184.13206 * 18 17 16 20 20 C 1.38809 * 119.99622 * 4.12738 * 18 17 16 21 21 N 1.31628 * 120.00123 * 354.30025 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 174.30145 * 20 18 17 23 23 H 1.48498 * 109.47099 * 94.99462 * 22 20 18 24 24 H 1.48499 * 109.47510 * 215.00455 * 22 20 18 25 25 H 1.48504 * 109.46951 * 334.99962 * 22 20 18 26 26 C 1.46785 * 109.26847 * 17.84471 * 17 16 14 27 27 C 1.44539 * 117.32531 * 182.16876 * 10 8 7 28 28 H 1.09005 * 109.48595 * 285.85334 * 27 10 8 29 29 N 1.32762 * 119.80811 * 359.97438 * 7 6 5 30 30 N 1.28354 * 122.10563 * 359.97438 * 29 7 6 31 31 H 1.08993 * 109.47203 * 240.00102 * 1 2 3 32 32 H 1.09003 * 109.46865 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47409 * 119.99391 * 1 2 3 34 34 H 1.08997 * 109.46843 * 269.99874 * 3 2 1 35 35 H 1.09002 * 109.47193 * 29.99921 * 3 2 1 36 36 H 1.08999 * 109.46949 * 150.00333 * 3 2 1 37 37 H 1.08003 * 120.98557 * 0.02562 * 5 4 2 38 38 H 1.08000 * 121.00176 * 179.72507 * 6 5 4 39 39 H 1.09003 * 108.99502 * 324.33178 * 11 10 8 40 40 H 1.09003 * 108.99845 * 83.08667 * 11 10 8 41 41 H 1.09003 * 109.15620 * 199.01612 * 12 11 10 42 42 H 1.08995 * 108.82337 * 80.09679 * 12 11 10 43 43 H 1.08997 * 110.07423 * 91.10696 * 16 14 13 44 44 H 1.09000 * 110.12400 * 329.59088 * 16 14 13 45 45 H 0.96995 * 119.99796 * 179.97438 * 21 20 18 46 46 H 1.09009 * 109.82680 * 239.35801 * 26 17 16 47 47 H 1.08994 * 109.83453 * 118.38899 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1574 -1.1994 -0.0005 5 6 1.4644 -2.4067 -0.1063 6 6 2.1974 -3.5793 -0.1021 7 6 3.5904 -3.4835 0.0087 8 6 4.4193 -4.7078 0.0186 9 8 3.8894 -5.8001 0.0793 10 7 5.7624 -4.6128 -0.0397 11 6 6.3347 -3.2812 -0.0677 12 6 7.7189 -3.2702 -0.6902 13 8 8.4820 -4.3879 -0.2834 14 6 7.9639 -5.6751 -0.5219 15 1 8.5910 -6.4147 -0.0241 16 6 7.9259 -5.9623 -2.0363 17 7 6.7927 -6.8701 -2.2578 18 6 6.6013 -7.6417 -3.3728 19 1 5.7012 -8.2297 -3.4747 20 6 7.5643 -7.6681 -4.3721 21 7 8.6072 -6.8680 -4.3024 22 14 7.3803 -8.8389 -5.8160 23 1 6.7330 -8.1299 -6.9488 24 1 8.7204 -9.3224 -6.2352 25 1 6.5412 -9.9955 -5.4115 26 6 5.8971 -6.8194 -1.0959 27 6 6.5140 -5.8469 -0.0750 28 1 6.5066 -6.3055 0.9139 29 7 4.1642 -2.2902 0.1048 30 7 3.4823 -1.2028 0.0997 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 1.0277 -0.0005 33 1 -0.3634 -0.5137 -0.8900 34 1 2.3792 1.5833 -1.0277 35 1 1.6085 2.0284 0.5138 36 1 3.1499 1.1383 0.5138 37 1 0.3877 -2.4243 -0.1891 38 1 1.7100 -4.5402 -0.1769 39 1 5.6803 -2.6258 -0.6426 40 1 6.4051 -2.9037 0.9524 41 1 8.2371 -2.3582 -0.3938 42 1 7.6166 -3.2848 -1.7753 43 1 8.8542 -6.4397 -2.3499 44 1 7.7765 -5.0355 -2.5901 45 1 9.2803 -6.8867 -5.0006 46 1 5.8082 -7.8119 -0.6540 47 1 4.9146 -6.4601 -1.4016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083250673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:46 Heat of formation + Delta-G solvation = 50.120291 kcal Electronic energy + Delta-G solvation = -31775.082839 eV Core-core repulsion = 27574.869095 eV Total energy + Delta-G solvation = -4200.213744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.63508 -41.64663 -39.75633 -38.17572 -37.59714 -36.28318 -34.41216 -34.16774 -32.64861 -31.64833 -29.61610 -29.36405 -29.13305 -27.26360 -26.42449 -25.60874 -24.61567 -23.69354 -22.70108 -21.78099 -20.29664 -19.32513 -18.98338 -18.50400 -18.30947 -18.03323 -17.19651 -17.06170 -16.49875 -16.45201 -16.29816 -15.84674 -15.69125 -15.55764 -15.20056 -15.12529 -14.94015 -14.61994 -14.38909 -14.05185 -13.88160 -13.75543 -13.49078 -13.35561 -13.19090 -13.04490 -12.83819 -12.80643 -12.32579 -12.18004 -12.15950 -12.04758 -11.91797 -11.75872 -11.60942 -11.30581 -10.98734 -10.77796 -10.67904 -10.35045 -9.61514 -8.95301 -8.89887 -7.84331 -5.25735 -0.43216 -0.20353 1.43998 1.46296 1.54341 1.56709 1.65681 1.79791 2.46176 2.57438 2.72456 2.92919 3.26672 3.32447 3.45390 3.57244 3.67547 3.73289 3.78138 3.89455 3.96313 4.09816 4.19181 4.23468 4.37089 4.43004 4.49014 4.50780 4.53377 4.62380 4.74085 4.78443 4.84377 4.89039 4.90823 4.95656 4.98699 5.03259 5.08254 5.36806 5.49367 5.58274 5.68063 5.93216 5.99090 6.10896 6.20183 6.40141 6.90787 7.06770 7.57794 7.71924 8.34244 9.20712 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.003005 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.653255 B = 9315.214736 C = 9938.778208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.595 5.595 3 C 0.087 3.913 4 C 0.346 3.654 5 C -0.169 4.169 6 C -0.030 4.030 7 C -0.053 4.053 8 C 0.565 3.435 9 O -0.553 6.553 10 N -0.574 5.574 11 C 0.077 3.923 12 C 0.052 3.948 13 O -0.372 6.372 14 C 0.085 3.915 15 H 0.129 0.871 16 C 0.148 3.852 17 N -0.621 5.621 18 C -0.244 4.244 19 H 0.077 0.923 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.983 3.017 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.269 1.269 26 C 0.131 3.869 27 C 0.118 3.882 28 H 0.093 0.907 29 N -0.169 5.169 30 N -0.331 5.331 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.190 0.810 38 H 0.167 0.833 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.144 0.856 42 H 0.029 0.971 43 H 0.068 0.932 44 H -0.010 1.010 45 H 0.249 0.751 46 H 0.034 0.966 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.812 18.533 12.393 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.307 5.307 3 C -0.056 4.056 4 C 0.105 3.895 5 C -0.201 4.201 6 C -0.058 4.058 7 C -0.203 4.203 8 C 0.353 3.647 9 O -0.431 6.431 10 N -0.306 5.306 11 C -0.046 4.046 12 C -0.025 4.025 13 O -0.289 6.289 14 C 0.026 3.974 15 H 0.146 0.854 16 C 0.023 3.977 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.095 0.905 20 C -0.255 4.255 21 N -0.596 5.596 22 Si 0.810 3.190 23 H -0.215 1.215 24 H -0.214 1.214 25 H -0.194 1.194 26 C 0.006 3.994 27 C 0.014 3.986 28 H 0.111 0.889 29 N -0.017 5.017 30 N -0.185 5.185 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.208 0.792 38 H 0.185 0.815 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.161 0.839 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.008 0.992 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.545 19.032 12.499 27.570 hybrid contribution -1.229 -1.544 -1.402 2.420 sum -16.774 17.488 11.097 26.653 Atomic orbital electron populations 1.22150 0.75432 1.05678 1.02912 1.46527 1.07021 1.02337 1.74773 1.21899 0.97883 0.83427 1.02351 1.20394 0.90997 0.88620 0.89529 1.22099 1.03583 0.89492 1.04961 1.22258 0.91729 1.01474 0.90331 1.22228 0.94492 0.93501 1.10078 1.18012 0.82021 0.87830 0.76861 1.90744 1.72985 1.28077 1.51337 1.46755 1.05748 1.07204 1.70900 1.22503 0.96022 0.82202 1.03865 1.22587 0.91749 0.90035 0.98112 1.86842 1.46942 1.12908 1.82208 1.22777 0.92384 0.85542 0.96745 0.85364 1.21849 0.92823 0.91940 0.91098 1.44535 1.24297 1.49276 1.16802 1.19397 1.03061 1.19068 0.95747 0.90491 1.25681 0.96858 1.01269 1.01679 1.70121 1.13335 1.40929 1.35191 0.85007 0.76832 0.78570 0.78566 1.21473 1.21407 1.19373 1.21701 0.94058 0.96361 0.87318 1.21439 0.92871 0.84626 0.99699 0.88908 1.73310 1.28773 0.94647 1.04935 1.73084 1.05156 1.19645 1.20634 0.90827 0.87353 0.91002 0.92563 0.88210 0.91374 0.79245 0.81529 0.86075 0.89486 0.83880 0.95288 0.91387 0.99170 0.94137 0.94800 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 9.42 127.77 1.20 1.52 16 2 N -0.60 -7.35 3.38 -753.60 -2.54 -9.89 16 3 C 0.09 0.87 10.47 127.77 1.34 2.21 16 4 C 0.35 6.73 7.44 133.21 0.99 7.72 16 5 C -0.17 -2.86 9.40 22.61 0.21 -2.64 16 6 C -0.03 -0.70 9.71 22.73 0.22 -0.48 16 7 C -0.05 -1.60 6.63 42.00 0.28 -1.32 16 8 C 0.57 20.90 6.90 86.79 0.60 21.50 16 9 O -0.55 -22.82 13.72 -3.89 -0.05 -22.87 16 10 N -0.57 -21.33 3.09 -810.73 -2.51 -23.84 16 11 C 0.08 2.43 5.10 86.27 0.44 2.87 16 12 C 0.05 1.70 6.73 71.58 0.48 2.18 16 13 O -0.37 -14.09 10.25 -145.86 -1.50 -15.59 16 14 C 0.09 3.55 3.91 30.89 0.12 3.67 16 15 H 0.13 4.93 8.14 -2.39 -0.02 4.91 16 16 C 0.15 7.85 5.32 86.71 0.46 8.31 16 17 N -0.62 -34.74 3.39 -696.26 -2.36 -37.10 16 18 C -0.24 -14.59 10.25 84.03 0.86 -13.73 16 19 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 20 C -0.06 -3.67 5.48 84.86 0.46 -3.20 16 21 N -0.95 -58.39 10.18 21.65 0.22 -58.17 16 22 Si 0.98 47.36 29.56 68.60 2.03 49.38 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 26 C 0.13 6.32 6.05 86.63 0.52 6.84 16 27 C 0.12 4.78 3.29 45.56 0.15 4.93 16 28 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 29 N -0.17 -4.91 6.98 -48.50 -0.34 -5.25 16 30 N -0.33 -8.41 10.25 -55.17 -0.57 -8.97 16 31 H 0.07 0.19 8.12 -2.39 -0.02 0.17 16 32 H 0.11 -0.04 7.79 -2.39 -0.02 -0.06 16 33 H 0.07 0.21 7.76 -2.39 -0.02 0.19 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.39 7.92 -2.39 -0.02 0.37 16 36 H 0.07 0.95 7.31 -2.39 -0.02 0.93 16 37 H 0.19 1.58 6.81 -2.91 -0.02 1.56 16 38 H 0.17 3.61 7.73 -2.91 -0.02 3.59 16 39 H 0.12 3.88 4.93 -44.52 -0.22 3.66 16 40 H 0.09 2.45 8.06 -2.39 -0.02 2.43 16 41 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.03 1.10 6.73 -2.39 -0.02 1.09 16 43 H 0.07 4.03 6.17 -2.39 -0.01 4.01 16 44 H -0.01 -0.56 6.48 -2.39 -0.02 -0.57 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.04 1.95 5.37 -2.39 -0.01 1.94 16 Total: -1.00 -79.28 366.26 1.53 -77.75 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.80 Total: 14.16 kcal Atomic # 6 Polarization: 32.03 SS G_CDS: 8.35 Total: 40.38 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -8.09 Total: -143.22 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.55 Total: -38.45 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -79.28 1.53 -77.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083250673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.874 kcal (2) G-P(sol) polarization free energy of solvation -79.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds